NO08G02260.1, NO08G02260.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G02260.1
Unique Name	NO08G02260.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2079
Alignment location	chr8:662042..664120 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:662042..664120 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G02260.1 vs.
Match: EWM26670.1 (Na+/H+ antiporter [Nannochloropsis gaditana])

HSP 1 Score: 1162.5 bits (3006), Expect = 0.000e+0
Identity = 600/689 (87.08%), Postives = 648/689 (94.05%), Query Frame = 0

Query:    2 MAESLPVAQRVQAELIPSEPFRPDLGVGRDAKLTKVLELNDGAVDFVRVNINALTLSAVKKMNDKGADCCLVFDMDGGLAGIFTERDYIRKIVEANRATKETPIAEVMTSADKIVSAPPELTVGECMAMMVQNKIRHVPIRAMPQGEVMGVISTTDLVNTMKRDDESLAGALPIGALEPALINDLLSRTRERANEMAVKGGPKLGAQDLVRGGLVGVGAGVLALLLQGNWLHDHEVLSMCAIFCLGYVSIIFENIFEFNKAAVGLLMAVALWVIYAGTAGGAGIASIGALKELSEHVAEVSEIIFFLLGAMTIVEIVDSHQGFRVVTDLIKTTSKKALMWTIGLLAFFMSSVLDNLTTTIVLLSLLRKLIPNPEVRKLFGALVVIAANAGGAWTPIGDLTTTMLWINGQISAFPTMRDLVLPSLVSLVISTYLLTWGMPNSDPEFEKEMAASQQNAVTTELAPRGKLVFATGLAGLLSVPVFKALTGLPPYLGMLSALGVMWVLTDTIHAGESEEELKVPAALAKIDVSGILFFFGILLSVGALDSAGILQSLASFLQTSIPSEKVIATVIGIFSAIIDNVPLVAATMSMYDINTTPMDAPLWQLVAYCAGTGGSLLVIGSAAGVALMGLEKVDFLWYAKKITASAFVGYMGGVGTYLALKFGLGSAVSAAVLPIVASFFDGRIPLIGG 691
            MA+S P  Q  QAE++PSEPFRPDLGVGR+AKLTKVLELN+GAV+FVRV ++ LTLSAVKKMN+KGADCCL+F+ DG LAGIFTERDYIRKIVEA R TKETPI EVMTSAD +VSAPP++TVGECM++MVQNKIRH+P+RA+P+G VMGVISTTDLVNTMK DDESLAGA PIGALEP+L+ D+LSRTRERANE+AVK GP+LG QDLVRGG VGVGAGVLALLLQGNWLHDHEVLSMCAIF LGYVSIIFENIFEFNKAAVGLLMAVALWVIYAGTAG  G+AS GALKEL+EHV+EVSEIIFFLLGAMTIVEIVDSHQGFRVVTDLIKT SKKALMWT+GLLAFFMSSVLDNLTTTIVLLSLLRKLIPN E RKLFGALVVIA+NAGGAWTPIGDLTTTMLWINGQISA PTMRDL +PSLVSL+ISTYLLTWG+P++D EFE+EMA +QQNAV TELAPRGKLVFATGL GLLSVPVFKALTGLPPYLGMLSALGVMWVLTDTIHAGE EEELKVPAALAKIDVSGILFFFGILLSVGALDSAGILQSLASFLQ+ IPS+K+IAT+IGIFSAIIDNVPLVAATMSMYD+ TTPMDAPLWQLVAYCAGTGGSLLVIGSAAGVALMGLEKVDFLWY KKIT +AF+GYMGGVGTYLA+K+GL SAVSAAVLPIV+S FDG+IPLI G
Sbjct:   50 MADSAPPTQLTQAEIVPSEPFRPDLGVGREAKLTKVLELNEGAVNFVRVRVDELTLSAVKKMNEKGADCCLIFNPDGSLAGIFTERDYIRKIVEAQRRTKETPIEEVMTSADLVVSAPPDMTVGECMSLMVQNKIRHIPVRAVPEGVVMGVISTTDLVNTMKLDDESLAGAFPIGALEPSLVQDILSRTRERANELAVKAGPRLGMQDLVRGGWVGVGAGVLALLLQGNWLHDHEVLSMCAIFGLGYVSIIFENIFEFNKAAVGLLMAVALWVIYAGTAGAQGVASAGALKELAEHVSEVSEIIFFLLGAMTIVEIVDSHQGFRVVTDLIKTKSKKALMWTVGLLAFFMSSVLDNLTTTIVLLSLLRKLIPNTEARKLFGALVVIASNAGGAWTPIGDLTTTMLWINGQISALPTMRDLAVPSLVSLLISTYLLTWGIPDTDREFEEEMARNQQNAVNTELAPRGKLVFATGLTGLLSVPVFKALTGLPPYLGMLSALGVMWVLTDTIHAGEEEEELKVPAALAKIDVSGILFFFGILLSVGALDSAGILQSLASFLQSHIPSDKIIATLIGIFSAIIDNVPLVAATMSMYDLQTTPMDAPLWQLVAYCAGTGGSLLVIGSAAGVALMGLEKVDFLWYFKKITFAAFIGYMGGVGTYLAVKYGLASAVSAAVLPIVSSVFDGKIPLISG 738

The following BLAST results are available for this feature:

BLAST of NO08G02260.1 vs.

BLAST of NO08G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26670.1	0.000e+0	87.08	Na+/H+ antiporter [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G02260	NO08G02260	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02260.1	NO08G02260.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02260.1.cds1	NO08G02260.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:662042..664120-
coding sequence from alignment at chr8:662042..664120-

mRNA sequence

>NO08G02260.1 ID=NO08G02260.1|Name=NO08G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp
ATGATGGCCGAGAGCTTGCCTGTCGCACAGCGGGTCCAGGCGGAGCTCAT
ACCCTCGGAACCCTTCAGGCCCGACTTAGGCGTGGGACGCGACGCCAAAC
TGACCAAGGTTTTGGAGCTGAACGACGGTGCCGTGGACTTCGTGCGCGTT
AATATCAATGCGTTGACGCTGTCGGCTGTGAAAAAGATGAATGATAAGGG
CGCGGATTGCTGCCTCGTCTTTGACATGGACGGTGGCTTGGCGGGGATTT
TCACGGAGCGTGACTACATTCGCAAGATTGTTGAGGCCAACCGCGCTACA
AAGGAGACTCCCATCGCCGAGGTCATGACGTCGGCTGATAAAATCGTGAG
CGCACCGCCTGAACTGACCGTCGGTGAATGCATGGCAATGATGGTTCAAA
ACAAGATCCGGCACGTGCCTATTCGCGCCATGCCCCAAGGTGAGGTGATG
GGCGTGATTTCTACAACTGACCTGGTCAACACGATGAAGCGCGATGACGA
GAGCTTGGCGGGGGCGTTGCCTATTGGCGCCCTGGAGCCCGCTCTGATCA
ATGACTTGCTCAGCCGCACCCGCGAGCGGGCCAATGAGATGGCTGTCAAG
GGTGGGCCGAAGCTTGGGGCGCAGGATTTAGTGCGTGGCGGTTTGGTGGG
TGTGGGTGCAGGGGTGCTAGCTTTGTTGCTGCAGGGCAACTGGTTGCATG
ACCACGAGGTGCTTTCGATGTGTGCGATTTTCTGCTTGGGTTATGTGAGT
ATCATCTTTGAGAATATTTTTGAATTCAATAAGGCGGCCGTAGGTCTGTT
GATGGCCGTAGCACTCTGGGTCATTTATGCGGGCACGGCAGGCGGGGCGG
GTATTGCATCGATTGGCGCATTAAAGGAGCTGTCGGAGCACGTGGCCGAG
GTGTCGGAGATCATTTTTTTCTTGCTGGGCGCCATGACGATTGTGGAGAT
TGTGGACTCGCATCAAGGCTTCCGCGTGGTGACAGACCTGATCAAGACCA
CCAGTAAGAAGGCCCTTATGTGGACTATTGGCCTCTTGGCATTTTTCATG
AGCTCCGTGCTCGACAACCTGACGACCACCATTGTTCTGCTCTCACTACT
CCGCAAGCTTATTCCAAATCCCGAGGTCCGCAAGCTCTTCGGTGCTTTGG
TAGTGATAGCCGCCAATGCCGGCGGGGCCTGGACGCCCATCGGCGACCTT
ACCACGACCATGCTGTGGATCAATGGTCAGATCTCCGCCTTTCCCACCAT
GCGGGACCTGGTCTTACCATCCCTCGTCTCGCTCGTCATCAGCACCTATC
TCCTCACTTGGGGCATGCCGAATTCGGACCCGGAATTCGAGAAAGAAATG
GCGGCCAGCCAACAAAACGCCGTCACCACTGAGCTGGCCCCCCGTGGTAA
GCTCGTCTTTGCCACGGGCCTAGCTGGCCTTCTAAGTGTTCCTGTTTTCA
AGGCCTTGACGGGCCTACCGCCCTACCTGGGCATGCTCTCCGCTTTGGGG
GTTATGTGGGTCCTGACTGATACCATCCACGCCGGTGAGTCAGAAGAGGA
GCTGAAGGTGCCCGCAGCGTTGGCCAAGATTGACGTATCAGGGATTTTGT
TTTTCTTTGGTATTTTGCTGTCTGTGGGCGCACTGGACTCGGCAGGCATC
CTGCAGTCTCTGGCCTCCTTTCTCCAGACAAGTATTCCCTCGGAAAAAGT
TATCGCCACTGTCATTGGTATCTTCAGCGCCATAATTGATAATGTGCCCT
TGGTGGCTGCCACTATGTCGATGTACGACATCAACACCACGCCCATGGAT
GCCCCGCTTTGGCAGCTTGTTGCCTATTGCGCCGGCACAGGTGGTTCTCT
CCTGGTCATTGGAAGTGCTGCCGGCGTGGCTCTGATGGGCTTGGAGAAGG
TGGACTTCTTGTGGTATGCCAAGAAGATCACGGCCTCGGCTTTTGTGGGA
TACATGGGCGGCGTTGGCACCTATTTGGCGTTGAAATTTGGACTGGGTTC
GGCAGTGAGTGCTGCAGTTTTGCCCATCGTTGCATCCTTTTTTGATGGAA
GGATTCCCCTGATTGGCGGCGGCATGTAA

protein sequence of NO08G02260.1

>NO08G02260.1-protein ID=NO08G02260.1-protein|Name=NO08G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MMAESLPVAQRVQAELIPSEPFRPDLGVGRDAKLTKVLELNDGAVDFVRV
NINALTLSAVKKMNDKGADCCLVFDMDGGLAGIFTERDYIRKIVEANRAT
KETPIAEVMTSADKIVSAPPELTVGECMAMMVQNKIRHVPIRAMPQGEVM
GVISTTDLVNTMKRDDESLAGALPIGALEPALINDLLSRTRERANEMAVK
GGPKLGAQDLVRGGLVGVGAGVLALLLQGNWLHDHEVLSMCAIFCLGYVS
IIFENIFEFNKAAVGLLMAVALWVIYAGTAGGAGIASIGALKELSEHVAE
VSEIIFFLLGAMTIVEIVDSHQGFRVVTDLIKTTSKKALMWTIGLLAFFM
SSVLDNLTTTIVLLSLLRKLIPNPEVRKLFGALVVIAANAGGAWTPIGDL
TTTMLWINGQISAFPTMRDLVLPSLVSLVISTYLLTWGMPNSDPEFEKEM
AASQQNAVTTELAPRGKLVFATGLAGLLSVPVFKALTGLPPYLGMLSALG
VMWVLTDTIHAGESEEELKVPAALAKIDVSGILFFFGILLSVGALDSAGI
LQSLASFLQTSIPSEKVIATVIGIFSAIIDNVPLVAATMSMYDINTTPMD
APLWQLVAYCAGTGGSLLVIGSAAGVALMGLEKVDFLWYAKKITASAFVG
YMGGVGTYLALKFGLGSAVSAAVLPIVASFFDGRIPLIGGGM*

mRNA from alignment at chr8:662042..664120-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G02260.1 ID=NO08G02260.1|Name=NO08G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at chr8:662042..664120- (Nannochloropsis oceanica)
ATGATGGCCGAGAGCTTGCCTGTCGCACAGCGGGTCCAGGCGGAGCTCAT
ACCCTCGGAACCCTTCAGGCCCGACTTAGGCGTGGGACGCGACGCCAAAC
TGACCAAGGTTTTGGAGCTGAACGACGGTGCCGTGGACTTCGTGCGCGTT
AATATCAATGCGTTGACGCTGTCGGCTGTGAAAAAGATGAATGATAAGGG
CGCGGATTGCTGCCTCGTCTTTGACATGGACGGTGGCTTGGCGGGGATTT
TCACGGAGCGTGACTACATTCGCAAGATTGTTGAGGCCAACCGCGCTACA
AAGGAGACTCCCATCGCCGAGGTCATGACGTCGGCTGATAAAATCGTGAG
CGCACCGCCTGAACTGACCGTCGGTGAATGCATGGCAATGATGGTTCAAA
ACAAGATCCGGCACGTGCCTATTCGCGCCATGCCCCAAGGTGAGGTGATG
GGCGTGATTTCTACAACTGACCTGGTCAACACGATGAAGCGCGATGACGA
GAGCTTGGCGGGGGCGTTGCCTATTGGCGCCCTGGAGCCCGCTCTGATCA
ATGACTTGCTCAGCCGCACCCGCGAGCGGGCCAATGAGATGGCTGTCAAG
GGTGGGCCGAAGCTTGGGGCGCAGGATTTAGTGCGTGGCGGTTTGGTGGG
TGTGGGTGCAGGGGTGCTAGCTTTGTTGCTGCAGGGCAACTGGTTGCATG
ACCACGAGGTGCTTTCGATGTGTGCGATTTTCTGCTTGGGTTATGTGAGT
ATCATCTTTGAGAATATTTTTGAATTCAATAAGGCGGCCGTAGGTCTGTT
GATGGCCGTAGCACTCTGGGTCATTTATGCGGGCACGGCAGGCGGGGCGG
GTATTGCATCGATTGGCGCATTAAAGGAGCTGTCGGAGCACGTGGCCGAG
GTGTCGGAGATCATTTTTTTCTTGCTGGGCGCCATGACGATTGTGGAGAT
TGTGGACTCGCATCAAGGCTTCCGCGTGGTGACAGACCTGATCAAGACCA
CCAGTAAGAAGGCCCTTATGTGGACTATTGGCCTCTTGGCATTTTTCATG
AGCTCCGTGCTCGACAACCTGACGACCACCATTGTTCTGCTCTCACTACT
CCGCAAGCTTATTCCAAATCCCGAGGTCCGCAAGCTCTTCGGTGCTTTGG
TAGTGATAGCCGCCAATGCCGGCGGGGCCTGGACGCCCATCGGCGACCTT
ACCACGACCATGCTGTGGATCAATGGTCAGATCTCCGCCTTTCCCACCAT
GCGGGACCTGGTCTTACCATCCCTCGTCTCGCTCGTCATCAGCACCTATC
TCCTCACTTGGGGCATGCCGAATTCGGACCCGGAATTCGAGAAAGAAATG
GCGGCCAGCCAACAAAACGCCGTCACCACTGAGCTGGCCCCCCGTGGTAA
GCTCGTCTTTGCCACGGGCCTAGCTGGCCTTCTAAGTGTTCCTGTTTTCA
AGGCCTTGACGGGCCTACCGCCCTACCTGGGCATGCTCTCCGCTTTGGGG
GTTATGTGGGTCCTGACTGATACCATCCACGCCGGTGAGTCAGAAGAGGA
GCTGAAGGTGCCCGCAGCGTTGGCCAAGATTGACGTATCAGGGATTTTGT
TTTTCTTTGGTATTTTGCTGTCTGTGGGCGCACTGGACTCGGCAGGCATC
CTGCAGTCTCTGGCCTCCTTTCTCCAGACAAGTATTCCCTCGGAAAAAGT
TATCGCCACTGTCATTGGTATCTTCAGCGCCATAATTGATAATGTGCCCT
TGGTGGCTGCCACTATGTCGATGTACGACATCAACACCACGCCCATGGAT
GCCCCGCTTTGGCAGCTTGTTGCCTATTGCGCCGGCACAGGTGGTTCTCT
CCTGGTCATTGGAAGTGCTGCCGGCGTGGCTCTGATGGGCTTGGAGAAGG
TGGACTTCTTGTGGTATGCCAAGAAGATCACGGCCTCGGCTTTTGTGGGA
TACATGGGCGGCGTTGGCACCTATTTGGCGTTGAAATTTGGACTGGGTTC
GGCAGTGAGTGCTGCAGTTTTGCCCATCGTTGCATCCTTTTTTGATGGAA
GGATTCCCCTGATTGGCGGCGGCATGTAA

Coding sequence (CDS) from alignment at chr8:662042..664120-

>NO08G02260.1 ID=NO08G02260.1|Name=NO08G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at chr8:662042..664120- (Nannochloropsis oceanica)
ATGATGGCCGAGAGCTTGCCTGTCGCACAGCGGGTCCAGGCGGAGCTCAT
ACCCTCGGAACCCTTCAGGCCCGACTTAGGCGTGGGACGCGACGCCAAAC
TGACCAAGGTTTTGGAGCTGAACGACGGTGCCGTGGACTTCGTGCGCGTT
AATATCAATGCGTTGACGCTGTCGGCTGTGAAAAAGATGAATGATAAGGG
CGCGGATTGCTGCCTCGTCTTTGACATGGACGGTGGCTTGGCGGGGATTT
TCACGGAGCGTGACTACATTCGCAAGATTGTTGAGGCCAACCGCGCTACA
AAGGAGACTCCCATCGCCGAGGTCATGACGTCGGCTGATAAAATCGTGAG
CGCACCGCCTGAACTGACCGTCGGTGAATGCATGGCAATGATGGTTCAAA
ACAAGATCCGGCACGTGCCTATTCGCGCCATGCCCCAAGGTGAGGTGATG
GGCGTGATTTCTACAACTGACCTGGTCAACACGATGAAGCGCGATGACGA
GAGCTTGGCGGGGGCGTTGCCTATTGGCGCCCTGGAGCCCGCTCTGATCA
ATGACTTGCTCAGCCGCACCCGCGAGCGGGCCAATGAGATGGCTGTCAAG
GGTGGGCCGAAGCTTGGGGCGCAGGATTTAGTGCGTGGCGGTTTGGTGGG
TGTGGGTGCAGGGGTGCTAGCTTTGTTGCTGCAGGGCAACTGGTTGCATG
ACCACGAGGTGCTTTCGATGTGTGCGATTTTCTGCTTGGGTTATGTGAGT
ATCATCTTTGAGAATATTTTTGAATTCAATAAGGCGGCCGTAGGTCTGTT
GATGGCCGTAGCACTCTGGGTCATTTATGCGGGCACGGCAGGCGGGGCGG
GTATTGCATCGATTGGCGCATTAAAGGAGCTGTCGGAGCACGTGGCCGAG
GTGTCGGAGATCATTTTTTTCTTGCTGGGCGCCATGACGATTGTGGAGAT
TGTGGACTCGCATCAAGGCTTCCGCGTGGTGACAGACCTGATCAAGACCA
CCAGTAAGAAGGCCCTTATGTGGACTATTGGCCTCTTGGCATTTTTCATG
AGCTCCGTGCTCGACAACCTGACGACCACCATTGTTCTGCTCTCACTACT
CCGCAAGCTTATTCCAAATCCCGAGGTCCGCAAGCTCTTCGGTGCTTTGG
TAGTGATAGCCGCCAATGCCGGCGGGGCCTGGACGCCCATCGGCGACCTT
ACCACGACCATGCTGTGGATCAATGGTCAGATCTCCGCCTTTCCCACCAT
GCGGGACCTGGTCTTACCATCCCTCGTCTCGCTCGTCATCAGCACCTATC
TCCTCACTTGGGGCATGCCGAATTCGGACCCGGAATTCGAGAAAGAAATG
GCGGCCAGCCAACAAAACGCCGTCACCACTGAGCTGGCCCCCCGTGGTAA
GCTCGTCTTTGCCACGGGCCTAGCTGGCCTTCTAAGTGTTCCTGTTTTCA
AGGCCTTGACGGGCCTACCGCCCTACCTGGGCATGCTCTCCGCTTTGGGG
GTTATGTGGGTCCTGACTGATACCATCCACGCCGGTGAGTCAGAAGAGGA
GCTGAAGGTGCCCGCAGCGTTGGCCAAGATTGACGTATCAGGGATTTTGT
TTTTCTTTGGTATTTTGCTGTCTGTGGGCGCACTGGACTCGGCAGGCATC
CTGCAGTCTCTGGCCTCCTTTCTCCAGACAAGTATTCCCTCGGAAAAAGT
TATCGCCACTGTCATTGGTATCTTCAGCGCCATAATTGATAATGTGCCCT
TGGTGGCTGCCACTATGTCGATGTACGACATCAACACCACGCCCATGGAT
GCCCCGCTTTGGCAGCTTGTTGCCTATTGCGCCGGCACAGGTGGTTCTCT
CCTGGTCATTGGAAGTGCTGCCGGCGTGGCTCTGATGGGCTTGGAGAAGG
TGGACTTCTTGTGGTATGCCAAGAAGATCACGGCCTCGGCTTTTGTGGGA
TACATGGGCGGCGTTGGCACCTATTTGGCGTTGAAATTTGGACTGGGTTC
GGCAGTGAGTGCTGCAGTTTTGCCCATCGTTGCATCCTTTTTTGATGGAA
GGATTCCCCTGATTGGCGGCGGCATGTAA

Synonyms

Publications