NO08G02200.2, NO08G02200.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02200.2
Unique NameNO08G02200.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2301
Alignment locationchr8:648980..651393 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:648980..651393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02200.2 vs.
Match: EWM26582.1 (hypothetical protein Naga_100001g126 [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 3.000e-61
Identity = 172/445 (38.65%), Postives = 244/445 (54.83%), Query Frame = 0 
Query:   73 LSTLTAQMQ-----RLQKCKSHWKGHLTD-----LLPWMEVVLVEGKTVDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESVIQPPASERDVVIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNTELLGLPSSSSS----LSPHHSSSDSG-----SSNPYVALIARFLLSYGPAAKVCVSIFKQTSEGAAEKEVVNTSTNKNHRAPEEGHAYDLPC-VRGSLTAPSQRQDILDRGFVPTFSMTSGKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSSSSKVPGMGITTVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLWLAVEGRLPEGGAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHHTFTYFVAHVSPEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIA 498
            L+TL   M+     RL  C+  W+G   +     +L W ++V  E +TV + L++L  +N +P   LSV  +L+ +R  +  W+  +    PAS R V +   R ++L + F HL+ K+P RF  +ADQVM LS+YNTE+LGL  +  S     SP    +D G     S NPY+ LI  FLLSYGP A++CV+IF  +S+G+   E   T      R  EE  +Y LP      + +  QR+    R F+P FSMTS +  AA+G ++  S     + SS S+  ++  + RL+S + S        + G +                 + G P WFW LC  SGLW A++GR+PEGGAQRFSL G     G K   +   ++P++GTFIHQSG+   ++YFVAH+SP ERLVVAFGDR  PA D+ V +FL  A S L D +A
Sbjct:  114 LATLLRNMRLVVGLRLWLCR--WEGLRKEEPPNFMLHWRDLVSAEAETVALSLQSLVLMNSYPYQFLSVVAKLVALRAKLLRWKAATAAHGPASARGVAVGETRLRVLIRQFYHLVYKLPFRFDKIADQVMDLSQYNTEILGLCGTLDSPFQYSSPRRDRADGGKTETSSCNPYMDLIVDFLLSYGPTAQICVAIF-LSSKGSGTGEASVT------RGLEENCSYALPVGPDEEIPSSPQRKRPDRRDFLPVFSMTSFQ--AATGGRRSDSEHPPPMLSSLSSSLADAAIPRLNSGAVSSF------SSGLQPDSRSQIAEDGKQCLVGEGGLPHWFWDLCRCSGLWPAIQGRIPEGGAQRFSLLGV----GSKEHGTCTPSAPMDGTFIHQSGRTMAYSYFVAHISPWERLVVAFGDRTRPATDRVVLTFLMAALSILKDSVA 537
The following BLAST results are available for this feature:
BLAST of NO08G02200.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26582.13.000e-6138.65hypothetical protein Naga_100001g126 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02200NO08G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02200.2NO08G02200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02200.2.cds1NO08G02200.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02200.2 ID=NO08G02200.2|Name=NO08G02200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2301bp
GGGTTAGAGCTCTCTGGTCGCGTAAAACGCTTGGATACAATACGAGACGT
AAAGCTAAACGGCAGCAGGTTATTTTTGATTGCTCGCTCTTTCGTTCCCC
AGAAAGCGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAA
GCCAACGCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGG
AATGGACTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATA
CAACACAAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCG
ACGACGACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTG
GTCTTGGCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCC
TGCGCTTGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATC
AGGTCCAAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAAC
TTGGTATCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTAGGTTTT
TCGTAGGAAAATAGTTAGCTAGACGTCTGGGTATTATTCTGGCGCGGACC
TGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGAAGAGGTCCATTCA
GACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATGCCAAATCGGCTTT
TGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAAATTCGGATATGGC
TTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGGCCCCTTGTCCGCG
GCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGCAAGACCCACTGTC
CACCTTGACAGCGCAGATGCAACGCTTACAAAAATGTAAATCGCATTGGA
AAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGTGGTGCTCGTGGAA
GGCAAGACGGTCGATATATGTTTACGAGCGCTCGCATCATTGAACCGTCA
CCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTCCGCATGCGCAAGG
CAATCGGCCTGTGGGAGGACGAATCAGTTATACAACCTCCAGCTTCAGAG
AGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTTTGCGTCAGCTGTT
CCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCACGCTGTGGCTGATC
AGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTTGGGTCTGCCCTCA
TCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTGACAGTGGCAGCTC
CAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTCTCATACGGCCCCG
CCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAGTGAAGGAGCGGCG
GAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACCACCGGGCACCGGA
AGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGCTCACTGACAGCAC
CATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGTGCCAACCTTTTCC
ATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCAAGCAGCACAGCAG
CGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCCTTGGCCTCCGAGC
CCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAAAGTGCCTGGCATG
GGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCATTTACCTCCACCTC
CTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCACCACCCTGGTTTT
GGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGTAGAAGGGCGATTG
CCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCGCCAGGGGGGAAGG
AGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCACCTTTGGAAGGAA
CGTTCATCCATCAAAGCGGCAAACACCACACCTTCACCTACTTTGTTGCG
CATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTGGAGACCGCATCTG
TCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGGACGGCGACATCTT
TCCTCAACGATAGAATTGCACACGGGGTGTAAATTTTGAGTGCGGGCTTA
ATATTACAAATTTTCATGTAGAAGGGGACACCCAAAAAAAAAAAAGAGTA
CAGAATAATCATATGCCCTGTTTTATTTTCATGGGTCGTCAAATTTATTC
AACTACATAGGGAAATAGTAAAATGATTATTATTCACTAGATGGTGGACC
G
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protein sequence of NO08G02200.2

>NO08G02200.2-protein ID=NO08G02200.2-protein|Name=NO08G02200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MYEEVHSDLGTLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDS
SAGPLSAAPIEGPEAQAARQDPLSTLTAQMQRLQKCKSHWKGHLTDLLPW
MEVVLVEGKTVDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESV
IQPPASERDVVIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNT
ELLGLPSSSSSLSPHHSSSDSGSSNPYVALIARFLLSYGPAAKVCVSIFK
QTSEGAAEKEVVNTSTNKNHRAPEEGHAYDLPCVRGSLTAPSQRQDILDR
GFVPTFSMTSGKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSS
SSKVPGMGITTVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLW
LAVEGRLPEGGAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHH
TFTYFVAHVSPEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIAHGV
*
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mRNA from alignment at chr8:648980..651393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02200.2 ID=NO08G02200.2|Name=NO08G02200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp|location=Sequence derived from alignment at chr8:648980..651393+ (Nannochloropsis oceanica)
GGGTTAGAGCTCTCTGGTCGCGTAAAACGCTTGGATACAATACGAGACGT
AAAGCTAAACGGCAGCAGGTTATTTTTGATTGCTCGCTCTTTCGTTCCCC
AGAAAGCGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAA
GCCAACGCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGG
AATGGACTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATA
CAACACAAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCG
ACGACGACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTG
GTCTTGGCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCC
TGCGCTTGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATC
AGGTCCAAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAAC
TTGGTATCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTAGGTTTT
TCGTAGGAAAATAGTTAGCTAGACGTCTGGGTACGTTGCCATCACAGAAG
ACTCCTTCCCCACCCACATCTAATCTTGCATTCGTAGCGAAGAAAAACAA
ATGGAATATTACATCGACTCACCTAAGATGTGTCCACGCACAGGTATTAT
TCTGGCGCGGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGA
AGAGGTCCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATG
CCAAATCGGCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAA
ATTCGGATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGG
CCCCTTGTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGC
AAGACCCACTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATGT
AAATCGCATTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGT
GGTGCTCGTGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCAT
CATTGAACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTC
CGCATGCGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAACC
TCCAGCTTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTT
TGCGTCAGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCAC
GCTGTGGCTGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTT
GGGTCTGCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTG
ACAGTGGCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTC
TCATACGGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAG
TGAAGGAGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACC
ACCGGGCACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGC
TCACTGACAGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGT
GCCAACCTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCA
AGCAGCACAGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCC
TTGGCCTCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAA
AGTGCCTGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCAT
TTACCTCCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCA
CCACCCTGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGT
AGAAGGGCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCG
CCAGGGGGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCA
CCTTTGGAAGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCAC
CTACTTTGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTG
GAGACCGCATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGG
ACGGCGACATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAAATTTT
GAGTGCGGGCTTAATATTACAAATTTTCATGTAGAAGGGGACACCCAAAA
AAAAAAAAGAGTACAGAATAATCATATGCCCTGTTTTATTTTCATGGGTC
GTCAAATTTATTCAACTACATAGGGAAATAGTAAAATGATTATTATTCAC
TAGATGGTGGACCG
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Coding sequence (CDS) from alignment at chr8:648980..651393+

>NO08G02200.2 ID=NO08G02200.2|Name=NO08G02200.2|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr8:648980..651393+ (Nannochloropsis oceanica)
ATGTACGAAGAGGTCCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCA
ACCACATGCCAAATCGGCTTTTGTACCTTTGCTACAAATTGCACAAATCG
TTGTCGAAATTCGGATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCT
TCTGCCGGCCCCTTGTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGC
CGCCAGGCAAGACCCACTGTCCACCTTGACAGCGCAGATGCAACGCTTAC
AAAAATGTAAATCGCATTGGAAAGGGCACCTCACGGATCTACTTCCTTGG
ATGGAGGTGGTGCTCGTGGAAGGCAAGACGGTCGATATATGTTTACGAGC
GCTCGCATCATTGAACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCC
AGCTGCTCCGCATGCGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTT
ATACAACCTCCAGCTTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATA
CCAGCTTTTGCGTCAGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGC
GCTTTCACGCTGTGGCTGATCAGGTCATGCCCCTGTCCAAGTATAATACC
GAGCTGTTGGGTCTGCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAG
CAGCAGTGACAGTGGCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCT
TTCTGCTCTCATACGGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAA
CAGACCAGTGAAGGAGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAA
CAAAAACCACCGGGCACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCG
TAAGGGGCTCACTGACAGCACCATCGCAGCGGCAGGATATCTTGGACCGT
GGATTTGTGCCAACCTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAG
CGGCAGCAAGCAGCACAGCAGCGCGCGATACGTGACGGTATCGTCCTCAT
CTTCCGCCTTGGCCTCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCG
TCATCAAAAGTGCCTGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAG
TGGATCATTTACCTCCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACC
ACGGCCCACCACCCTGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGG
TTGGCAGTAGAAGGGCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCT
TTCGGGCGCCAGGGGGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCA
GGGCGTCACCTTTGGAAGGAACGTTCATCCATCAAAGCGGCAAACACCAC
ACCTTCACCTACTTTGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGT
GGCTTTTGGAGACCGCATCTGTCCTGCAAATGACAAGACAGTGACTTCCT
TTCTCAGGACGGCGACATCTTTCCTCAACGATAGAATTGCACACGGGGTG
TAA
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Synonyms
Publications