NO08G02020.1, NO08G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02020.1
Unique NameNO08G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1930
Alignment locationchr8:600476..602588 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:600476..602588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02020.1 vs.
Match: XP_005856012.1 (dyslexia susceptibility 1 candidate 1, partial [Nannochloropsis gaditana CCMP526]; EKU20349.1 dyslexia susceptibility 1 candidate 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.2 bits (430), Expect = 1.300e-38
Identity = 101/218 (46.33%), Postives = 132/218 (60.55%), Query Frame = 0 
Query:  158 EERHAFFSSEVVAMASTSKASSTSSFPAKA-----VIPGVRNATEGPTTVNVAFTPRLFSTPMRESKKEEEESWVDRHKPEWREH-HQ--EGRNQIEQAGEPDSYDIRTVSERDPMWLKARGDKSYSIGDFESARNAYTAALQSQVRFSSRHLVLGNRALSFFQIGQYQECVEDCTEALAILLVDGNHDNREHIRSFLRLHVRRAAAFCELGEYTKSL 368
            EE+  FF+ ++       +  ST S P        V P VR+ + G   +NV FTPR+F TP+RESKK +E+ W+ + KP W E+ HQ  E RN  E   EP   D+R+VSERDP WLKARGD     GD+ESA NAYT AL    R    HL+LGNRAL FF+I +YQEC +DCTEAL +L      D+   +  +L+L+ RR A FC++G Y  +L
Sbjct:    7 EEKQIFFALDIGI--DPHETLSTLSIPTSKSLSVPVAPAVRSES-GRKVINVTFTPRMFPTPLRESKKLDEDLWIKKFKPAWNENVHQKLEARNHNE---EPKYDDMRSVSERDPFWLKARGDNMCRAGDYESAINAYTTALCCDSRHRQHHLLLGNRALCFFRIRRYQECADDCTEALKLLQSSERQDSDTSVGIYLQLYARRGACFCQMGNYAIAL 218
The following BLAST results are available for this feature:
BLAST of NO08G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856012.11.300e-3846.33dyslexia susceptibility 1 candidate 1, partial [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02020NO08G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02020.1NO08G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02020.1.cds1NO08G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02020.1.cds2NO08G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02020.1.cds3NO08G02020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02020.1 ID=NO08G02020.1|Name=NO08G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp
CTACAATAACAATAATAATACTACCACTAATACTACTACTACTACGCTAC
GCTACTACGTACTACGGCTACGGCTACGGCTACGGCTACGGCAACAGTCG
ACTACCGCTCGCATACCGCTCGCAGATTTTTCTTGGGATTCAATGGCACG
TCGCCGGCTGTAGACTTTGTTCCAACATGGGGTAAAGGTAAACGACAAAT
GGCCGCCCAGTATGTCTACAAATTAAAAAAAAAATGGTAGGCAGGTTAGC
CGAGGGCTCGAGGGCTGTGCATAGCCTCAGTAATTTGAGATGAAAATTAT
CAAAAGAAGTTACACTACTTATCCAGATTAAGGTGGGTGTACTTCCTTCG
TCGTCCTTGCAAGGCCTTGACCTTAAGAGTGCTGGCGTGTGGCTAAAAAT
AACAAGGCAAGTCAATTGAGTACAAGTTTTACGTTCCTCGGCCCAACGGA
ATCACGATGATAGCCCATGCCCATTTCGCTGCTCCTCAGCCGTCCTCAAA
TTTCACCTAGATGATGGATGCAGCTCTACTGCTATCGTTTTGTTCTCTAA
ATCCGCATTTGGTCGACCTTGAAAGCTAGTTCCCCTTTTTCTTCGTCACG
CTCCCTAAAATCATCCTCCGTCTTCCTCTCTACCCCACCCACCCCCCCAC
GTAGCATCATGTCGCCCCTCGTACCTACATACACCTGGCAACAAGACGAA
CACAAAATTGATGTCAGGATTCCACTGAAGAACATTAAGGCCTCGGACAT
CGATATTTACGTGGCCCGCACTTACATCAAGATTAATTTTGGCAAATATT
TGTTGGAGCTGGATATGCTTCACAGCATCGAAGATGAAACTGTCGAGGCG
CTCGCGAAAGGAGACGGGACTTTGGTGCTCAAAATACGCAAAGACGAGGC
TGACATCGCCAGTCGAGGCATCTGGCCCACCTTGACCATTCCTTGTGAAA
CGTGCGACACAAAAATGCTCCGAATGCGACGGGCTGAAGCAGTGGAGGAA
CGGCGGGCCAAGGAACAGCACCTCCGCGAGGTCGCCAAAGAAAAGAAGCA
GGACTTGGAACGGCTGGTCCTCCAGTCCCGCATAGACACTGAAATGGCGC
AACAAGCATGCCAAGGAAAGCGACAGGCTGAAGAACGACACGCTTTCTTT
TCGTCGGAAGTTGTGGCTATGGCTTCGACGTCAAAAGCGTCGTCAACTTC
CTCCTTCCCAGCAAAAGCTGTGATTCCCGGCGTGCGTAATGCCACTGAGG
GGCCCACCACGGTAAACGTAGCATTTACCCCACGATTGTTTTCCACACCT
ATGCGAGAATCCAAAAAGGAGGAAGAAGAATCCTGGGTCGATCGCCATAA
ACCAGAATGGCGCGAGCACCACCAGGAGGGCCGAAATCAAATTGAACAGG
CGGGCGAGCCCGATTCGTATGACATCCGAACCGTGAGCGAGAGGGACCCC
ATGTGGCTCAAGGCTCGGGGAGACAAGAGCTACTCTATCGGTGACTTTGA
ATCAGCCAGAAACGCCTATACTGCAGCCTTGCAAAGCCAAGTCCGATTTA
GCTCACGCCATTTGGTCCTCGGAAACCGTGCTTTGTCTTTTTTCCAAATT
GGACAGTACCAGGAGTGTGTCGAAGACTGCACCGAAGCTCTGGCGATCTT
GCTCGTCGACGGGAACCATGACAACAGGGAGCACATCAGAAGCTTTCTAC
GCCTGCATGTTCGTCGTGCTGCAGCCTTCTGTGAGCTAGGAGAATATACG
AAGTCATTGAACGATTACAGGATGGCGCTCTACTATGCTCCAGGGGACAA
AAGCTTGGAGAAGGATATCAGGATCCTGGAGAAGCGACTCGAACTGGCGA
GCGATACAAATAGGCGGATTGGCATTTGAGAGTAAAATGAGCGTGTGCAG
AACGAAAAGGAAAGTAAAACGTATGATCTA
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protein sequence of NO08G02020.1

>NO08G02020.1-protein ID=NO08G02020.1-protein|Name=NO08G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSPLVPTYTWQQDEHKIDVRIPLKNIKASDIDIYVARTYIKINFGKYLLE
LDMLHSIEDETVEALAKGDGTLVLKIRKDEADIASRGIWPTLTIPCETCD
TKMLRMRRAEAVEERRAKEQHLREVAKEKKQDLERLVLQSRIDTEMAQQA
CQGKRQAEERHAFFSSEVVAMASTSKASSTSSFPAKAVIPGVRNATEGPT
TVNVAFTPRLFSTPMRESKKEEEESWVDRHKPEWREHHQEGRNQIEQAGE
PDSYDIRTVSERDPMWLKARGDKSYSIGDFESARNAYTAALQSQVRFSSR
HLVLGNRALSFFQIGQYQECVEDCTEALAILLVDGNHDNREHIRSFLRLH
VRRAAAFCELGEYTKSLNDYRMALYYAPGDKSLEKDIRILEKRLELASDT
NRRIGI*
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mRNA from alignment at chr8:600476..602588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02020.1 ID=NO08G02020.1|Name=NO08G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp|location=Sequence derived from alignment at chr8:600476..602588+ (Nannochloropsis oceanica)
CTACAATAACAATAATAATACTACCACTAATACTACTACTACTACGCTAC
GCTACTACGTACTACGGCTACGGCTACGGCTACGGCTACGGCAACAGTCG
ACTACCGCTCGCATACCGCTCGCAGATTTTTCTTGGGATTCAATGGCACG
TCGCCGGCTGTAGACTTTGTTCCAACATGGGGTAAAGGTAAACGACAAAT
GGCCGCCCAGTATGTCTACAAATTAAAAAAAAAATGGTAGGCAGGTTAGC
CGAGGGCTCGAGGGCTGTGCATAGCCTCAGTAATTTGAGATGAAAATTAT
CAAAAGAAGTTACACTACTTATCCAGATTAAGGTGGGTGTACTTCCTTCG
TCGTCCTTGCAAGGCCTTGACCTTAAGAGTGCTGGCGTGTGGCTAAAAAT
AACAAGGCAAGTCAATTGAGTACAAGTTTTACGTTCCTCGGCCCAACGGA
ATCACGATGATAGCCCATGCCCATTTCGCTGCTCCTCAGCCGTCCTCAAA
TTTCACCTAGATGATGGATGCAGCTCTACTGCTATCGTTTTGTTCTCTAA
ATCCGCATTTGGTCGACCTTGAAAGCTAGTTCCCCTTTTTCTTCGTCACG
CTCCCTAAAATCATCCTCCGTCTTCCTCTCTACCCCACCCACCCCCCCAC
GTAGCATCATGTCGCCCCTCGTACCTACATACACCTGGCAACAAGACGAA
CACAAAATTGATGTCAGGATTCCACTGAAGAACATTAAGGCCTCGGACAT
CGATATTTACGGTAAGTCTGCCTGCTGCTTTGGGATTTCAGATGTCCCTC
CTTTGTTTTTCTAATCCCACATCCTTTCCCCACTCTTTGACGATCCAACC
TTCTCTTTTTCCTTAGTGGCCCGCACTTACATCAAGATTAATTTTGGCAA
ATATTTGTTGGAGCTGGATATGCTTCACAGCATCGAAGATGAAACTGTCG
AGGCGCTCGCGAAAGGAGACGGGACTTTGGTGCTCAAAATACGCAAAGAC
GAGGCTGACATCGCCAGTCGAGGCATCTGGCCCACCTTGACCATTCCTTG
TGAAACGTGCGACACAAAAATGCTCCGAATGCGACGGGCTGAAGCAGTGG
AGGAACGGCGGGCCAAGGAACAGCACCTCCGCGAGGTCGCCAAAGAAAAG
AAGCAGGACTTGGAACGGCTGGTCCTCCAGTCCCGCATAGACACTGAAAT
GGCGCAACAAGCATGCCAAGGAAAGCGACAGGCTGAAGAACGACACGCTT
TCTTTTCGTCGGAAGTTGTGGCTATGGCTTCGACGTCAAAAGCGTCGTCA
ACTTCCTCCTTCCCAGCAAAAGCTGTGATTCCCGGCGTGCGTAATGCCAC
TGAGGGGCCCACCACGGTAAACGTAGCATTTACCCCACGATTGTTTTCCA
CACCTATGCGAGAATCCAAAAAGGAGGAAGAAGAATCCTGGGTCGATCGC
CATAAACCAGAATGGCGCGAGCACCACCAGGAGGGCCGAAATCAAATTGA
ACAGGCGGGCGAGCCCGATTCGTATGACATCCGAACCGTGAGCGAGAGGG
ACCCCATGTGGCTCAAGGCTCGGGGAGACAAGAGCTACTCTATCGGTGAC
TTTGAATCAGCCAGAAACGCCTATACTGCAGCCTTGCAAAGCCAAGTCCG
ATTTAGCTCACGCCATTTGGTCCTCGGAAACCGTGCTTTGTCTTTTTTCC
AAATTGGACAGTACCAGGAGTGTGTCGAAGACTGCACCGAAGCTCTGGCG
ATCTTGCTCGTCGACGGGAACCATGACAACAGGGAGCACATCAGAAGCTT
TCTACGCCTGCATGTTCGTCGTGCTGCAGCCTTCTGTGAGCTAGGAGAAT
ATACGAAGTCATTGAACGATTACAGGTAAAACTTGAAAGTAGAGAATTTG
CTCCATGATGCGACCATTGAGCTTACCTGGTCTCTTCCCCAAATACACTG
CAGGATGGCGCTCTACTATGCTCCAGGGGACAAAAGCTTGGAGAAGGATA
TCAGGATCCTGGAGAAGCGACTCGAACTGGCGAGCGATACAAATAGGCGG
ATTGGCATTTGAGAGTAAAATGAGCGTGTGCAGAACGAAAAGGAAAGTAA
AACGTATGATCTA
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Coding sequence (CDS) from alignment at chr8:600476..602588+

>NO08G02020.1 ID=NO08G02020.1|Name=NO08G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr8:600476..602588+ (Nannochloropsis oceanica)
ATGTCGCCCCTCGTACCTACATACACCTGGCAACAAGACGAACACAAAAT
TGATGTCAGGATTCCACTGAAGAACATTAAGGCCTCGGACATCGATATTT
ACGTGGCCCGCACTTACATCAAGATTAATTTTGGCAAATATTTGTTGGAG
CTGGATATGCTTCACAGCATCGAAGATGAAACTGTCGAGGCGCTCGCGAA
AGGAGACGGGACTTTGGTGCTCAAAATACGCAAAGACGAGGCTGACATCG
CCAGTCGAGGCATCTGGCCCACCTTGACCATTCCTTGTGAAACGTGCGAC
ACAAAAATGCTCCGAATGCGACGGGCTGAAGCAGTGGAGGAACGGCGGGC
CAAGGAACAGCACCTCCGCGAGGTCGCCAAAGAAAAGAAGCAGGACTTGG
AACGGCTGGTCCTCCAGTCCCGCATAGACACTGAAATGGCGCAACAAGCA
TGCCAAGGAAAGCGACAGGCTGAAGAACGACACGCTTTCTTTTCGTCGGA
AGTTGTGGCTATGGCTTCGACGTCAAAAGCGTCGTCAACTTCCTCCTTCC
CAGCAAAAGCTGTGATTCCCGGCGTGCGTAATGCCACTGAGGGGCCCACC
ACGGTAAACGTAGCATTTACCCCACGATTGTTTTCCACACCTATGCGAGA
ATCCAAAAAGGAGGAAGAAGAATCCTGGGTCGATCGCCATAAACCAGAAT
GGCGCGAGCACCACCAGGAGGGCCGAAATCAAATTGAACAGGCGGGCGAG
CCCGATTCGTATGACATCCGAACCGTGAGCGAGAGGGACCCCATGTGGCT
CAAGGCTCGGGGAGACAAGAGCTACTCTATCGGTGACTTTGAATCAGCCA
GAAACGCCTATACTGCAGCCTTGCAAAGCCAAGTCCGATTTAGCTCACGC
CATTTGGTCCTCGGAAACCGTGCTTTGTCTTTTTTCCAAATTGGACAGTA
CCAGGAGTGTGTCGAAGACTGCACCGAAGCTCTGGCGATCTTGCTCGTCG
ACGGGAACCATGACAACAGGGAGCACATCAGAAGCTTTCTACGCCTGCAT
GTTCGTCGTGCTGCAGCCTTCTGTGAGCTAGGAGAATATACGAAGTCATT
GAACGATTACAGGATGGCGCTCTACTATGCTCCAGGGGACAAAAGCTTGG
AGAAGGATATCAGGATCCTGGAGAAGCGACTCGAACTGGCGAGCGATACA
AATAGGCGGATTGGCATTTGA
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Synonyms
Publications