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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:505424..507151 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01620.1 vs.
Match: EWM26587.1 (UAA transporter [Nannochloropsis gaditana]) HSP 1 Score: 579.3 bits (1492), Expect = 8.400e-162 Identity = 291/381 (76.38%), Postives = 323/381 (84.78%), Query Frame = 0
Query: 1 MDFLPPHLRVPAAVASYSVCSGTMLLFNKLAMYYVPVPSFVTVVQLLFAVGIILLLQRLHIVPPDPLESSRVKPYLVYTVAFVLGVYCNMRALSHSNVETVIIFRSCTPLAVSLCDFIFLGRELPSRRSCLALLTIAAGAYGYVQTDSQFKMDGLAAYSWAILYFVTICFEMTYGKKITSGVRFNSMWGPTFYTNFLSVAPMFCLGYLMGDFQDFSLMEGGSGLGGGEAWMWTKMGLVMLAVSSVVGTLIGYTGWSCRSLVSATTFTLVGVINKFITILLNVFIWDKHASPLGISALVLCLVGGSFYQQAPMRAVDKPLGADEFFKLGYQMEMDEYD--SKEVLKGAGSIEAVPLIMSTEG------GRNGGEKQVPVGAV 374
MDFLP HLRVP AVASYSVCSGTMLLFNKLAM+YVPVPS VTV+QLL AV IIL LQ + ++PPDPLESS+VKPYL+YT+AFVLGVYCNMRAL+HSNVETVIIFRSCTPLAV+LCD++FLGRELPS+RSCLALLTIA GAYGYVQTDSQFKMDGLAAY+WAILYFVTICFEMTYGKKITSG+RFNSMWGPTFYTNFLSV PMF LGYLMGDF+DFS EG G G E W WT G+VML VSS++GTLIGYT WSCRSLVSATTFTLVGVINKFITILLNVFIWDKHASPLGI ALVLCL+GGSFY+QAPMR D+ L + EFF +G ++E DE +E ++ VPLI+STEG G ++Q P GAV
Sbjct: 1 MDFLPAHLRVPLAVASYSVCSGTMLLFNKLAMHYVPVPSLVTVIQLLSAVVIILSLQWVRVIPPDPLESSKVKPYLLYTIAFVLGVYCNMRALAHSNVETVIIFRSCTPLAVALCDYVFLGRELPSQRSCLALLTIALGAYGYVQTDSQFKMDGLAAYTWAILYFVTICFEMTYGKKITSGIRFNSMWGPTFYTNFLSVTPMFLLGYLMGDFKDFSAAEGTRGSQGAELWKWTTAGVVMLVVSSLMGTLIGYTSWSCRSLVSATTFTLVGVINKFITILLNVFIWDKHASPLGIMALVLCLIGGSFYKQAPMRPTDRSLNSIEFFAMGTELEKDELAEVEREANAKITELDTVPLIVSTEGKKLAFFGHQADDRQAPAGAV 381
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01620.1 ID=NO08G01620.1|Name=NO08G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
AAAAGACAGGTTACACGCGCAACCATTCGACACTCTAAAAAAATGGATTT
CCTGCCACCGCATCTGCGGGTGCCTGCTGCCGTAGCCTCCTACTCGGTAT
GCAGCGGGACCATGCTTCTGTTCAACAAACTGGCCATGTACTACGTGCCC
GTCCCGTCTTTCGTGACAGTTGTCCAACTACTCTTCGCCGTTGGCATCAT
CCTCCTCCTTCAACGCCTGCACATCGTCCCCCCCGATCCTCTGGAAAGCA
GCAGAGTCAAACCCTACCTTGTCTACACTGTCGCCTTCGTCTTGGGCGTG
TACTGCAACATGCGCGCCCTTTCTCACTCGAACGTTGAGACGGTCATTAT
CTTTCGGTCCTGTACCCCTTTAGCTGTCTCGTTGTGTGACTTCATTTTCC
TGGGGCGGGAGTTGCCTTCCCGTCGGTCGTGCTTGGCTCTGTTGACGATT
GCGGCGGGTGCCTACGGTTATGTCCAAACCGATAGCCAGTTTAAGATGGA
TGGGCTGGCGGCATATTCGTGGGCGATTCTATATTTTGTGACCATCTGTT
TCGAGATGACGTACGGGAAGAAGATCACGAGTGGAGTGAGGTTTAACAGC
ATGTGGGGCCCTACTTTTTACACGAATTTTTTGAGTGTCGCGCCGATGTT
TTGCCTGGGTTATCTAATGGGAGATTTCCAGGACTTTAGTTTGATGGAGG
GAGGGAGTGGGTTAGGGGGTGGGGAAGCGTGGATGTGGACGAAGATGGGC
TTGGTCATGTTGGCGGTTAGTTCTGTCGTGGGGACGTTGATAGGGTACAC
GGGGTGGAGTTGTAGGAGCTTGGTGTCGGCGACCACGTTTACGCTGGTGG
GGGTTATTAATAAGTTTATCACAATTCTCTTGAATGTGTTCATTTGGGAT
AAGCATGCGTCGCCGCTGGGGATTTCGGCGTTGGTGCTTTGTTTGGTGGG
GGGGTCGTTCTACCAGCAGGCGCCGATGCGGGCGGTTGACAAGCCGTTGG
GCGCGGACGAGTTTTTTAAGCTAGGGTATCAGATGGAGATGGACGAGTAT
GATAGCAAGGAGGTATTGAAGGGGGCAGGGTCCATTGAGGCGGTGCCGTT
GATTATGTCCACGGAGGGGGGAAGGAATGGGGGGGAGAAGCAGGTCCCGG
TGGGTGCGGTCTAATTTTTTTGGTGGGGAGGAGGTGGCGAGAATGTTTCT
CAGAAGGCCGGCTGTGGCATCCTGGGCATTCCGATGGTTTCAAAAATGTA
CGGTAGGTGATTGCCCTGCCGGTGGTGGTACTAGCATGCGATGCAAAAAA
TGTAAATGAGAAGCAGGCTTTTCCTGCGAGCCTAGAAAGCAATTGCGCGA
ATTTTTAATATATCCGTAGGGCTGTCAGAAAAAGTTACCTTCATGCTTCA
CGAACAATCTCATCACATGGATATTAAAAAAAATAGACCAGATATCTCCA
AATAATGTGTCGACAGCAGTCATTTAAAGACAACAAAAGAAATTGTTTCA
GGC back to topprotein sequence of NO08G01620.1 >NO08G01620.1-protein ID=NO08G01620.1-protein|Name=NO08G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MDFLPPHLRVPAAVASYSVCSGTMLLFNKLAMYYVPVPSFVTVVQLLFAV
GIILLLQRLHIVPPDPLESSRVKPYLVYTVAFVLGVYCNMRALSHSNVET
VIIFRSCTPLAVSLCDFIFLGRELPSRRSCLALLTIAAGAYGYVQTDSQF
KMDGLAAYSWAILYFVTICFEMTYGKKITSGVRFNSMWGPTFYTNFLSVA
PMFCLGYLMGDFQDFSLMEGGSGLGGGEAWMWTKMGLVMLAVSSVVGTLI
GYTGWSCRSLVSATTFTLVGVINKFITILLNVFIWDKHASPLGISALVLC
LVGGSFYQQAPMRAVDKPLGADEFFKLGYQMEMDEYDSKEVLKGAGSIEA
VPLIMSTEGGRNGGEKQVPVGAV* back to topmRNA from alignment at chr8:505424..507151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01620.1 ID=NO08G01620.1|Name=NO08G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at chr8:505424..507151- (Nannochloropsis oceanica)
AAAAGACAGGTTACACGCGCAACCATTCGACACTCTAAAAAAATGGATTT
CCTGCCACCGCATCTGCGGGTGCCTGCTGCCGTAGCCTCCTACTCGGTAT
GCAGCGGGACCATGCTTCTGTTCAACAAACTGGCCATGTACTACGGTATG
TCTCGTGTTCGAGGAAAATACGGGGAGAAAAAGGCGGAGACGGAGGACAG
AGTGACAGATAGTTGGGTGATAAAAGGGTATCAAGACGCACGAGGACGCT
TATGAGACTGGGGCCTGCCACACTCGAGCTTCAGTACTTCGCCCACCCCG
CGTCGGCGCACGATTTACCAACCTCGTACCTCATTTTCACTCTCTCTCCT
TTCTCCACCTACACAAACAGTGCCCGTCCCGTCTTTCGTGACAGTTGTCC
AACTACTCTTCGCCGTTGGCATCATCCTCCTCCTTCAACGCCTGCACATC
GTCCCCCCCGATCCTCTGGAAAGCAGCAGAGTCAAACCCTACCTTGTCTA
CACTGTCGCCTTCGTCTTGGGCGTGTACTGCAACATGCGCGCCCTTTCTC
ACTCGAACGTTGAGACGGTCATTATCTTTCGGTCCTGTACCCCTTTAGCT
GTCTCGTTGTGTGACTTCATTTTCCTGGGGCGGGAGTTGCCTTCCCGTCG
GTCGTGCTTGGCTCTGTTGACGATTGCGGCGGGTGCCTACGGTTATGTCC
AAACCGATAGCCAGTTTAAGATGGATGGGCTGGCGGCATATTCGTGGGCG
ATTCTATATTTTGTGACCATCTGTTTCGAGATGACGTACGGGAAGAAGAT
CACGAGTGGAGTGAGGTTTAACAGCATGTGGGGCCCTACTTTTTACACGA
ATTTTTTGAGTGTCGCGCCGATGTTTTGCCTGGGTTATCTAATGGGAGAT
TTCCAGGACTTTAGTTTGATGGAGGGAGGGAGTGGGTTAGGGGGTGGGGA
AGCGTGGATGTGGACGAAGATGGGCTTGGTCATGTTGGCGGTTAGTTCTG
TCGTGGGGACGTTGATAGGGTACACGGGGTGGAGTTGTAGGAGCTTGGTG
TCGGCGACCACGTTTACGCTGGTGGGGGTTATTAATAAGTTTATCACAAT
TCTCTTGAATGTGTTCATTTGGGATAAGCATGCGTCGCCGCTGGGGATTT
CGGCGTTGGTGCTTTGTTTGGTGGGGGGGTCGTTCTACCAGCAGGCGCCG
ATGCGGGCGGTTGACAAGCCGTTGGGCGCGGACGAGTTTTTTAAGCTAGG
GTATCAGATGGAGATGGACGAGTATGATAGCAAGGAGGTATTGAAGGGGG
CAGGGTCCATTGAGGCGGTGCCGTTGATTATGTCCACGGAGGGGGGAAGG
AATGGGGGGGAGAAGCAGGTCCCGGTGGGTGCGGTCTAATTTTTTTGGTG
GGGAGGAGGTGGCGAGAATGTTTCTCAGAAGGCCGGCTGTGGCATCCTGG
GCATTCCGATGGTTTCAAAAATGTACGGTAGGTGATTGCCCTGCCGGTGG
TGGTACTAGCATGCGATGCAAAAAATGTAAATGAGAAGCAGGCTTTTCCT
GCGAGCCTAGAAAGCAATTGCGCGAATTTTTAATATATCCGTAGGGCTGT
CAGAAAAAGTTACCTTCATGCTTCACGAACAATCTCATCACATGGATATT
AAAAAAAATAGACCAGATATCTCCAAATAATGTGTCGACAGCAGTCATTT
AAAGACAACAAAAGAAATTGTTTCAGGC back to topCoding sequence (CDS) from alignment at chr8:505424..507151- >NO08G01620.1 ID=NO08G01620.1|Name=NO08G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr8:505424..507151- (Nannochloropsis oceanica)
ATGGATTTCCTGCCACCGCATCTGCGGGTGCCTGCTGCCGTAGCCTCCTA
CTCGGTATGCAGCGGGACCATGCTTCTGTTCAACAAACTGGCCATGTACT
ACGTGCCCGTCCCGTCTTTCGTGACAGTTGTCCAACTACTCTTCGCCGTT
GGCATCATCCTCCTCCTTCAACGCCTGCACATCGTCCCCCCCGATCCTCT
GGAAAGCAGCAGAGTCAAACCCTACCTTGTCTACACTGTCGCCTTCGTCT
TGGGCGTGTACTGCAACATGCGCGCCCTTTCTCACTCGAACGTTGAGACG
GTCATTATCTTTCGGTCCTGTACCCCTTTAGCTGTCTCGTTGTGTGACTT
CATTTTCCTGGGGCGGGAGTTGCCTTCCCGTCGGTCGTGCTTGGCTCTGT
TGACGATTGCGGCGGGTGCCTACGGTTATGTCCAAACCGATAGCCAGTTT
AAGATGGATGGGCTGGCGGCATATTCGTGGGCGATTCTATATTTTGTGAC
CATCTGTTTCGAGATGACGTACGGGAAGAAGATCACGAGTGGAGTGAGGT
TTAACAGCATGTGGGGCCCTACTTTTTACACGAATTTTTTGAGTGTCGCG
CCGATGTTTTGCCTGGGTTATCTAATGGGAGATTTCCAGGACTTTAGTTT
GATGGAGGGAGGGAGTGGGTTAGGGGGTGGGGAAGCGTGGATGTGGACGA
AGATGGGCTTGGTCATGTTGGCGGTTAGTTCTGTCGTGGGGACGTTGATA
GGGTACACGGGGTGGAGTTGTAGGAGCTTGGTGTCGGCGACCACGTTTAC
GCTGGTGGGGGTTATTAATAAGTTTATCACAATTCTCTTGAATGTGTTCA
TTTGGGATAAGCATGCGTCGCCGCTGGGGATTTCGGCGTTGGTGCTTTGT
TTGGTGGGGGGGTCGTTCTACCAGCAGGCGCCGATGCGGGCGGTTGACAA
GCCGTTGGGCGCGGACGAGTTTTTTAAGCTAGGGTATCAGATGGAGATGG
ACGAGTATGATAGCAAGGAGGTATTGAAGGGGGCAGGGTCCATTGAGGCG
GTGCCGTTGATTATGTCCACGGAGGGGGGAAGGAATGGGGGGGAGAAGCA
GGTCCCGGTGGGTGCGGTCTAA back to top
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