NO08G01850.1, NO08G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01850.1
Unique NameNO08G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1454
Alignment locationchr8:566627..568308 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:566627..568308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01850.1 vs.
Match: EWM26618.1 (arginine-trna-protein transferase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 9.700e-117
Identity = 221/319 (69.28%), Postives = 267/319 (83.70%), Query Frame = 0 
Query:   13 LLPALLVVLCLLYPPSGCACFRLGKHGGNASTITSTSGGAGSSPSSSPAKWKTPQWGKMFAEALGQTGNTNDGSHTSMECNAADELMRKRGPDNYRKALEEYKALLEKEPDNASLKLKLANASVSLLRSVTNANAVLIDGISDSEANRKLWKQYAFTAYDLLKDLHKSQPDNPQIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMKLVNQIVKSHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFQAACKIEPRSLRNNYFLGVSQFHAGAWKEAAEAFTRAVGGEVESVAATEKDVAEFLKRESRRSLDVTKGKI 332
            +L +L +VL LLYPPSGC CFRLGK   + ++I S   GA ++P+    +WK P+  K+ AEA+G  G+    S TS+EC+ AD+LM++RGPDNYRKA  EYK LLEK+P++ASLK K A+ASVSLLRS+TNANAVLIDG+SDS+ NRKLWK YAF AYD+LK+LH  +P N +IHVLMTEAYTYRTSSKGILKAAVTGDGLTFM+LV+QIV  HPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAF++A ++EPRSLRNN+FLGVS FHAG+++ A +AF RAVG +VESVAATE DVAEF +RESRRSL++TK +I
Sbjct:    8 VLASLFIVLLLLYPPSGCVCFRLGKRENDVASINSD--GASTAPAQVQ-QWKVPRLSKVVAEAMGHGGD----SATSVECHTADKLMQERGPDNYRKAAAEYKLLLEKQPNSASLKFKFADASVSLLRSLTNANAVLIDGVSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVGKDVESVAATEVDVAEFFRRESRRSLEMTKERI 319
The following BLAST results are available for this feature:
BLAST of NO08G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26618.19.700e-11769.28arginine-trna-protein transferase 1-like protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01850NO08G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01850.1NO08G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01850.1.cds1NO08G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01850.1.cds2NO08G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01850.1 ID=NO08G01850.1|Name=NO08G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
ACAGCCACAAAGATTAACAGCAATTTCGCAAGACCCATTCCTTCCGGCCG
TCACCATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCG
GCCCTCCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTG
CTTTCGTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTA
GCGGTGGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACG
CCACAATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACAC
GAACGATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGA
TGCGTAAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAG
GCGTTGCTGGAGAAAGAGCCTGACAACGCCTCCCTCAAACTCAAACTCGC
CAACGCCAGCGTTTCCCTCCTTCGGTCTGTTACTAACGCTAACGCCGTCC
TTATCGATGGCATCTCCGATAGTGAGGCCAATCGAAAATTGTGGAAACAA
TACGCGTTCACTGCCTACGACCTTCTCAAAGACCTGCACAAATCCCAACC
AGACAACCCCCAAATCCACGTCTTGATGACCGAGGCCTATACCTACCGTA
CCTCCAGCAAGGGCATCCTCAAGGCAGCAGTCACAGGAGACGGACTCACA
TTCATGAAGCTGGTCAATCAGATCGTGAAGAGTCATCCCACCTACGATGC
CGGGGTTCCATTTATCTTCCGCGGGGCCTTTCTACTGGCTGCGCCCTGGC
CCCTGCGAGACGTACCCAAGGCGGTCGAAGCCTTCCAAGCTGCGTGCAAA
ATAGAGCCGAGAAGCCTGCGGAATAATTACTTTCTGGGAGTTTCTCAGTT
TCATGCCGGCGCGTGGAAGGAGGCAGCGGAGGCCTTCACGCGTGCTGTGG
GAGGGGAAGTGGAATCGGTGGCAGCGACCGAGAAGGATGTAGCCGAGTTT
TTGAAAAGAGAGAGCAGGCGGTCATTGGACGTGACCAAAGGGAAGATTGC
GGCAACCAAGATGTAGGGAGGGGGTGGATGGCGGATTCTGGGGTTTGGGG
GGTGGATAAGCTTCATGTACCATAGAGCTTAGAGAAGGAAAGGAAGGGGC
ATGGCGGCGTTTGCAGCTTGCTGTATGCACGGGCCAGTATCACCCATACC
ATCCTCATCCTTGTGATTATGATAAAATTACGCATGCAATGGGTGGAAGG
TGGGCTTCTATAGAATATGATAGAAAAGCCGGCTTCAATAGAGGCAGAAA
GGGGGGAAGAGTGGGAGAGGGAGATGGTGAAAAGACTTATGACATCGCTG
TCGAGAGCATCAGCAACGCACTAGCCAGCAGAACCACACGACAAGAAAAG
ATATGACTTCAAAAGGAATGTAACAAATGAAGGAGAAGCTCTTTGCCCTC
CCCG
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protein sequence of NO08G01850.1

>NO08G01850.1-protein ID=NO08G01850.1-protein|Name=NO08G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MHASAATSPGSSLLPALLVVLCLLYPPSGCACFRLGKHGGNASTITSTSG
GAGSSPSSSPAKWKTPQWGKMFAEALGQTGNTNDGSHTSMECNAADELMR
KRGPDNYRKALEEYKALLEKEPDNASLKLKLANASVSLLRSVTNANAVLI
DGISDSEANRKLWKQYAFTAYDLLKDLHKSQPDNPQIHVLMTEAYTYRTS
SKGILKAAVTGDGLTFMKLVNQIVKSHPTYDAGVPFIFRGAFLLAAPWPL
RDVPKAVEAFQAACKIEPRSLRNNYFLGVSQFHAGAWKEAAEAFTRAVGG
EVESVAATEKDVAEFLKRESRRSLDVTKGKIAATKM*
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mRNA from alignment at chr8:566627..568308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01850.1 ID=NO08G01850.1|Name=NO08G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp|location=Sequence derived from alignment at chr8:566627..568308+ (Nannochloropsis oceanica)
ACAGCCACAAAGATTAACAGCAATTTCGCAAGACCCATTCCTTCCGGCCG
TCACCATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCG
GCCCTCCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTG
CTTTCGTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTA
GCGGTGGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACG
CCACAATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACAC
GAACGATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGA
TGCGTAAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAG
GCGTTGCTGGAGAAAGAGCCTGACAAGTGCGTGTAGCGGAGGGAACAGGG
TGGTGAGGCGCGTAGGGTGGTGGGGAGGTTTGAGTAGTCTCTACCCTTCC
GCTCACGCAATAGCTGCTCTAAAGGCTGGCATGTTGAGTTATCCACTGAT
TCATAGAATTTATGACACAAACCACCTCCGCCACGCTAAATTATCTTCTC
ATCCCTCTCTTCCTCCCTTTCTTCGTCCCTCCCCCCTCCCCCATCACAAC
ACAGCGCCTCCCTCAAACTCAAACTCGCCAACGCCAGCGTTTCCCTCCTT
CGGTCTGTTACTAACGCTAACGCCGTCCTTATCGATGGCATCTCCGATAG
TGAGGCCAATCGAAAATTGTGGAAACAATACGCGTTCACTGCCTACGACC
TTCTCAAAGACCTGCACAAATCCCAACCAGACAACCCCCAAATCCACGTC
TTGATGACCGAGGCCTATACCTACCGTACCTCCAGCAAGGGCATCCTCAA
GGCAGCAGTCACAGGAGACGGACTCACATTCATGAAGCTGGTCAATCAGA
TCGTGAAGAGTCATCCCACCTACGATGCCGGGGTTCCATTTATCTTCCGC
GGGGCCTTTCTACTGGCTGCGCCCTGGCCCCTGCGAGACGTACCCAAGGC
GGTCGAAGCCTTCCAAGCTGCGTGCAAAATAGAGCCGAGAAGCCTGCGGA
ATAATTACTTTCTGGGAGTTTCTCAGTTTCATGCCGGCGCGTGGAAGGAG
GCAGCGGAGGCCTTCACGCGTGCTGTGGGAGGGGAAGTGGAATCGGTGGC
AGCGACCGAGAAGGATGTAGCCGAGTTTTTGAAAAGAGAGAGCAGGCGGT
CATTGGACGTGACCAAAGGGAAGATTGCGGCAACCAAGATGTAGGGAGGG
GGTGGATGGCGGATTCTGGGGTTTGGGGGGTGGATAAGCTTCATGTACCA
TAGAGCTTAGAGAAGGAAAGGAAGGGGCATGGCGGCGTTTGCAGCTTGCT
GTATGCACGGGCCAGTATCACCCATACCATCCTCATCCTTGTGATTATGA
TAAAATTACGCATGCAATGGGTGGAAGGTGGGCTTCTATAGAATATGATA
GAAAAGCCGGCTTCAATAGAGGCAGAAAGGGGGGAAGAGTGGGAGAGGGA
GATGGTGAAAAGACTTATGACATCGCTGTCGAGAGCATCAGCAACGCACT
AGCCAGCAGAACCACACGACAAGAAAAGATATGACTTCAAAAGGAATGTA
ACAAATGAAGGAGAAGCTCTTTGCCCTCCCCG
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Coding sequence (CDS) from alignment at chr8:566627..568308+

>NO08G01850.1 ID=NO08G01850.1|Name=NO08G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr8:566627..568308+ (Nannochloropsis oceanica)
ATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCGGCCCT
CCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTGCTTTC
GTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTAGCGGT
GGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACGCCACA
ATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACACGAACG
ATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGATGCGT
AAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAGGCGTT
GCTGGAGAAAGAGCCTGACAACGCCTCCCTCAAACTCAAACTCGCCAACG
CCAGCGTTTCCCTCCTTCGGTCTGTTACTAACGCTAACGCCGTCCTTATC
GATGGCATCTCCGATAGTGAGGCCAATCGAAAATTGTGGAAACAATACGC
GTTCACTGCCTACGACCTTCTCAAAGACCTGCACAAATCCCAACCAGACA
ACCCCCAAATCCACGTCTTGATGACCGAGGCCTATACCTACCGTACCTCC
AGCAAGGGCATCCTCAAGGCAGCAGTCACAGGAGACGGACTCACATTCAT
GAAGCTGGTCAATCAGATCGTGAAGAGTCATCCCACCTACGATGCCGGGG
TTCCATTTATCTTCCGCGGGGCCTTTCTACTGGCTGCGCCCTGGCCCCTG
CGAGACGTACCCAAGGCGGTCGAAGCCTTCCAAGCTGCGTGCAAAATAGA
GCCGAGAAGCCTGCGGAATAATTACTTTCTGGGAGTTTCTCAGTTTCATG
CCGGCGCGTGGAAGGAGGCAGCGGAGGCCTTCACGCGTGCTGTGGGAGGG
GAAGTGGAATCGGTGGCAGCGACCGAGAAGGATGTAGCCGAGTTTTTGAA
AAGAGAGAGCAGGCGGTCATTGGACGTGACCAAAGGGAAGATTGCGGCAA
CCAAGATGTAG
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Synonyms
Publications