NO08G02370.2, NO08G02370.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02370.2
Unique NameNO08G02370.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2876
Alignment locationchr8:691602..694940 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:691602..694940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02370.2 vs.
Match: EWM26722.1 (hypothetical protein Naga_100001g144 [Nannochloropsis gaditana])

HSP 1 Score: 341.3 bits (874), Expect = 3.300e-90
Identity = 182/301 (60.47%), Postives = 227/301 (75.42%), Query Frame = 0 
Query:    1 MYRRAALAAPAKVTAVASSPSSGEALTAGTSWKEWRTSAVLYVANALPASERRAILDRWGDITHKVTHE---ADAQLSTMRSDLYNAKAAEANALAEVGRLKQLISFHAKIKPEETMQATHPVLGQLVADMGYKKIYCASIKQLGDVVIWEQQRILRKERAHAIAREKARRSFPVKFPGIITLYQLPDGQYKLLDGQHRLAALKILADTGIINKDTNFCLVEVFALEKESEARALFLEINSAMPVKLIDMPDGIGSRPDIKCIIDGAMNRMLSRYPAFFKSSLNPKLPHINIDNLRDDLYQ 299
            M R A    PA V   +S+      ++     K+     +L +A  LP S+R+ I+ +W      +  +    + QL  MR ++  AKA+  +AL EV RL++ I+F  KIKPE++   +HPVLGQL+ADMGYKK+YCA+I QL DV IWE+QRILR+ERA +IAREK R+SFPVK PGIITLYQL D QYKLLDGQHRLAALKILAD+GII+KD NFCL+EVF LEKESEARALFLEINSAMPVKLID+PDG G+RPDIK IIDGA++ ++S++PAFFKSSLNPKLPH+NIDN+RD L+Q
Sbjct:    1 MRRHATSVVPAAVNNFSSASLPKAKISLSRLCKD----LILRMATMLPVSDRKEIMAQWMAQESSIYTDIATVENQLLRMRLEVETAKASHVSALQEVERLRERITFQTKIKPEDS---SHPVLGQLIADMGYKKVYCATINQLADVPIWEKQRILRRERAESIAREKMRQSFPVKLPGIITLYQLADKQYKLLDGQHRLAALKILADSGIISKDNNFCLLEVFTLEKESEARALFLEINSAMPVKLIDLPDG-GARPDIKGIIDGAVDNLVSQFPAFFKSSLNPKLPHVNIDNMRDALFQ 293
The following BLAST results are available for this feature:
BLAST of NO08G02370.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26722.13.300e-9060.47hypothetical protein Naga_100001g144 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02370NO08G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02370.2NO08G02370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02370.2.cds1NO08G02370.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02370.2.cds2NO08G02370.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02370.2 ID=NO08G02370.2|Name=NO08G02370.2|organism=Nannochloropsis oceanica|type=mRNA|length=2876bp
AAAGCCTCCGTGGGTATGCCTTGCGCTGCTTCCTGTTGATAGCATTGCGG
CACTAACGCACGCAAGTACCAGCAAGGAAGGAGACCATCCTTTTCTCTTT
TCATGACACGCCTCAAGACGCGATACCAAGCAACAGTTGCTCCGTACGCA
TGCATGCTTGAGACAGAGGATACGTAACCGTTTGCCATTTGCCGAAGCAG
ATAAAACACTAGCCACACATCATAAGGTTGTTGGTCGCTGATGAGCAGTT
ATAAAATCGATCTGTTCCGATCCCTCCCGGTCATACGATTACACTTTGTG
TACAATATGTAGATATATGTTTACATGTTTATACATTTTTTCAACCTTCA
GTATTTTTTCTCTTACTCTGCCGTTACATCCCACATTGCTTGATGATGTT
AATCTCAAGAGGCGCCACTTCTGTGTTCAAGATGAATTTATCGAATTAGA
ACAAGAGAGGTGCTCGCTCATTTCGATGCTCTGATCTTCTTTCTTTCTGA
CTGCTTGCTTGCACTATAGTTTACTTCCTGGTCAAATATCAACCAAACAA
CCTCATGTACCAAGCCAAGGGCACCTGGAAAACCTCGACGACATCCTCGG
CCACGATAGCCATGCATGTTAAGCCCGGGCCTTGGCGATGTGTCATGAAG
CCCACCAAGCCAGGTCGATTTTGACTGACCACCAACCTCATGCACACGAT
TTGTAGCGAAGTTGGTGACTGTCCTGTGTCGACGCCACATCACTGTATTT
GGAGCTGCGTGAACCCCGCCGCCCGTCCCAAGGGCACCTACGGATCTCGG
GGGAAAAGCAGGGTGGAATCGTTCCCCCAGTACCCTGTTGCTAAGAGGGT
GTACGCGTAAACAGGTCTCGGGGTTATACCAACACATATCAGGCACAGTC
GTAGGCAAAGGCCTCGGGGAGGGCGGCAATATCATGTACCGCCGTGCTGC
TTTGGCTGCACCGGCAAAGGTGACAGCGGTCGCCTCATCTCCATCAAGTG
GTGAAGCCTTGACCGCTGGGACAAGCTGGAAGGAGTGGCGCACCAGCGCA
GTCCTGTATGTGGCTAATGCCTTGCCTGCTAGCGAACGCCGTGCTATTTT
GGATCGATGGGGAGACATTACGCATAAGGTAACTCACGAAGCCGATGCAC
AACTTTCCACAATGCGATCGGATTTATACAATGCAAAGGCAGCCGAGGCT
AACGCGCTAGCAGAAGTGGGGCGACTCAAGCAATTGATTTCGTTTCATGC
CAAGATCAAGCCCGAGGAGACCATGCAGGCCACGCATCCTGTCTTGGGCC
AGCTCGTGGCCGACATGGGCTACAAGAAGATCTACTGTGCCTCCATCAAG
CAACTCGGGGATGTTGTGATCTGGGAGCAACAGCGTATTCTGCGGAAGGA
GAGAGCCCATGCAATAGCACGAGAGAAAGCCCGACGGTCGTTTCCAGTCA
AATTTCCCGGCATTATCACCCTCTACCAGCTGCCAGACGGGCAGTACAAG
CTTCTGGATGGACAACACAGGTTGGCGGCTTTAAAAATACTGGCTGACAC
AGGAATCATTAACAAAGACACGAATTTCTGCCTCGTGGAGGTGTTTGCCC
TTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCCTTGAAATTAACAGCGCC
ATGCCTGTGAAGCTCATCGACATGCCGGACGGAATAGGGTCGCGACCGGA
CATCAAATGTATCATCGACGGGGCCATGAATAGAATGCTGTCCAGATACC
CGGCCTTTTTCAAGAGCAGCCTCAATCCGAAATTGCCGCACATCAACATC
GACAACCTCCGGGACGATCTTTATCAGGTAAAGAATAAGAGGCAGAGGAG
AGGGGAGGGGGAGAGAAGAGAGGCATGTATCTCAAATCGGCAATCATAAA
CCGACCTGACTTGTTTTCAAGAATTAAATCGTAGGGAGGGATTTTAATGA
CACGTGCCGATAAGGGAAGTACAGAGAGTTATCCCCATATGAGCACGGTT
TACAGGTTTCGTTTTCTTCAACCACGTTGGGTGTCAAAGTGATCGATCTA
TTGCGATCGATAGTAACTGAAGCCTCTTTACGGACCAATTCAGCCATCAA
CTGACAAATCATCAACACAGCACCACGTCGTAGAGAGGCAAGGGCTGAAA
ACGGCCAGAGAGTTAGAAGAGTGGTTGCAGCAAGTGAACGAGATTCTTTC
GCAAAAGCACGACAAGGATTGGAAGCTTACTCTCAAGGGTCGCAATCCAT
TGGTGGTGGAAAAGGCACTCGACAAGGCGCGCAAAGGCAGTTTTTTCCTA
GGTATGGACCACACCTGGTTAGGTTGGGATGCATGTTGATGAGGATAAGA
AATTGCGGAAGTGGGAGATTTCTTGATGAATACCGCCCACTTACCCTAGC
ATGCTCGTTATTCTGGAGTCAAACCTTTTTAAAAAATGTGAGCCCTTTTT
TCGAGATGAGGCCTGAAGTTATCAGTCGCAGCGAAGGCTTAGGATTGCTG
ACGCGATCCCCAGTTTAGCTTGAGGTTTTGGATGGGATAACGGTAGGATT
TGTGGGAATTCCCTGATTGCCCTGATTGCCAATGCCTTTCAGCTGTGACA
CATTCACATGGCATGTGAAGGCTGATGTCCTCTGTTGTCTTGAAAGGGGA
AATTTGTGCTTGTTAACAGAAGGGAGATAGGGCCCCTGAACAAGGAAGAT
AAATAAGCTTCCGGAGATTTGGAGGTTCTCCTTTTTGAATCCAAGCTCTT
CTAGCAATAATGAGAGGCAAAGGCTGAATGTATTGAGGTGTATGGATGGG
CAAGGGGAAGGTCAGACGTTTCATTTCCGAAATTGCTGTGTTTGAAAGTA
AAATGCAAATATGGAAGGACAAAGGA
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protein sequence of NO08G02370.2

>NO08G02370.2-protein ID=NO08G02370.2-protein|Name=NO08G02370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MYRRAALAAPAKVTAVASSPSSGEALTAGTSWKEWRTSAVLYVANALPAS
ERRAILDRWGDITHKVTHEADAQLSTMRSDLYNAKAAEANALAEVGRLKQ
LISFHAKIKPEETMQATHPVLGQLVADMGYKKIYCASIKQLGDVVIWEQQ
RILRKERAHAIAREKARRSFPVKFPGIITLYQLPDGQYKLLDGQHRLAAL
KILADTGIINKDTNFCLVEVFALEKESEARALFLEINSAMPVKLIDMPDG
IGSRPDIKCIIDGAMNRMLSRYPAFFKSSLNPKLPHINIDNLRDDLYQVK
NKRQRRGEGERREACISNRQS*
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mRNA from alignment at chr8:691602..694940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02370.2 ID=NO08G02370.2|Name=NO08G02370.2|organism=Nannochloropsis oceanica|type=mRNA|length=3339bp|location=Sequence derived from alignment at chr8:691602..694940- (Nannochloropsis oceanica)
AAAGCCTCCGTGGGTATGCCTTGCGCTGCTTCCTGTTGATAGCATTGCGG
CACTAACGCACGCAAGTACCAGCAAGGAAGGAGACCATCCTTTTCTCTTT
TCATGACACGCCTCAAGACGCGATACCAAGCAACAGTTGCTCCGTACGCA
TGCATGCTTGAGACAGAGGATACGTAACCGTTTGCCATTTGCCGAAGCAG
ATAAAACACTAGCCACACATCATAAGGTTGTTGGTCGCTGATGAGCAGTT
ATAAAATCGATCTGTTCCGATCCCTCCCGGTCATACGATTACACTTTGTG
TACAATATGTAGATATATGTTTACATGTTTATACATTTTTTCAACCTTCA
GTATTTTTTCTCTTACTCTGCCGTTACATCCCACATTGCTTGATGATGTT
AATCTCAAGAGGCGCCACTTCTGTGTTCAAGATGAATTTATCGAATTAGA
ACAAGAGAGGTGCTCGCTCATTTCGATGCTCTGATCTTCTTTCTTTCTGA
CTGCTTGCTTGCACTATAGTTTACTTCCTGGTCAAATATCAACCAAACAA
CCTCATGTACCAAGCCAAGGGCACCTGGAAAACCTCGACGACATCCTCGG
CCACGATAGCCATGCATGTTAAGCCCGGGCCTTGGCGATGTGTCATGAAG
CCCACCAAGCCAGGTCGATTTTGACTGACCACCAACCTCATGCACACGAT
TTGTAGCGAAGTTGGTGACTGTCCTGTGTCGACGCCACATCACTGTATTT
GGAGCTGCGTGAACCCCGCCGCCCGTCCCAAGGGCACCTACGGATCTCGG
GGGAAAAGCAGGGTGGAATCGTTCCCCCAGTACCCTGTTGCTAAGAGGGT
GTACGCGTAAACAGGTCTCGGGGTTATACCAACACATATCAGGCACAGTC
GTAGGCAAAGGCCTCGGGGAGGGCGGCAATATCATGTACCGCCGTGCTGC
TTTGGCTGCACCGGCAAAGGTGACAGCGGTCGCCTCATCTCCATCAAGTG
GTGAAGCCTTGACCGCTGGGACAAGCTGGAAGGAGTGGCGCACCAGCGCA
GTCCTGTATGTGGCTAATGCCTTGCCTGCTAGCGAACGCCGTGCTATTTT
GGATCGATGGGGAGACATTACGCATAAGGTAACTCACGAAGCCGATGCAC
AACTTTCCACAATGCGATCGGATTTATACAATGCAAAGGCAGCCGAGGCT
AACGCGCTAGCAGAAGTGGGGCGACTCAAGTAAGTACTATGTATGACAAT
GCGGCACGGCACATTTACTTGCAATTTATCGTGTGGACCGTGCGGGTCAT
GCTTTTTGGCGTGGCCCTCATTATATTTCTCGAGACGGTCGAAAATCTGT
GGGTGCATCGGGGTGCATGTTGGGGCGTCGGTGCGAGAAGTGTACCATTT
GTTGTCTAGAAGACTCCTGTTTCAGATTGGTTAGCGACTCATTAAATTCC
ATCAAACCTCCTTCCTTTTTTACCATTTTCTCCTCAGGCATGTGCATGTA
CGCGCCGTCCCGTTCCCCTGCAACTCCCTGCTTCATCAAATAATATTTAT
TCTTTCCCCCCTTTTTTAAACCACAGAAAGCCTTTTAGTTGCAGCAACAA
ACGGATAAGGATATATGTTGCTCCGTCCTTATGCTCTCCCTCCTTCCCAC
CACACTCTCTCGAAATTTATCGATTTCACGACCTAAACACAGGCAATTGA
TTTCGTTTCATGCCAAGATCAAGCCCGAGGAGACCATGCAGGCCACGCAT
CCTGTCTTGGGCCAGCTCGTGGCCGACATGGGCTACAAGAAGATCTACTG
TGCCTCCATCAAGCAACTCGGGGATGTTGTGATCTGGGAGCAACAGCGTA
TTCTGCGGAAGGAGAGAGCCCATGCAATAGCACGAGAGAAAGCCCGACGG
TCGTTTCCAGTCAAATTTCCCGGCATTATCACCCTCTACCAGCTGCCAGA
CGGGCAGTACAAGCTTCTGGATGGACAACACAGGTTGGCGGCTTTAAAAA
TACTGGCTGACACAGGAATCATTAACAAAGACACGAATTTCTGCCTCGTG
GAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCCTTGA
AATTAACAGCGCCATGCCTGTGAAGCTCATCGACATGCCGGACGGAATAG
GGTCGCGACCGGACATCAAATGTATCATCGACGGGGCCATGAATAGAATG
CTGTCCAGATACCCGGCCTTTTTCAAGAGCAGCCTCAATCCGAAATTGCC
GCACATCAACATCGACAACCTCCGGGACGATCTTTATCAGGTAAAGAATA
AGAGGCAGAGGAGAGGGGAGGGGGAGAGAAGAGAGGCATGTATCTCAAAT
CGGCAATCATAAACCGACCTGACTTGTTTTCAAGAATTAAATCGTAGGGA
GGGATTTTAATGACACGTGCCGATAAGGGAAGTACAGAGAGTTATCCCCA
TATGAGCACGGTTTACAGGTTTCGTTTTCTTCAACCACGTTGGGTGTCAA
AGTGATCGATCTATTGCGATCGATAGTAACTGAAGCCTCTTTACGGACCA
ATTCAGCCATCAACTGACAAATCATCAACACAGCACCACGTCGTAGAGAG
GCAAGGGCTGAAAACGGCCAGAGAGTTAGAAGAGTGGTTGCAGCAAGTGA
ACGAGATTCTTTCGCAAAAGCACGACAAGGATTGGAAGCTTACTCTCAAG
GGTCGCAATCCATTGGTGGTGGAAAAGGCACTCGACAAGGCGCGCAAAGG
CAGTTTTTTCCTAGGTATGGACCACACCTGGTTAGGTTGGGATGCATGTT
GATGAGGATAAGAAATTGCGGAAGTGGGAGATTTCTTGATGAATACCGCC
CACTTACCCTAGCATGCTCGTTATTCTGGAGTCAAACCTTTTTAAAAAAT
GTGAGCCCTTTTTTCGAGATGAGGCCTGAAGTTATCAGTCGCAGCGAAGG
CTTAGGATTGCTGACGCGATCCCCAGTTTAGCTTGAGGTTTTGGATGGGA
TAACGGTAGGATTTGTGGGAATTCCCTGATTGCCCTGATTGCCAATGCCT
TTCAGCTGTGACACATTCACATGGCATGTGAAGGCTGATGTCCTCTGTTG
TCTTGAAAGGGGAAATTTGTGCTTGTTAACAGAAGGGAGATAGGGCCCCT
GAACAAGGAAGATAAATAAGCTTCCGGAGATTTGGAGGTTCTCCTTTTTG
AATCCAAGCTCTTCTAGCAATAATGAGAGGCAAAGGCTGAATGTATTGAG
GTGTATGGATGGGCAAGGGGAAGGTCAGACGTTTCATTTCCGAAATTGCT
GTGTTTGAAAGTAAAATGCAAATATGGAAGGACAAAGGA
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Coding sequence (CDS) from alignment at chr8:691602..694940-

>NO08G02370.2 ID=NO08G02370.2|Name=NO08G02370.2|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr8:691602..694940- (Nannochloropsis oceanica)
ATGTACCGCCGTGCTGCTTTGGCTGCACCGGCAAAGGTGACAGCGGTCGC
CTCATCTCCATCAAGTGGTGAAGCCTTGACCGCTGGGACAAGCTGGAAGG
AGTGGCGCACCAGCGCAGTCCTGTATGTGGCTAATGCCTTGCCTGCTAGC
GAACGCCGTGCTATTTTGGATCGATGGGGAGACATTACGCATAAGGTAAC
TCACGAAGCCGATGCACAACTTTCCACAATGCGATCGGATTTATACAATG
CAAAGGCAGCCGAGGCTAACGCGCTAGCAGAAGTGGGGCGACTCAAGCAA
TTGATTTCGTTTCATGCCAAGATCAAGCCCGAGGAGACCATGCAGGCCAC
GCATCCTGTCTTGGGCCAGCTCGTGGCCGACATGGGCTACAAGAAGATCT
ACTGTGCCTCCATCAAGCAACTCGGGGATGTTGTGATCTGGGAGCAACAG
CGTATTCTGCGGAAGGAGAGAGCCCATGCAATAGCACGAGAGAAAGCCCG
ACGGTCGTTTCCAGTCAAATTTCCCGGCATTATCACCCTCTACCAGCTGC
CAGACGGGCAGTACAAGCTTCTGGATGGACAACACAGGTTGGCGGCTTTA
AAAATACTGGCTGACACAGGAATCATTAACAAAGACACGAATTTCTGCCT
CGTGGAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCC
TTGAAATTAACAGCGCCATGCCTGTGAAGCTCATCGACATGCCGGACGGA
ATAGGGTCGCGACCGGACATCAAATGTATCATCGACGGGGCCATGAATAG
AATGCTGTCCAGATACCCGGCCTTTTTCAAGAGCAGCCTCAATCCGAAAT
TGCCGCACATCAACATCGACAACCTCCGGGACGATCTTTATCAGGTAAAG
AATAAGAGGCAGAGGAGAGGGGAGGGGGAGAGAAGAGAGGCATGTATCTC
AAATCGGCAATCATAA
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Synonyms
Publications