NO08G01920.1, NO08G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01920.1
Unique NameNO08G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr8:582266..583788 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:582266..583788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01920.1 vs.
Match: EWM26743.1 (hypothetical protein Naga_100001g99 [Nannochloropsis gaditana])

HSP 1 Score: 460.7 bits (1184), Expect = 4.500e-126
Identity = 265/378 (70.11%), Postives = 304/378 (80.42%), Query Frame = 0 
Query:    7 LLSAAAVMC--LLPASTAFLVPSAELSRRSALGGRRGDLGARGTFSSGEFDKGGLFASSDGFPSLGDGFPSIGSSGSSSSSSSSGTGFPSIG-VSSLSTPRRGVLIQNMPADSNIKIRILDREHKLGITGVVETIAVVKDTRFALCRTKDRAAAILDEFVFPVDVDSQSMSALLRRANRILKKDGVELLWTASTLTVRGLERPQTEYLSWKQPFNVQQQQGLSHLEARLQEAIRQGQNGGMPGGVEEEDGSGGMEGVLVEAEAAEAAAILEAEEEAAASMDRLDAAFFADVNDEDYATDAAEGLDKRSPLMESEMLCDFEFQGSKYRVVVYQEPVSVLGQWMPDGTWRLLKSVEAELVEDALAFKGLQNVDVELLGSD 382
            LLSA A  C  LLP + AFL P+A++SRR AL G R +LGARGTFS GEFDKGGLFASS GFPS+GDGFP +GSSGS+S ++++  GFPS+G +SSLS+PRRGVLIQNMPADSN KIRILDREHKLGITG+VETIAVVKD RFALCR KDRAAAILDEFVFPVDVDSQ M+AL+R+ANR L K+G+EL WTA TLTVRGL+RP T Y+S K+PFNVQ ++  S   AR           G     E+++G+   EG L EAEA    A L + EE AA MDRLDAAFFADV DEDYA DAAEGLDKR+PL+E EMLC FE+Q SKYRVVVY+EPV VL QWM DGTWRLLKSVEAELVEDA+A+KGLQNVDVEL+GS+
Sbjct:   16 LLSALAFTCMALLPTTAAFLAPTAQVSRRRALTGLRLNLGARGTFS-GEFDKGGLFASSSGFPSIGDGFPGMGSSGSTSPTATAD-GFPSLGEISSLSSPRRGVLIQNMPADSNFKIRILDREHKLGITGIVETIAVVKDARFALCRVKDRAAAILDEFVFPVDVDSQPMAALIRKANRQLAKEGLELKWTAHTLTVRGLKRPDTGYMSRKEPFNVQARRLHSSWGAR----------DGRVAVEEDDEGANAQEGGLAEAEAT---ATLASAEEMAAGMDRLDAAFFADVKDEDYAGDAAEGLDKRTPLLEPEMLCQFEWQRSKYRVVVYREPVPVLAQWMEDGTWRLLKSVEAELVEDAMAYKGLQNVDVELVGSE 378
The following BLAST results are available for this feature:
BLAST of NO08G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26743.14.500e-12670.11hypothetical protein Naga_100001g99 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01920NO08G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01920.1NO08G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01920.1.cds1NO08G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01920.1.cds2NO08G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01920.1.cds3NO08G01920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01920.1 ID=NO08G01920.1|Name=NO08G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
ATGATGCGGATGCCTGTGTTGCTAAGCGCGGCGGCCGTGATGTGCCTCCT
ACCCGCCAGCACTGCATTTCTGGTTCCTTCTGCAGAGCTGTCTCGTCGGA
GCGCCCTTGGCGGCCGACGAGGAGACTTGGGTGCCCGAGGCACATTTTCT
AGCGGTGAGTTCGACAAGGGCGGTCTCTTCGCCAGCAGCGACGGGTTTCC
GTCTTTAGGTGACGGCTTCCCCAGCATTGGCTCTTCAGGCTCGTCTTCAT
CCTCGTCCTCGTCCGGGACTGGCTTTCCTAGCATCGGTGTCTCTTCTCTG
AGCACGCCCCGACGGGGCGTGCTCATTCAGAACATGCCCGCGGACTCCAA
TATCAAAATTCGCATTTTGGACAGGGAGCACAAGTTGGGTATCACGGGGG
TAGTTGAGACGATCGCCGTGGTGAAAGACACGCGATTTGCCCTGTGCCGG
ACCAAAGACCGGGCGGCTGCCATTCTGGATGAATTCGTCTTTCCTGTCGA
CGTGGACTCCCAGTCCATGTCCGCGCTCCTTCGTCGTGCTAACCGCATCT
TGAAAAAGGATGGTGTGGAGCTGCTCTGGACTGCGAGTACCTTGACGGTT
CGGGGCCTGGAGCGACCGCAGACGGAGTACCTGTCTTGGAAGCAGCCGTT
CAACGTGCAGCAGCAGCAGGGATTGTCCCACCTCGAGGCACGTCTGCAGG
AGGCCATTAGACAGGGACAGAATGGAGGGATGCCGGGAGGAGTCGAAGAG
GAGGATGGAAGTGGTGGTATGGAAGGGGTCCTGGTAGAGGCGGAGGCTGC
GGAGGCTGCGGCTATTCTGGAGGCAGAGGAGGAGGCAGCAGCGAGCATGG
ACCGACTGGATGCTGCGTTCTTTGCAGACGTGAATGACGAGGATTATGCG
ACTGACGCCGCGGAAGGGCTTGATAAGCGGAGCCCATTGATGGAGTCGGA
AATGTTATGTGACTTCGAGTTTCAGGGGTCGAAGTACCGGGTGGTGGTAT
ACCAGGAGCCTGTGTCGGTTTTGGGACAGTGGATGCCGGATGGCACATGG
CGATTATTGAAGAGCGTGGAGGCGGAGTTGGTGGAGGACGCGTTGGCTTT
TAAGGGACTACAGAATGTGGATGTCGAGCTTCTGGGGTCGGACTGA
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protein sequence of NO08G01920.1

>NO08G01920.1-protein ID=NO08G01920.1-protein|Name=NO08G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MMRMPVLLSAAAVMCLLPASTAFLVPSAELSRRSALGGRRGDLGARGTFS
SGEFDKGGLFASSDGFPSLGDGFPSIGSSGSSSSSSSSGTGFPSIGVSSL
STPRRGVLIQNMPADSNIKIRILDREHKLGITGVVETIAVVKDTRFALCR
TKDRAAAILDEFVFPVDVDSQSMSALLRRANRILKKDGVELLWTASTLTV
RGLERPQTEYLSWKQPFNVQQQQGLSHLEARLQEAIRQGQNGGMPGGVEE
EDGSGGMEGVLVEAEAAEAAAILEAEEEAAASMDRLDAAFFADVNDEDYA
TDAAEGLDKRSPLMESEMLCDFEFQGSKYRVVVYQEPVSVLGQWMPDGTW
RLLKSVEAELVEDALAFKGLQNVDVELLGSD*
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mRNA from alignment at chr8:582266..583788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01920.1 ID=NO08G01920.1|Name=NO08G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp|location=Sequence derived from alignment at chr8:582266..583788- (Nannochloropsis oceanica)
ATGATGCGGATGCCTGTGTTGCTAAGCGCGGCGGCCGTGATGTGCCTCCT
ACCCGCCAGCACTGCATTTCTGGTTCCTTCTGCAGAGCTGTCTCGTCGGA
GCGCCCTTGGCGGTACGTTTTGGTTGAGCCAGTGAAGCGTAGAACAAAAT
GCAGTCGAAGTTACTTGTGTCAGCAGACATGCCTGTCTTTGCGTTACCAA
ACCTTATCTGACGTCTGTTGCCCCTTCCCTCCCGTTCCTCGTACAGGCCG
ACGAGGAGACTTGGGTGCCCGAGGGTATGTTTGTCGTAGGGATATTGGAT
CGTGGGTATGGGGGTTTTCTGTCTTCCGACGAAGCAAGGCGGGAAAGTGG
GAGGAAGGCGGGGAAAACAGCATTACCTTGCAGCTCATGTGCATTTGGGA
CAGAAGACGAGAGATTCGTACAAATTCCCCTGGTCGATGAACCCATATAG
AAGTATCTGACACCAGCATTATCCCCTTCTTTCCCCCTCCGATCTCTCTT
ATTTACGACCACAACAGCACATTTTCTAGCGGTGAGTTCGACAAGGGCGG
TCTCTTCGCCAGCAGCGACGGGTTTCCGTCTTTAGGTGACGGCTTCCCCA
GCATTGGCTCTTCAGGCTCGTCTTCATCCTCGTCCTCGTCCGGGACTGGC
TTTCCTAGCATCGGTGTCTCTTCTCTGAGCACGCCCCGACGGGGCGTGCT
CATTCAGAACATGCCCGCGGACTCCAATATCAAAATTCGCATTTTGGACA
GGGAGCACAAGTTGGGTATCACGGGGGTAGTTGAGACGATCGCCGTGGTG
AAAGACACGCGATTTGCCCTGTGCCGGACCAAAGACCGGGCGGCTGCCAT
TCTGGATGAATTCGTCTTTCCTGTCGACGTGGACTCCCAGTCCATGTCCG
CGCTCCTTCGTCGTGCTAACCGCATCTTGAAAAAGGATGGTGTGGAGCTG
CTCTGGACTGCGAGTACCTTGACGGTTCGGGGCCTGGAGCGACCGCAGAC
GGAGTACCTGTCTTGGAAGCAGCCGTTCAACGTGCAGCAGCAGCAGGGAT
TGTCCCACCTCGAGGCACGTCTGCAGGAGGCCATTAGACAGGGACAGAAT
GGAGGGATGCCGGGAGGAGTCGAAGAGGAGGATGGAAGTGGTGGTATGGA
AGGGGTCCTGGTAGAGGCGGAGGCTGCGGAGGCTGCGGCTATTCTGGAGG
CAGAGGAGGAGGCAGCAGCGAGCATGGACCGACTGGATGCTGCGTTCTTT
GCAGACGTGAATGACGAGGATTATGCGACTGACGCCGCGGAAGGGCTTGA
TAAGCGGAGCCCATTGATGGAGTCGGAAATGTTATGTGACTTCGAGTTTC
AGGGGTCGAAGTACCGGGTGGTGGTATACCAGGAGCCTGTGTCGGTTTTG
GGACAGTGGATGCCGGATGGCACATGGCGATTATTGAAGAGCGTGGAGGC
GGAGTTGGTGGAGGACGCGTTGGCTTTTAAGGGACTACAGAATGTGGATG
TCGAGCTTCTGGGGTCGGACTGA
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Coding sequence (CDS) from alignment at chr8:582266..583788-

>NO08G01920.1 ID=NO08G01920.1|Name=NO08G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr8:582266..583788- (Nannochloropsis oceanica)
ATGATGCGGATGCCTGTGTTGCTAAGCGCGGCGGCCGTGATGTGCCTCCT
ACCCGCCAGCACTGCATTTCTGGTTCCTTCTGCAGAGCTGTCTCGTCGGA
GCGCCCTTGGCGGCCGACGAGGAGACTTGGGTGCCCGAGGCACATTTTCT
AGCGGTGAGTTCGACAAGGGCGGTCTCTTCGCCAGCAGCGACGGGTTTCC
GTCTTTAGGTGACGGCTTCCCCAGCATTGGCTCTTCAGGCTCGTCTTCAT
CCTCGTCCTCGTCCGGGACTGGCTTTCCTAGCATCGGTGTCTCTTCTCTG
AGCACGCCCCGACGGGGCGTGCTCATTCAGAACATGCCCGCGGACTCCAA
TATCAAAATTCGCATTTTGGACAGGGAGCACAAGTTGGGTATCACGGGGG
TAGTTGAGACGATCGCCGTGGTGAAAGACACGCGATTTGCCCTGTGCCGG
ACCAAAGACCGGGCGGCTGCCATTCTGGATGAATTCGTCTTTCCTGTCGA
CGTGGACTCCCAGTCCATGTCCGCGCTCCTTCGTCGTGCTAACCGCATCT
TGAAAAAGGATGGTGTGGAGCTGCTCTGGACTGCGAGTACCTTGACGGTT
CGGGGCCTGGAGCGACCGCAGACGGAGTACCTGTCTTGGAAGCAGCCGTT
CAACGTGCAGCAGCAGCAGGGATTGTCCCACCTCGAGGCACGTCTGCAGG
AGGCCATTAGACAGGGACAGAATGGAGGGATGCCGGGAGGAGTCGAAGAG
GAGGATGGAAGTGGTGGTATGGAAGGGGTCCTGGTAGAGGCGGAGGCTGC
GGAGGCTGCGGCTATTCTGGAGGCAGAGGAGGAGGCAGCAGCGAGCATGG
ACCGACTGGATGCTGCGTTCTTTGCAGACGTGAATGACGAGGATTATGCG
ACTGACGCCGCGGAAGGGCTTGATAAGCGGAGCCCATTGATGGAGTCGGA
AATGTTATGTGACTTCGAGTTTCAGGGGTCGAAGTACCGGGTGGTGGTAT
ACCAGGAGCCTGTGTCGGTTTTGGGACAGTGGATGCCGGATGGCACATGG
CGATTATTGAAGAGCGTGGAGGCGGAGTTGGTGGAGGACGCGTTGGCTTT
TAAGGGACTACAGAATGTGGATGTCGAGCTTCTGGGGTCGGACTGA
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Synonyms
Publications