NO08G01710.1, NO08G01710.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01710.1
Unique Name	NO08G01710.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2308
Alignment location	chr8:535773..538930 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:535773..538930 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G01710.1 vs.
Match: EWM26664.1 (Tetratricopeptide-like helical protein [Nannochloropsis gaditana])

HSP 1 Score: 433.3 bits (1113), Expect = 5.900e-118
Identity = 214/292 (73.29%), Postives = 247/292 (84.59%), Query Frame = 0

Query:    1 MEGLDQVLKQGDSTAVLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLRERYPTDPVVWKRWVALAKAEGDLPEAIKRCNEYLKVFQGDTSAWQELAALYVRTGHLHEAAFCYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSS--SSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATLSRQA 291
            ME LDQVL++GDS A+L+Y+RH+RIRAS EVVQHG+DFV +GKGSSLG EAWPVYEQVFLAALDLGETLLAE +L LL+K+FPDSARVGRL GM  EAEG +  AA+VY  LRE +PTDPVVWKRWV+LAKA+GDLPEAIKRCNEYLKVFQ D+SAWQELA LY+ TGHL +AAFCYEELVL  P+ F+ HVALAE Y  +GG ESLRLARKHYAQ+MELH GDDNLR+LYGMC+TCHALAR +  S+  D++D+ VN ALF LA DKLK HY R NP++ P VE TL +QA
Sbjct:    1 MEELDQVLERGDSVAILRYLRHNRIRASAEVVQHGQDFVAKGKGSSLGIEAWPVYEQVFLAALDLGETLLAERALGLLRKQFPDSARVGRLVGMQAEAEGTYAVAAEVYKSLREAHPTDPVVWKRWVSLAKAQGDLPEAIKRCNEYLKVFQNDSSAWQELAELYLLTGHLGKAAFCYEELVLSGPSIFSHHVALAEVYAAMGGAESLRLARKHYAQSMELHQGDDNLRSLYGMCSTCHALARCTHKSAHEDKSDAAVNGALFKLAVDKLKSHYRRVNPSMLPLVEVTLLQQA 292

The following BLAST results are available for this feature:

BLAST of NO08G01710.1 vs.

BLAST of NO08G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26664.1	5.900e-118	73.29	Tetratricopeptide-like helical protein [Nannochlor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G01710	NO08G01710	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01710.1	NO08G01710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01710.1.cds1	NO08G01710.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01710.1.cds2	NO08G01710.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01710.1.cds3	NO08G01710.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01710.1.cds4	NO08G01710.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01710.1.cds5	NO08G01710.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01710.1.cds6	NO08G01710.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01710.1.cds7	NO08G01710.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:535773..538930-
coding sequence from alignment at chr8:535773..538930-

mRNA sequence

>NO08G01710.1 ID=NO08G01710.1|Name=NO08G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp
AAAAGGCATATCTCGCGATATCTCCTGAATATGTATATCTTTAATTTCCA
CTTCCTTCTCCATTCAACATCGCCCTTATGCTACATCACCTCCTCCCCCT
CACACTCTCCTTCCCCCCCTCCCCCCACCCAGTAATCCGCAATCCCCAAG
GCAACCACACAACTCTCCCTCACCACCACCTCCCCATCCTGCATAAACTT
TGCCAAGATTGTCTCACACTCCTCTCCCCCCACAGCTCCCAGCGCCTCAG
CCGCCTCATGCCTCACCATCCTATGCTCTTGCTCGTTCTCCAACACCAAC
TTCAGTGCAGGGACTGATGCTGGGTTCTGCATCTGCCCGAACACGTACGC
AACCTCATGCCGAAACAATGGGCTCGAATCCCTGAAGCCCTCCGCCAGCG
CTGCCACTGCCTCAGTCGTATTCCGATTCCGCAAGGAGAACATGGCACGG
TATCGAGTAAAGAGAGGCAATGAAGGGTCGAGCAAACGGGCCTGAAGCTC
CGCTGTGCTCAAATCCTGCCTGTCTGCCGGAGCGGGGTCCACGGACAAAT
ACGGGCTCTTATCCAATGATCCCTCTTGTTGTCGTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGGTGCCATCGGATCAGGTCGAGGGACAGACGGCA
TGTGTCGGCCACCTCAGGCACAGGGTCTTGGGCGTATTTCTCCAGAACCG
ACACTGACTCCGGCTCTGCAATCGCACCCAGTGCTTCGGCTGCCTCGTGC
CGCACCATCGAGTCGTCGCGTTCGTCCGACAGCACTGCCACGAGCGTAGG
GCAGGCGGCCCGGTCCCGAATCTGGCCCAGGACGTATGCGAGCTCATGTC
GGAGCAAGGCAGAGTCTTGCTTGTTCCGCAAGGCCTCACCAATGGCGGCG
ACGGCCTCGGAGCCTCCATCGGTACGCAGAACAAAGGCAGCGTGGGTACG
CTTTTGGATTGGCTGCTGCACGTCGACCAGGCAGTCGCGAAGAGCCGCCA
CGTTTGGAGCCATTGGAGGATAGGATAGGAGCTGTAATCCAGGGTGTGGA
GGTCAGTGGTGAGCAAGAGAACGTTTGTGAGCGCGCAAATGGACCAACTA
ACCATGTCGTATTTGTTAAGACGTAGATGAGGTGGTCACTGTAATCATGT
CCCTTGTGCATGGCCAGGGACACGGGAGGCCCGCCGGCCTGCCTCCTCGC
TGATAATATAACACTTACAACAGAGAAGGCCCTCCGAGGGGGAGTCCTTC
TTGCCTTCGTCGCCATCATCACGCCTTTGGCCACAGCTTCTGATTGCACC
TACACTACACAACAAAAAGCAGACATAGCATGGAAGGTCTCGACCAAGTG
CTGAAGCAGGGCGACTCGACGGCAGTCCTAAAGTACATACGGCATCATAG
GATTCGTGCATCGACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCATGG
AGGGCAAGGGGAGCAGCCTGGGGGACGAAGCTTGGCCCGTGTACGAGCAG
GTTTTCCTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGCAGAGACTTC
GCTGAGACTTCTACAAAAGAAATTCCCGGATAGCGCACGGGTTGGACGAT
TGGAGGGGATGATATGCGAGGCAGAGGGAGATTTTGAACAGGCTGCAAAG
GTGTATCTGGATCTGCGGGAGCGATACCCTACGGACCCGGTGGTATGGAA
GCGGTGGGTGGCTTTGGCCAAGGCCGAGGGGGACTTGCCCGAGGCGATAA
AGCGCTGCAACGAGTATCTCAAGGTCTTCCAGGGCGACACTAGCGCGTGG
CAAGAGCTGGCTGCTTTATATGTTCGGACAGGCCACTTACACGAAGCCGC
TTTTTGTTACGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCCTTTC
ACGTTGCATTGGCCGAGGCGTATGTGGGAATAGGCGGAGGCGAATCTTTG
AGGCTAGCACGGAAGCATTACGCGCAGGCGATGGAGTTGCATGGGGGGGA
TGATAATTTGCGAGCCCTGTACGGAATGTGTGCGACATGCCACGCCCTGG
CCCGCAGCAGCAGCAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCT
GCCCTTTTCAATCTGGCGGGGGACAAGCTCAAGGAACACTACACACGGGC
TAACCCTGCCCTCTTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCG
CGGATGTGTGTTAGTGACCGCATAGATGTAGAAATGCCTGCGAGAACAAT
TCAGACAAGGAGAAAGGGAAATGAAGAAAGAAACAAAAATGAAATTCGTT
AGTTTTGG

protein sequence of NO08G01710.1

>NO08G01710.1-protein ID=NO08G01710.1-protein|Name=NO08G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MEGLDQVLKQGDSTAVLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDE
AWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEG
DFEQAAKVYLDLRERYPTDPVVWKRWVALAKAEGDLPEAIKRCNEYLKVF
QGDTSAWQELAALYVRTGHLHEAAFCYEELVLCSPANFAFHVALAEAYVG
IGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDE
TDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATLSRQAADVC*

mRNA from alignment at chr8:535773..538930-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G01710.1 ID=NO08G01710.1|Name=NO08G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3158bp|location=Sequence derived from alignment at chr8:535773..538930- (Nannochloropsis oceanica)
AAAAGGCATATCTCGCGATATCTCCTGAATATGTATATCTTTAATTTCCA
CTTCCTTCTCCATTCAACATCGCCCTTATGCTACATCACCTCCTCCCCCT
CACACTCTCCTTCCCCCCCTCCCCCCACCCAGTAATCCGCAATCCCCAAG
GCAACCACACAACTCTCCCTCACCACCACCTCCCCATCCTGCATAAACTT
TGCCAAGATTGTCTCACACTCCTCTCCCCCCACAGCTCCCAGCGCCTCAG
CCGCCTCATGCCTCACCATCCTATGCTCTTGCTCGTTCTCCAACACCAAC
TTCAGTGCAGGGACTGATGCTGGGTTCTGCATCTGCCCGAACACGTACGC
AACCTCATGCCGAAACAATGGGCTCGAATCCCTGAAGCCCTCCGCCAGCG
CTGCCACTGCCTCAGTCGTATTCCGATTCCGCAAGGAGAACATGGCACGG
TATCGAGTAAAGAGAGGCAATGAAGGGTCGAGCAAACGGGCCTGAAGCTC
CGCTGTGCTCAAATCCTGCCTGTCTGCCGGAGCGGGGTCCACGGACAAAT
ACGGGCTCTTATCCAATGATCCCTCTTGTTGTCGTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGGTGCCATCGGATCAGGTCGAGGGACAGACGGCA
TGTGTCGGCCACCTCAGGCACAGGGTCTTGGGCGTATTTCTCCAGAACCG
ACACTGACTCCGGCTCTGCAATCGCACCCAGTGCTTCGGCTGCCTCGTGC
CGCACCATCGAGTCGTCGCGTTCGTCCGACAGCACTGCCACGAGCGTAGG
GCAGGCGGCCCGGTCCCGAATCTGGCCCAGGACGTATGCGAGCTCATGTC
GGAGCAAGGCAGAGTCTTGCTTGTTCCGCAAGGCCTCACCAATGGCGGCG
ACGGCCTCGGAGCCTCCATCGGTACGCAGAACAAAGGCAGCGTGGGTACG
CTTTTGGATTGGCTGCTGCACGTCGACCAGGCAGTCGCGAAGAGCCGCCA
CGTTTGGAGCCATTGGAGGATAGGATAGGAGCTGTAATCCAGGGTGTGGA
GGTCAGTGGTGAGCAAGAGAACGTTTGTGAGCGCGCAAATGGACCAACTA
ACCATGTCGTATTTGTTAAGACGTAGATGAGGTGGTCACTGTAATCATGT
CCCTTGTGCATGGCCAGGGACACGGGAGGCCCGCCGGCCTGCCTCCTCGC
TGATAATATAACACTTACAACAGAGAAGGCCCTCCGAGGGGGAGTCCTTC
TTGCCTTCGTCGCCATCATCACGCCTTTGGCCACAGCTTCTGATTGCACC
TACACTACACAACAAAAAGCAGACATAGCATGGAAGGTCTCGACCAAGTG
CTGAAGCAGGGCGACTCGACGGCAGTCCTAAAGTACATACGGCATCATAG
GGTACGTTAATAATTCATCCCCTCCCGCTCGAAGTTCCACCATTACATGC
GCTGCAACGTCCTCCCTTACGCCGCCACCCATCAACACCACCTTTAGATT
CGTGCATCGACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGG
CAAGGGGAGCAGCCTGGGGGACGAAGGTAGGATGAGGGTCTCAAGTGGGC
AGGCTTGGAGGAAGGGGGGAAGTGTGACAATTTAAGTGTGACAATTTCTG
CTTAATTGTCCTAAACATCCCGACCTCACAAATGCACAGCTTGGCCCGTG
TACGAGCAGGTTTTCCTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGC
AGAGGTCAGTGGTGCACGTGAGAAAAGCTCTCCCTTCTCCAGTCTTTTCA
CCCCACTTTTCCCCGCTCGCACAACAGACTTCGCTGAGACTTCTACAAAA
GAAATTCCCGGATAGCGCACGGGTTGGACGATTGGAGGGGATGATATGCG
AGGCAGAGGGAGATTTTGAACAGGCTGCAAAGGTGTATCTGGATCTGCGG
GAGCGATACCCTACGGACCCGGTGAGTTTTCTTTACTTGGAGTGTCAGTT
GCCGTGGGCAGAAGTAGGCGTTTCCTCCTGATTTCATTGTTACAGTTAAA
GTTTTCTTTGTACCGCTCTCGAGGAATTTCCTCATTCGTCCCTCCCCCAT
CAAAACAGGTGGTATGGAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGGGG
GACTTGCCCGAGGCGATAAAGCGCTGCAACGAGTATCTCAAGGTCTTCCA
GGGCGACACTAGCGCGGTGAGTTCGAAAAGAAGGATGATGATGAAAACGC
AAGGAGGGGGCGATGGGAATATTTTGTGCGCTTGCTGGCTGGAAGGCGTC
TCACGCGTCGGCAATTTTTAATTTGGGAGTAAAAGAGTGTGAGGGTAATC
AAACGGCTGCGCATGTATGCTTTCCTCACGAGAATCTGCGCTATATATAT
CAACTCAAGTTTCATCATACGTACATTCGTTTCCAATCCCATTATTATTA
GTGGCAAGAGCTGGCTGCTTTATATGTTCGGACAGGCCACTTACACGAAG
CCGCTTTTTGTTACGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCC
TTTCACGTTGCATTGGCCGAGGCGTATGTGGGAATAGGCGGAGGCGAATC
TTTGAGGCTAGCACGGAAGCATTACGCGCAGGCGATGGAGTTGCATGGGG
GGGATGATAATTTGCGAGCCCTGTACGGAATGTGTGCGGTGAGTCTGAGA
AAGAGAGGGGAATGGGGAGAGGTTGGTAGAGGAACTTGCTTGGATGCCTC
CTTCCTACTTATCGAAGCTCGTTGACGCCAAGCTAGGATTGTCCTCCTTC
TTTCAATTCTGCCTCCGTGTTGTCCTCAAAAGCGCTTCCCCCCTCTTTTC
CCTTTTTCCTTCCCTTCCCTACTGTCACCCCCAGACATGCCACGCCCTGG
CCCGCAGCAGCAGCAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCT
GCCCTTTTCAATCTGGCGGGGGACAAGCTCAAGGAACACTACACACGGGC
TAACCCTGCCCTCTTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCG
CGGATGTGTGTTAGTGACCGCATAGATGTAGAAATGCCTGCGAGAACAAT
TCAGACAAGGAGAAAGGGAAATGAAGAAAGAAACAAAAATGAAATTCGTT
AGTTTTGG

Coding sequence (CDS) from alignment at chr8:535773..538930-

>NO08G01710.1 ID=NO08G01710.1|Name=NO08G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr8:535773..538930- (Nannochloropsis oceanica)
ATGGAAGGTCTCGACCAAGTGCTGAAGCAGGGCGACTCGACGGCAGTCCT
AAAGTACATACGGCATCATAGGATTCGTGCATCGACAGAAGTCGTGCAGC
ATGGGCGAGATTTTGTCATGGAGGGCAAGGGGAGCAGCCTGGGGGACGAA
GCTTGGCCCGTGTACGAGCAGGTTTTCCTGGCGGCCTTGGACCTTGGTGA
GACGCTGCTGGCAGAGACTTCGCTGAGACTTCTACAAAAGAAATTCCCGG
ATAGCGCACGGGTTGGACGATTGGAGGGGATGATATGCGAGGCAGAGGGA
GATTTTGAACAGGCTGCAAAGGTGTATCTGGATCTGCGGGAGCGATACCC
TACGGACCCGGTGGTATGGAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGG
GGGACTTGCCCGAGGCGATAAAGCGCTGCAACGAGTATCTCAAGGTCTTC
CAGGGCGACACTAGCGCGTGGCAAGAGCTGGCTGCTTTATATGTTCGGAC
AGGCCACTTACACGAAGCCGCTTTTTGTTACGAGGAGCTTGTTCTCTGCA
GCCCAGCCAATTTTGCCTTTCACGTTGCATTGGCCGAGGCGTATGTGGGA
ATAGGCGGAGGCGAATCTTTGAGGCTAGCACGGAAGCATTACGCGCAGGC
GATGGAGTTGCATGGGGGGGATGATAATTTGCGAGCCCTGTACGGAATGT
GTGCGACATGCCACGCCCTGGCCCGCAGCAGCAGCAGCGCAAGCGACGAA
ACAGACAGCCGTGTCAATGCTGCCCTTTTCAATCTGGCGGGGGACAAGCT
CAAGGAACACTACACACGGGCTAACCCTGCCCTCTTCCCCTTCGTTGAAG
CCACGCTTTCCCGGCAAGCCGCGGATGTGTGTTAG

Synonyms

Publications