NO08G02130.1, NO08G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02130.1
Unique NameNO08G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1128
Alignment locationchr8:627775..628902 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:627775..628902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02130.1 vs.
Match: EWM26699.1 (hypothetical protein Naga_100001g118 [Nannochloropsis gaditana])

HSP 1 Score: 495.4 bits (1274), Expect = 1.600e-136
Identity = 245/365 (67.12%), Postives = 293/365 (80.27%), Query Frame = 0 
Query:   10 IMDLVSTFPVLTAVCATMLLLIAIVQSSTTVSHFYPSSFELSTLYGKLIVSPLYKNWRWKSQLKKDMKLNPHLEFKLPFEADTANVQAYVDMLGLQEKAAPTELPFAYVASCFLYPTVCLLSQRRYLFPVLGAIHVHNFFRWEPLKKDEKFEGFLKVQETVNFTKKGVEVTFPHLLLNSEGREVWRSTTTVLVPCRNKLYDRTNDTAAAGVAAAAPPTKRVGLVEEYQAQGLKPVLVREKTFKTKSDTGRRFAEVVQDYNPIHLFTVTARLFGFKRAICHGMYVGSLAMEEAMDVWRGEVGKGEGVMEADVKFIRPCFVGDAFRVKIFKVEDKKEETGKKLVVVVTQEGKEEICHLQATVRAAKK 375
            +++ +   PVL      +LLLIA VQ ST V+HFYPS+ EL +LYGKL+VSPLYK WRWKS+L++DM+L+P+L FKLPF AD  NVQ YV M GLQ K    +LPFAYVAS FLYPTVCLLSQRRYLFPVLG IHVHN+FRWEPLK  +K+EG LKVQETV FT+KG EVTFP +LLN +GREVWRSTTTVLVPCRN   D      +  + A A PTKR+ LV+E ++QGLK VLVRE+ FKT +DTGRRFA VV+DYNPIHLFT +ARLFGF+RAICHGMYVG+LA+EEA+D WR E G+   VMEADVKFIRPCFVG+ F VKI++VEDK  E GK+LVV+V Q+GKE+  H+QATV+AA++
Sbjct:    6 LLESLRVSPVLALALFVLLLLIASVQLSTRVTHFYPSTLELCSLYGKLLVSPLYKTWRWKSKLRRDMRLDPNLAFKLPFAADPMNVQQYVQMCGLQGKVEAEDLPFAYVASSFLYPTVCLLSQRRYLFPVLGGIHVHNYFRWEPLKMQQKYEGLLKVQETVKFTRKGAEVTFPQVLLNEQGREVWRSTTTVLVPCRNPPQD-----PSTSIGAEAVPTKRMSLVDECRSQGLKVVLVRERAFKTAADTGRRFAAVVKDYNPIHLFTWSARLFGFRRAICHGMYVGALALEEALDAWRAEGGEATTVMEADVKFIRPCFVGNGFVVKIWRVEDKAAEAGKRLVVMVAQQGKEDTVHMQATVQAARE 365
The following BLAST results are available for this feature:
BLAST of NO08G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26699.11.600e-13667.12hypothetical protein Naga_100001g118 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02130NO08G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02130.1NO08G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02130.1.cds1NO08G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02130.1 ID=NO08G02130.1|Name=NO08G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
ATGAAGCCTTCCGCTGCCCTCGACCCCATCATGGACCTCGTCTCGACTTT
CCCTGTGCTGACGGCCGTCTGTGCCACTATGCTTTTACTGATAGCCATTG
TGCAATCCTCCACGACTGTCTCTCACTTTTATCCGTCCTCCTTTGAACTC
TCCACCCTGTATGGCAAACTCATTGTCTCGCCCCTTTATAAAAACTGGCG
GTGGAAAAGTCAACTCAAGAAGGACATGAAGCTGAACCCGCACCTTGAAT
TCAAGCTTCCTTTCGAGGCAGATACGGCCAATGTGCAAGCCTACGTTGAC
ATGCTTGGTTTGCAAGAAAAGGCGGCGCCAACAGAACTGCCTTTCGCTTA
CGTTGCTTCGTGCTTTTTGTACCCGACTGTATGTCTTTTGAGTCAACGCC
GGTACCTGTTCCCCGTCCTCGGGGCCATCCACGTCCACAATTTTTTTAGA
TGGGAGCCTCTGAAAAAGGATGAAAAATTCGAAGGCTTTCTCAAGGTACA
AGAAACGGTGAATTTTACCAAGAAAGGCGTAGAGGTGACTTTTCCCCATC
TCCTGCTCAACTCCGAGGGAAGGGAGGTCTGGCGATCGACAACGACGGTG
TTGGTGCCTTGTCGCAACAAGCTTTATGACCGTACGAATGATACCGCAGC
AGCAGGGGTAGCAGCAGCAGCACCGCCGACGAAACGTGTGGGCTTGGTGG
AGGAGTATCAAGCACAGGGCCTCAAGCCTGTGTTGGTGCGCGAGAAGACG
TTTAAAACGAAGAGCGATACGGGGAGGCGATTTGCGGAAGTGGTGCAGGA
TTACAATCCCATTCATTTGTTCACTGTGACAGCTCGGTTGTTTGGATTTA
AGAGGGCGATTTGCCATGGGATGTACGTGGGGTCGTTGGCAATGGAGGAG
GCGATGGATGTGTGGAGAGGAGAGGTAGGAAAGGGGGAAGGAGTGATGGA
GGCTGATGTAAAATTCATCCGGCCCTGTTTTGTCGGGGATGCTTTCCGGG
TGAAAATTTTTAAAGTGGAAGATAAGAAAGAAGAAACGGGGAAGAAGCTG
GTGGTGGTCGTGACACAGGAGGGAAAAGAGGAGATATGTCACTTGCAGGC
CACTGTGAGGGCGGCAAAGAAAAGTTGA
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protein sequence of NO08G02130.1

>NO08G02130.1-protein ID=NO08G02130.1-protein|Name=NO08G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MKPSAALDPIMDLVSTFPVLTAVCATMLLLIAIVQSSTTVSHFYPSSFEL
STLYGKLIVSPLYKNWRWKSQLKKDMKLNPHLEFKLPFEADTANVQAYVD
MLGLQEKAAPTELPFAYVASCFLYPTVCLLSQRRYLFPVLGAIHVHNFFR
WEPLKKDEKFEGFLKVQETVNFTKKGVEVTFPHLLLNSEGREVWRSTTTV
LVPCRNKLYDRTNDTAAAGVAAAAPPTKRVGLVEEYQAQGLKPVLVREKT
FKTKSDTGRRFAEVVQDYNPIHLFTVTARLFGFKRAICHGMYVGSLAMEE
AMDVWRGEVGKGEGVMEADVKFIRPCFVGDAFRVKIFKVEDKKEETGKKL
VVVVTQEGKEEICHLQATVRAAKKS*
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mRNA from alignment at chr8:627775..628902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02130.1 ID=NO08G02130.1|Name=NO08G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp|location=Sequence derived from alignment at chr8:627775..628902- (Nannochloropsis oceanica)
ATGAAGCCTTCCGCTGCCCTCGACCCCATCATGGACCTCGTCTCGACTTT
CCCTGTGCTGACGGCCGTCTGTGCCACTATGCTTTTACTGATAGCCATTG
TGCAATCCTCCACGACTGTCTCTCACTTTTATCCGTCCTCCTTTGAACTC
TCCACCCTGTATGGCAAACTCATTGTCTCGCCCCTTTATAAAAACTGGCG
GTGGAAAAGTCAACTCAAGAAGGACATGAAGCTGAACCCGCACCTTGAAT
TCAAGCTTCCTTTCGAGGCAGATACGGCCAATGTGCAAGCCTACGTTGAC
ATGCTTGGTTTGCAAGAAAAGGCGGCGCCAACAGAACTGCCTTTCGCTTA
CGTTGCTTCGTGCTTTTTGTACCCGACTGTATGTCTTTTGAGTCAACGCC
GGTACCTGTTCCCCGTCCTCGGGGCCATCCACGTCCACAATTTTTTTAGA
TGGGAGCCTCTGAAAAAGGATGAAAAATTCGAAGGCTTTCTCAAGGTACA
AGAAACGGTGAATTTTACCAAGAAAGGCGTAGAGGTGACTTTTCCCCATC
TCCTGCTCAACTCCGAGGGAAGGGAGGTCTGGCGATCGACAACGACGGTG
TTGGTGCCTTGTCGCAACAAGCTTTATGACCGTACGAATGATACCGCAGC
AGCAGGGGTAGCAGCAGCAGCACCGCCGACGAAACGTGTGGGCTTGGTGG
AGGAGTATCAAGCACAGGGCCTCAAGCCTGTGTTGGTGCGCGAGAAGACG
TTTAAAACGAAGAGCGATACGGGGAGGCGATTTGCGGAAGTGGTGCAGGA
TTACAATCCCATTCATTTGTTCACTGTGACAGCTCGGTTGTTTGGATTTA
AGAGGGCGATTTGCCATGGGATGTACGTGGGGTCGTTGGCAATGGAGGAG
GCGATGGATGTGTGGAGAGGAGAGGTAGGAAAGGGGGAAGGAGTGATGGA
GGCTGATGTAAAATTCATCCGGCCCTGTTTTGTCGGGGATGCTTTCCGGG
TGAAAATTTTTAAAGTGGAAGATAAGAAAGAAGAAACGGGGAAGAAGCTG
GTGGTGGTCGTGACACAGGAGGGAAAAGAGGAGATATGTCACTTGCAGGC
CACTGTGAGGGCGGCAAAGAAAAGTTGA
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Coding sequence (CDS) from alignment at chr8:627775..628902-

>NO08G02130.1 ID=NO08G02130.1|Name=NO08G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr8:627775..628902- (Nannochloropsis oceanica)
ATGAAGCCTTCCGCTGCCCTCGACCCCATCATGGACCTCGTCTCGACTTT
CCCTGTGCTGACGGCCGTCTGTGCCACTATGCTTTTACTGATAGCCATTG
TGCAATCCTCCACGACTGTCTCTCACTTTTATCCGTCCTCCTTTGAACTC
TCCACCCTGTATGGCAAACTCATTGTCTCGCCCCTTTATAAAAACTGGCG
GTGGAAAAGTCAACTCAAGAAGGACATGAAGCTGAACCCGCACCTTGAAT
TCAAGCTTCCTTTCGAGGCAGATACGGCCAATGTGCAAGCCTACGTTGAC
ATGCTTGGTTTGCAAGAAAAGGCGGCGCCAACAGAACTGCCTTTCGCTTA
CGTTGCTTCGTGCTTTTTGTACCCGACTGTATGTCTTTTGAGTCAACGCC
GGTACCTGTTCCCCGTCCTCGGGGCCATCCACGTCCACAATTTTTTTAGA
TGGGAGCCTCTGAAAAAGGATGAAAAATTCGAAGGCTTTCTCAAGGTACA
AGAAACGGTGAATTTTACCAAGAAAGGCGTAGAGGTGACTTTTCCCCATC
TCCTGCTCAACTCCGAGGGAAGGGAGGTCTGGCGATCGACAACGACGGTG
TTGGTGCCTTGTCGCAACAAGCTTTATGACCGTACGAATGATACCGCAGC
AGCAGGGGTAGCAGCAGCAGCACCGCCGACGAAACGTGTGGGCTTGGTGG
AGGAGTATCAAGCACAGGGCCTCAAGCCTGTGTTGGTGCGCGAGAAGACG
TTTAAAACGAAGAGCGATACGGGGAGGCGATTTGCGGAAGTGGTGCAGGA
TTACAATCCCATTCATTTGTTCACTGTGACAGCTCGGTTGTTTGGATTTA
AGAGGGCGATTTGCCATGGGATGTACGTGGGGTCGTTGGCAATGGAGGAG
GCGATGGATGTGTGGAGAGGAGAGGTAGGAAAGGGGGAAGGAGTGATGGA
GGCTGATGTAAAATTCATCCGGCCCTGTTTTGTCGGGGATGCTTTCCGGG
TGAAAATTTTTAAAGTGGAAGATAAGAAAGAAGAAACGGGGAAGAAGCTG
GTGGTGGTCGTGACACAGGAGGGAAAAGAGGAGATATGTCACTTGCAGGC
CACTGTGAGGGCGGCAAAGAAAAGTTGA
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Synonyms
Publications