NO08G02390.1, NO08G02390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02390.1
Unique NameNO08G02390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length474
Alignment locationchr8:696826..697749 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:696826..697749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G02390.1 vs.
Match: EWM26622.1 (cytochrome c oxidase subunit vb [Nannochloropsis gaditana])

HSP 1 Score: 281.6 bits (719), Expect = 1.500e-72
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = 0 
Query:    3 ALKRLASASAAQRRALGAVSSVRRMGTLGEELKGAPSKEEEAKYAKVIKVGDKLYGVPAVQEGTFGLDLQQQVGRRWEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLYKID 158
            ALKR+ASA   +R+ALG +S+ R +GTLGEELK APSKE+EAKYAKVIKVGDKLYGVPAVQEGTFG DLQQQVGRR+EELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDL YVPKIDKYFSLYKID
Sbjct:  106 ALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID 260
The following BLAST results are available for this feature:
BLAST of NO08G02390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26622.11.500e-7289.03cytochrome c oxidase subunit vb [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02390NO08G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02390.1NO08G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02390.1.cds1NO08G02390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02390.1.cds2NO08G02390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02390.1.cds3NO08G02390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02390.1 ID=NO08G02390.1|Name=NO08G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
ATGCTCGCGTTAAAGCGCCTTGCCTCGGCCTCTGCTGCCCAGCGCCGGGC
CCTGGGTGCCGTGTCATCCGTGCGGCGCATGGGCACTCTTGGAGAGGAGC
TCAAAGGCGCTCCAAGCAAGGAGGAGGAGGCGAAGTACGCCAAGGTGATC
AAGGTAGGGGATAAACTTTACGGCGTGCCTGCTGTTCAGGAGGGCACCTT
CGGGCTGGATCTTCAGCAGCAGGTCGGGCGGCGATGGGAGGAATTGGTGT
ACGAGCTTAACGGCGAGGTACTTTTCAACCGCGACCCCGTATTTGCACTC
CCCGATCAAGGCACCAAGAGTAACCCTGTGCTGGTTCCGTCCGGTGAGAA
CGAGCGTATCGTGGGCTATGAGGACCCGCATGTGCACCAGGTTTTCTGGT
TCAAGCTGCGCAAGGGAGACCTGGCATATGTGCCCAAGATCGACAAATAT
TTTTCCCTTTACAAGATCGACTAA
back to top

protein sequence of NO08G02390.1

>NO08G02390.1-protein ID=NO08G02390.1-protein|Name=NO08G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MLALKRLASASAAQRRALGAVSSVRRMGTLGEELKGAPSKEEEAKYAKVI
KVGDKLYGVPAVQEGTFGLDLQQQVGRRWEELVYELNGEVLFNRDPVFAL
PDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKY
FSLYKID*
back to top

mRNA from alignment at chr8:696826..697749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02390.1 ID=NO08G02390.1|Name=NO08G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at chr8:696826..697749+ (Nannochloropsis oceanica)
ATGCTCGCGTTAAAGCGCCTTGCCTCGGCCTCTGCTGCCCAGCGCCGGGC
CCTGGGTGCCGTGTCATCCGTGCGGCGCATGGGCACTCTTGGAGAGGAGC
TCAAAGGCGCTCCAAGCAAGGAGGAGGAGGCGAAGTACGCCAAGGTGATC
AAGGTAGGGGATAAACTTTACGGCGTGCCTGCTGTTCAGGAGGGCACCTT
CGGGCTGGATCTTCAGCAGCAGGTCGGGCGGCGATGGGAGGAATTGGTGT
ACGAGCTTAACGGCGAGGTACGTGCGTGGTTTGGTGGGAGATAGGAGCGC
GCACTCGCGCAAGCATGAACTGAGGTAGGGATATTTGTGTTGCTCATGCG
CTCTGAAGGTGTGATTGGTGTGGGGCTATCCTTCTTTCAATGGTTTCATG
CCAATGTGCGACACAAATCCAACGAAACGCAGTTCATAAACGGGATGCTA
TTCTTTTATTCCTTACTCACCTCCTTCATACATGCATAGGTACTTTTCAA
CCGCGACCCCGTATTTGCACTCCCCGATCAAGGCACCAAGAGTAACCCTG
TGCTGGTAAGTCAAGTTGGAGAACGGAGCGAATTGCAGGATTCATCGATG
TTGAGTCTATTGACATAATTCTGTTGACTAAAGTGTTTACGAGTTGCGTT
TTCAGGTGTAGACCCTGTGGAACGAAGAAGGGCGCACTCTAGTCTGTATG
CCGGTGTTTGTAAAAAATCACTCACCCTTTTCTGTATTCTTCTGTATTCT
TTCCCGTTGTACCCGAACATGTAATAATTATAGGTTCCGTCCGGTGAGAA
CGAGCGTATCGTGGGCTATGAGGACCCGCATGTGCACCAGGTTTTCTGGT
TCAAGCTGCGCAAGGGAGACCTGGCATATGTGCCCAAGATCGACAAATAT
TTTTCCCTTTACAAGATCGACTAA
back to top

Coding sequence (CDS) from alignment at chr8:696826..697749+

>NO08G02390.1 ID=NO08G02390.1|Name=NO08G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr8:696826..697749+ (Nannochloropsis oceanica)
ATGCTCGCGTTAAAGCGCCTTGCCTCGGCCTCTGCTGCCCAGCGCCGGGC
CCTGGGTGCCGTGTCATCCGTGCGGCGCATGGGCACTCTTGGAGAGGAGC
TCAAAGGCGCTCCAAGCAAGGAGGAGGAGGCGAAGTACGCCAAGGTGATC
AAGGTAGGGGATAAACTTTACGGCGTGCCTGCTGTTCAGGAGGGCACCTT
CGGGCTGGATCTTCAGCAGCAGGTCGGGCGGCGATGGGAGGAATTGGTGT
ACGAGCTTAACGGCGAGGTACTTTTCAACCGCGACCCCGTATTTGCACTC
CCCGATCAAGGCACCAAGAGTAACCCTGTGCTGGTTCCGTCCGGTGAGAA
CGAGCGTATCGTGGGCTATGAGGACCCGCATGTGCACCAGGTTTTCTGGT
TCAAGCTGCGCAAGGGAGACCTGGCATATGTGCCCAAGATCGACAAATAT
TTTTCCCTTTACAAGATCGACTAA
back to top
Synonyms
Publications