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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:485481..489772 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01560.1 vs.
Match: EWM26684.1 (glyceraldehyde-3-phosphate dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 559.7 bits (1441), Expect = 6.700e-156 Identity = 271/289 (93.77%), Postives = 283/289 (97.92%), Query Frame = 0
Query: 73 MFKYDTVHGRYKGVVSHDEHNLIIDGKKVRCFQDMKAGDIKWDSVGADYIVDATGINLTKGTAEAHFKHGAKKVVMSAPSKDDTPMFVCGVNLDAYKGEKIVSNASCTTNCLAPLAKVINDTFGLDEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSGTGAAKAVGKVIPALNGKLTGMAFRVPTADVSVVDLTCRLKKGASYDEIKAVLKAASEGPLAGILGYTEDEVVSTDFYGDTHSSIFDAKAGIALSPNFVKLVSWYDNEAGYSNRVLDLIKHIAKH 362
MFKYDTVHGRYKG VSHDEHNLIIDGK+V+C+Q+M+AG IKWD+VGADYIVDATGINLTKGTAEAHFK+GAKKVVMSAPSKDDTPMFVCGVNL+AYKGEKIVSNASCTTNCLAPLAKVINDTFGL+EGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPS TGAAKAVGKVIPALNGKLTGMAFRVPTADVSVVDLTCRLKKGASYDEIKA LKAASEGP+ GILGYTED+VVSTDFYGD HSSIFDAKAGIAL+PNFVKLVSWYDNEAGYSNRVLDLIKHIAKH
Sbjct: 1 MFKYDTVHGRYKGSVSHDEHNLIIDGKEVKCYQEMEAGKIKWDAVGADYIVDATGINLTKGTAEAHFKNGAKKVVMSAPSKDDTPMFVCGVNLEAYKGEKIVSNASCTTNCLAPLAKVINDTFGLEEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTADVSVVDLTCRLKKGASYDEIKAALKAASEGPMRGILGYTEDDVVSTDFYGDAHSSIFDAKAGIALTPNFVKLVSWYDNEAGYSNRVLDLIKHIAKH 289
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01560.1 ID=NO08G01560.1|Name=NO08G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp GGTCCCTGAATCAGCATTCTTCTTTATTGATTGAAAAGACATATACACAT GCTGTTTGTAAATGGATTTCCCGCTGTCTGTCCAAACGTCCCCTTGGGGG CCGACCGTCTCATCTCCCTCCTTCCTTCCTACTTTTAAAACAAGCTTGAC TTCTTCATGATCCGCATAAATTCCTCCTCGTTGATGAGCCCGTCGCCGTC CCGGTCCGCCTCATCTGGTAAGAGAAAAGGGAAAGGAAAAACAGGAGGGG AAGAAAAAGGTAAGAAAATGTATGAAGTAAAATGAAGATAGAAATGTCAT TCCTCTCCTCTCTCATTCATCACAAAGCCATGCTTAATTTCATTCGTCGA AAAGGAAAATTCATGTATGTTCCTCGAACCCTACCTAGCGCTTTTACAAA AAATCCGTTCATACCCCAACTTTCTCCCATCCTTCCCTTCAAACGTACCA ATCATCTCCTGCAACTCCTCGTCCGTCATTGACTCGCCCAATTCCCGGGC CACTCGCTTCAAATCCTGAAAACTTATCACGCCCTTCTCGCCCGCATCAA ATAATCGAAAGGCCTTGGCCATCTCCTCTCGACCGTCCTTCTCTCCCAGT TTGACTGCCATAATTTCCACAAAATGTTTGTATGAGATGCTGCCACTTTC GTCTCCGTCCACTGCCGATGCCACCAACCGGGCGACCTCCTCCTTTCTGG GCTCAAAACCTAAGGCGCGCATGGCTATGCGCAATTCCTTGCTGTCAATA TGCCCCGTGCCCTCTGTGTCAAATAAGTCAAAAGCCTCCTTAATTTCTTG TCGCTGCTCTTCACTCAGGGCTTGAATGGCTTTGCCTTTGCTGGAGGTAG CTTTGCTCGACGCCATTTCAAGATGTCGAGAAGCTTCTTGTGTGAAAGTA AGACTGGGCTGGTATAGAGCGTGACTGTTGCTGTTGCTTGTTCTGCGGTA TGCCTGCGAAGGGGTGGGGAGGGTGATGATGAGCATGACGGGATGACGCA GAGGTCATGAGTTTTTTTTTCTGCCTTTGACTCCTGCATGCGGTGGTTTA TGTATTGCATGCTATTCCTACCTTGCCACGAGTGCAGTCTGGAAGGGGAT ATGGGAAAAAAAGAGGGTGCGAAGGACGAAACATTTGTCAAGTGGTGTGT TCTCGTTGAGAAACGCAGACTCTTTCGGAAAAGAAGAGAAGAAAAGAGCG ATCGTGCATGCACGAGCAGTCTAGGCTCCTGGAAGTGAAAGTGGCATTTG GCTATTGTGTAAATGCATACGTGTTTGTTGTCTCTACCTGAGGAGACTTG CCTTTATCTCATTCGTGCTTGTCCAGGCTGTATGTCTTCGGGCACATTTG CTTGCGTCGTTGGCGCACCCCACCGTTGCTCTACGCAAAAACATACCCAC TGGACGATACTTAAACATACCCACTGGACGACACAGTCAATCACTACTGC CCTGAGCCATGTTCCGCGCGACTTCTGCCACTGCCCGCACCCTCGCGACT AACTCAAAAAAGGCCACCTTTACCACCTCCACCATCCGTAATGCCCCGCT TCGCGTGGGGATCAATGGCTTCGGCCGCATCGGGCGCCTTGTGCTTCGCG CTGCCCAGAACCACCCGGAGATCGAGGTCGTGGCCGTCAACGACCCGTTC ATTGACACCAATTACATCGAGTACATGTTCAAGTATGACACTGTCCATGG TCGCTACAAGGGCGTCGTCTCCCACGACGAACATAATCTCATCATTGACG GGAAGAAGGTGCGATGTTTCCAGGACATGAAGGCTGGGGATATCAAGTGG GACTCCGTCGGCGCCGACTATATCGTGGATGCCACTGGCATCAACCTGAC CAAGGGCACGGCCGAGGCGCACTTTAAGCACGGGGCCAAGAAGGTGGTCA TGTCCGCCCCTTCCAAGGACGACACCCCCATGTTTGTCTGCGGTGTGAAC CTGGACGCATACAAGGGCGAGAAGATCGTCTCCAATGCCTCCTGTACCAC TAACTGCCTGGCCCCTCTGGCCAAGGTTATCAACGATACCTTCGGCCTCG ACGAAGGCCTCATGACGACCGTGCACGCCGTGACTGCCACCCAAAAGACT GTGGATGGCCCGTCCAAGAAGGACTGGCGTGGAGGCCGAGGCGCGGGCTT TAACATCATTCCCTCGGGCACGGGGGCGGCCAAGGCGGTGGGAAAAGTGA TCCCGGCGCTAAACGGGAAGTTGACGGGCATGGCCTTCCGTGTCCCGACA GCTGACGTGTCCGTGGTGGACCTGACGTGCCGCTTGAAGAAGGGTGCGAG CTACGATGAAATCAAGGCGGTGCTTAAGGCAGCCAGCGAGGGGCCCCTGG CCGGTATCTTGGGGTACACGGAAGATGAAGTGGTCTCGACTGATTTCTAC GGCGACACCCACTCTTCCATCTTTGACGCCAAGGCCGGGATTGCCCTGAG CCCGAACTTCGTCAAGCTTGTGTCTTGGTACGACAACGAGGCTGGCTACT CCAACCGTGTGCTCGACCTGATCAAGCACATCGCCAAGCATTAAAGTGTC TCACCGTTCTCTTTCCGGAAGAGGGAGGGAGGGCAAGACAAGGAGGAATG ACAAGGAAAGCGGCGGGGGCGGGCGAGTTGGGGGGGAGACTACAGCACCG AGAAAGGATTTGGGTGTAGTTTTGGGCGGATTTTTTGCCCCATTTTTGGC TTAATGTCGGAGAGAAGTTAGCGAGGAGAGGAAGATGAGGTGGAAGAGAG AAGAACGGAAGGATGGAAGGAGGGAAGTAGATAGTGAGAGAGGGAGGGAG GAGGGGAGGGCTAAGCTCTCGGTTCAATCCTGATTGAAGATGAAAAATAT GTATGACATGCTTTCATTCATTAATTCGTTCAAC back to topprotein sequence of NO08G01560.1 >NO08G01560.1-protein ID=NO08G01560.1-protein|Name=NO08G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp MFRATSATARTLATNSKKATFTTSTIRNAPLRVGINGFGRIGRLVLRAAQ NHPEIEVVAVNDPFIDTNYIEYMFKYDTVHGRYKGVVSHDEHNLIIDGKK VRCFQDMKAGDIKWDSVGADYIVDATGINLTKGTAEAHFKHGAKKVVMSA PSKDDTPMFVCGVNLDAYKGEKIVSNASCTTNCLAPLAKVINDTFGLDEG LMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSGTGAAKAVGKVIPA LNGKLTGMAFRVPTADVSVVDLTCRLKKGASYDEIKAVLKAASEGPLAGI LGYTEDEVVSTDFYGDTHSSIFDAKAGIALSPNFVKLVSWYDNEAGYSNR VLDLIKHIAKH* back to topmRNA from alignment at chr8:485481..489772+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01560.1 ID=NO08G01560.1|Name=NO08G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=4292bp|location=Sequence derived from alignment at chr8:485481..489772+ (Nannochloropsis oceanica) GGTCCCTGAATCAGCATTCTTCTTTATTGATTGAAAAGACATATACACAT
GCTGTTTGTAAATGGATTTCCCGCTGTCTGTCCAAACGTCCCCTTGGGGG
CCGACCGTCTCATCTCCCTCCTTCCTTCCTACTTTTAAAACAAGCTTGAC
TTCTTCATGATCCGCATAAATTCCTCCTCGTTGATGAGCCCGTCGCCGTC
CCGGTCCGCCTCATCTGGTAAGAGAAAAGGGAAAGGAAAAACAGGAGGGG
AAGAAAAAGGTAAGAAAATGTATGAAGTAAAATGAAGATAGAAATGTCAT
TCCTCTCCTCTCTCATTCATCACAAAGCCATGCTTAATTTCATTCGTCGA
AAAGGAAAATTCATGTATGTTCCTCGAACCCTACCTAGCGCTTTTACAAA
AAATCCGTTCATACCCCAACTTTCTCCCATCCTTCCCTTCAAACGTACCA
ATCATCTCCTGCAACTCCTCGTCCGTCATTGACTCGCCCAATTCCCGGGC
CACTCGCTTCAAATCCTGAAAACTTATCACGCCCTTCTCGCCCGCATCAA
ATAATCGAAAGGCCTTGGCCATCTCCTCTCGACCGTCCTTCTCTCCCAGT
TTGACTGCCATAATTTCCACAAAATGTTTGTATGAGATGCTGCCACTTTC
GTCTCCGTCCACTGCCGATGCCACCAACCGGGCGACCTCCTCCTTTCTGG
GCTCAAAACCTAAGGCGCGCATGGCTATGCGCAATTCCTTGCTGTCAATA
TGCCCCGTGCCCTCTGTGTCAAATAAGTCAAAAGCCTCCTTAATTTCTTG
TCGCTGCTCTTCACTCAGGGCTTGAATGGCTTTGCCTTTGCTGGAGGTAG
CTTTGCTCGACGCCATTTCAAGATGTCGAGAAGCTTCTTGTGTGAAAGTA
AGACTGGGCTGGTATAGAGCGTGACTGTTGCTGTTGCTTGTTCTGCGGTA
TGCCTGCGAAGGGGTGGGGAGGGTGATGATGAGCATGACGGGATGACGCA
GAGGTCATGAGTTTTTTTTTCTGCCTTTGACTCCTGCATGCGGTGGTTTA
TGTATTGCATGCTATTCCTACCTTGCCACGAGTGCAGTCTGGAAGGGGAT
ATGGGAAAAAAAGAGGGTGCGAAGGACGAAACATTTGTCAAGTGGTGTGT
TCTCGTTGAGAAACGCAGACTCTTTCGGAAAAGAAGAGAAGAAAAGAGCG
ATCGTGCATGCACGAGCAGTCTAGGCTCCTGGAAGTGAAAGTGGCATTTG
GCTATTGTGTAAATGCATACGTGTTTGTTGTCTCTACCTGAGGAGACTTG
CCTTTATCTCATTCGTGCTTGTCCAGGCTGTATGTCTTCGGGCACATTTG
CTTGCGTCGTTGGCGCACCCCACCGTTGCTCTACGCAAAAACATACCCAC
TGGACGATACTTAAACATACCCACTGGACGACACAGTCAATCACTACTGC
CCTGAGCCATGTTCCGCGCGACTTCTGCCACTGCCCGCACCCTCGCGACT
AACTCAAAAAAGGTAAGTAAGGCGAAAGGCTGTTGAGATTCCCTTGCGAG
GATCTGATGGATGGATCGGGCGAGTGGGCGCGGTCAAAGACGCTTCTACT
GTCGCGGTTTCTGGGCATAAACATGTGCCAATAACCAACTTGCGCATATA
CGGGTGAAAAATTAAGTCAAAATTCGGGTGCATAGAGTGTATATGCGTGC
GGTCAGGTGTCCATCGACGACCTTTTTCCTCATCTTCCACCCACTCTATC
CTGTGCGTGTATCTCACGCAAAAGCAGACCCCACCTACACACTTATGATC
CTCTATCGTCGCATTTTCCATAGGCCACCTTTACCACCTCCACCATCCGT
AATGCCCCGCTTCGCGTGGGGATCAATGGCTTCGGCCGCATCGGGCGCCT
TGTGCTTCGCGCTGCCCAGAACCACCCGGAGATCGAGGTAGGTAACCCTG
AAGGACTGCACCTCTTCTTCCTCTTTTTCCTTTCTGTATGTCTGGTCGCT
CATTTAACTTAACCCTGTTATTTCTATCAATTCTTATTCGATCCTTTCCC
TTTCTTCTCCGTTTTTCCTACGTTCCCTCCCCTGCGACCACAGGTCGTGG
CCGTCAACGACCCGTTCATTGACACCAATTACATCGAGTACATGTTCAAG
TATGACACTGTCCATGGTCGCTACAAGGGCGTCGTCTCCCACGACGAACA
TAATCTCATCATTGGTAAGGCCCGAGGAGGAAGAGAGAAGACGATGTAAC
GTGAAGCACCCCGAAAAAGAAAAGAAAAAAGTAAGAGATGCCCACAGGCA
TGTTACAGTGACCCGGTGCATACTTTCTAATTCAGCTGTTATTCGCCCCC
ATACCCGCTTGATTTCATCGTAGACGGGAAGAAGGTGCGATGTTTCCAGG
ACATGAAGGCTGGGGATATCAAGTGGGACTCCGTCGGCGCCGACTATATC
GTGGATGCCACTGGTAAGTACAGAGGGGAGGGGGAGAGAGGGGGGGATTG
AGGCGTAGAGTGCGTACCTTAAACAATGGGGAAATAAAGAAAAAGGGCCT
TCAAATGGGCACGTGGCGTCTACTCACGAATCTTCTTTCACACCCTGCCC
GATCTCACTTTCCCCTCCAGGCATCAACCTGACCAAGGGCACGGCCGAGG
CGCACTTTAAGCACGGGGCCAAGAAGGTGGTCATGTCCGCCCCTTCCAAG
GACGACACCCCCATGTTTGTCTGCGGTGTGAACCTGGACGCATACAAGGG
CGAGAAGATCGTCTCCAATGCCTCCTGGTACGGAGGAAGGGCTACGGAGG
GAGGGAGGGAGGAAGGGAGGGAGGGATGGAATGACCGAGGGAAAAGAAGA
CTGTTGATGAGTTGCTATGACAATTGTGTGGAGTGAAGGACTGCCGAAAA
ATATCAATTCATGCCTCTCATATTTCCCCCTCATTCCCTCCCCCCTCCCA
GTACCACTAACTGCCTGGCCCCTCTGGCCAAGGTTATCAACGATACCTTC
GGCCTCGACGAAGGCCTCATGACGACCGTGCACGCCGTGACTGCCACCCA
AAAGACTGTGGATGGCCCGTCCAAGAAGGACTGGCGTGGAGGCCGAGGCG
CGGGCTTTAACATCATTCCCTCGGGCACGGGGGCGGCCAAGGCGGTGGGA
AAAGTGATCCCGGCGCTAAACGGGAAGTTGACGGGCATGGCCTTCCGTGT
CCCGACAGCTGACGTGTCCGTGGTGGACCTGACGTGCCGCTTGAAGAAGG
GTGCGAGCTACGATGAAATCAAGGCGGTGCTTAAGGCAGCCAGCGGTGAG
AAGGGAAGAAGGCAGGGGGGGAGGGAAGGAACGAGCTTGGTTGTGGAATG
GCATGTACTGGGTGAAAACATTTTATTTTTATTTTTTATTTAAAAAAAGG
GGGGGTGGAAGTGGTAGGGGGAATATTTGGGTTTTATGTCATTTTCGCGG
TATATCTTCATTTCTGCAACCCTCCCTCCTCCTCAAAACCCTTCCCTCCT
CCTCACCATCTCTCCATCCCCATCGCACACCCAGAGGGGCCCCTGGCCGG
TATCTTGGGGTACACGGAAGATGAAGTGGTCTCGACTGATTTCTACGGCG
ACACCCACTCTTCCATCTTTGACGCCAAGGCCGGGATTGCCCTGAGCCCG
AACTTCGTCAAGCTTGTGTCTTGGGTACGTGGCGTGTTTTCCTACTTGAT
GTTTCTCGGTCTGGGTCTCCAGCTTGATGTTTCTCAGTTTGGATGGGACG
ATTACTTTCTGTACTTCGAGCCTTTTTTACCCAACTTGCGATCTTTCACT
ACCTGCCTCTCCATCTCTCCATGACTAACTTCCCTCCCTCCCTTCCTTCC
TCCTCCCCATCCCATGTTCACCTACCTACGCAACAGTACGACAACGAGGC
TGGCTACTCCAACCGTGTGCTCGACCTGATCAAGCACATCGCCAAGCATT
AAAGTGTCTCACCGTTCTCTTTCCGGAAGAGGGAGGGAGGGCAAGACAAG
GAGGAATGACAAGGAAAGCGGCGGGGGCGGGCGAGTTGGGGGGGAGACTA
CAGCACCGAGAAAGGATTTGGGTGTAGTTTTGGGCGGATTTTTTGCCCCA
TTTTTGGCTTAATGTCGGAGAGAAGTTAGCGAGGAGAGGAAGATGAGGTG
GAAGAGAGAAGAACGGAAGGATGGAAGGAGGGAAGTAGATAGTGAGAGAG
GGAGGGAGGAGGGGAGGGCTAAGCTCTCGGTTCAATCCTGATTGAAGATG
AAAAATATGTATGACATGCTTTCATTCATTAATTCGTTCAAC back to topCoding sequence (CDS) from alignment at chr8:485481..489772+ >NO08G01560.1 ID=NO08G01560.1|Name=NO08G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr8:485481..489772+ (Nannochloropsis oceanica) ATGTTCCGCGCGACTTCTGCCACTGCCCGCACCCTCGCGACTAACTCAAA AAAGGCCACCTTTACCACCTCCACCATCCGTAATGCCCCGCTTCGCGTGG GGATCAATGGCTTCGGCCGCATCGGGCGCCTTGTGCTTCGCGCTGCCCAG AACCACCCGGAGATCGAGGTCGTGGCCGTCAACGACCCGTTCATTGACAC CAATTACATCGAGTACATGTTCAAGTATGACACTGTCCATGGTCGCTACA AGGGCGTCGTCTCCCACGACGAACATAATCTCATCATTGACGGGAAGAAG GTGCGATGTTTCCAGGACATGAAGGCTGGGGATATCAAGTGGGACTCCGT CGGCGCCGACTATATCGTGGATGCCACTGGCATCAACCTGACCAAGGGCA CGGCCGAGGCGCACTTTAAGCACGGGGCCAAGAAGGTGGTCATGTCCGCC CCTTCCAAGGACGACACCCCCATGTTTGTCTGCGGTGTGAACCTGGACGC ATACAAGGGCGAGAAGATCGTCTCCAATGCCTCCTGTACCACTAACTGCC TGGCCCCTCTGGCCAAGGTTATCAACGATACCTTCGGCCTCGACGAAGGC CTCATGACGACCGTGCACGCCGTGACTGCCACCCAAAAGACTGTGGATGG CCCGTCCAAGAAGGACTGGCGTGGAGGCCGAGGCGCGGGCTTTAACATCA TTCCCTCGGGCACGGGGGCGGCCAAGGCGGTGGGAAAAGTGATCCCGGCG CTAAACGGGAAGTTGACGGGCATGGCCTTCCGTGTCCCGACAGCTGACGT GTCCGTGGTGGACCTGACGTGCCGCTTGAAGAAGGGTGCGAGCTACGATG AAATCAAGGCGGTGCTTAAGGCAGCCAGCGAGGGGCCCCTGGCCGGTATC TTGGGGTACACGGAAGATGAAGTGGTCTCGACTGATTTCTACGGCGACAC CCACTCTTCCATCTTTGACGCCAAGGCCGGGATTGCCCTGAGCCCGAACT TCGTCAAGCTTGTGTCTTGGTACGACAACGAGGCTGGCTACTCCAACCGT GTGCTCGACCTGATCAAGCACATCGCCAAGCATTAA back to top
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