NO08G01550.1, NO08G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01550.1
Unique NameNO08G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1222
Alignment locationchr8:485481..486936 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:485481..486936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01550.1 vs.
Match: EWM26578.1 (centrin [Nannochloropsis gaditana])

HSP 1 Score: 243.4 bits (620), Expect = 6.000e-61
Identity = 126/162 (77.78%), Postives = 144/162 (88.89%), Query Frame = 0 
Query:   44 SKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            S   + K K +  L+EEQRQEIKEAF+LFDTEGTG IDSKELR+AMRALGFEP+KEEV RL A+A D D SG+I+YK FVE+M VK+GEKDGREEM KAFRLFDAGEKG ISFQDL+RVARELGES+TDEELQEMIDEADRDGDGL++EE+FMRIMKK++LF
Sbjct:    2 SYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRLAAAA-DDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
The following BLAST results are available for this feature:
BLAST of NO08G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26578.16.000e-6177.78centrin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01550NO08G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01550.1NO08G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01550.1.cds1NO08G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01550.1.cds2NO08G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01550.1 ID=NO08G01550.1|Name=NO08G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp
CTCAGGGCAGTAGTGATTGACTGTGTCGTCCAGTGGGTATGTTTAAGTAT
CGTCCAGTGGGTATGTTTTTGCGTAGAGCAACGGTGGGGTGCGCCAACGA
CGCAAGCAAATGTGCCCGAAGACATACAGCCTGGACAAGCACGAATGAGA
TAAAGGCAAGTCTCCTCAGGTAGAGACAACAAACACGTATGCATTTACAC
AATAGCCAAATGCCACTTTCACTTCCAGGAGCCTAGACTGCTCGTGCATG
CACGATCGCTCTTTTCTTCTCTTCTTTTCCGAAAGAGTCTGCGTTTCTCA
ACGAGAACACACCACTTGACAAATGTTTCGTCCTTCGCACCCTCTTTTTT
TCCCATATCCCCTTCCAGACTGCACTCGTGGCAAGGTAGGAATAGCATGC
AATACATAAACCACCGCATGCAGGAGTCAAAGGCAGAAAAAAAAACTCAT
GACCTCTGCGTCATCCCGTCATGCTCATCATCACCCTCCCCACCCCTTCG
CAGGCATACCGCAGAACAAGCAACAGCAACAGTCACGCTCTATACCAGCC
CAGTCTTACTTTCACACAAGAAGCTTCTCGACATCTTGAAATGGCGTCGA
GCAAAGCTACCTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAG
CAGCGACAAGAAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCAC
GGGGCATATTGACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTT
TTGAGCCCAGAAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGAC
GGAGACGAAAGTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGC
AGTCAAACTGGGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTC
GATTATTTGATGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAG
CGAGTGGCCCGGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGA
GATGATTGATGAGGCGGACCGGGACGGCGACGGGCTCATCAACGAGGAGG
AATTTATGCGGATCATGAAGAAGTCAAGCTTGTTTTAAAAGTAGGAAGGA
AGGAGGGAGATGAGACGGTCGGCCCCCAAGGGGACGTTTGGACAGACAGC
GGGAAATCCATTTACAAACAGCATGTGTATATGTCTTTTCAATCAATAAA
GAAGAATGCTGATTCAGGGACC
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protein sequence of NO08G01550.1

>NO08G01550.1-protein ID=NO08G01550.1-protein|Name=NO08G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MLIITLPTPSQAYRRTSNSNSHALYQPSLTFTQEASRHLEMASSKATSSK
GKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEE
VARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGE
KGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMK
KSSLF*
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mRNA from alignment at chr8:485481..486936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01550.1 ID=NO08G01550.1|Name=NO08G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp|location=Sequence derived from alignment at chr8:485481..486936- (Nannochloropsis oceanica)
CTCAGGGCAGTAGTGATTGACTGTGTCGTCCAGTGGGTATGTTTAAGTAT
CGTCCAGTGGGTATGTTTTTGCGTAGAGCAACGGTGGGGTGCGCCAACGA
CGCAAGCAAATGTGCCCGAAGACATACAGCCTGGACAAGCACGAATGAGA
TAAAGGCAAGTCTCCTCAGGTAGAGACAACAAACACGTATGCATTTACAC
AATAGCCAAATGCCACTTTCACTTCCAGGAGCCTAGACTGCTCGTGCATG
CACGATCGCTCTTTTCTTCTCTTCTTTTCCGAAAGAGTCTGCGTTTCTCA
ACGAGAACACACCACTTGACAAATGTTTCGTCCTTCGCACCCTCTTTTTT
TCCCATATCCCCTTCCAGACTGCACTCGTGGCAAGGTAGGAATAGCATGC
AATACATAAACCACCGCATGCAGGAGTCAAAGGCAGAAAAAAAAACTCAT
GACCTCTGCGTCATCCCGTCATGCTCATCATCACCCTCCCCACCCCTTCG
CAGGCATACCGCAGAACAAGCAACAGCAACAGTCACGCTCTATACCAGCC
CAGTCTTACTTTCACACAAGAAGCTTCTCGACATCTTGAAATGGCGTCGA
GCAAAGCTACCTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAG
CAGCGACAAGAAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCAC
GGGGCATATTGACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTT
TTGAGCCCAGAAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGAC
GGAGACGAAAGTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGC
AGTCAAACTGGGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTC
GATTATTTGATGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAG
CGAGTGGCCCGGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGA
GATGATTGGTACGTTTGAAGGGAAGGATGGGAGAAAGTTGGGGTATGAAC
GGATTTTTTGTAAAAGCGCTAGGTAGGGTTCGAGGAACATACATGAATTT
TCCTTTTCGACGAATGAAATTAAGCATGGCTTTGTGATGAATGAGAGAGG
AGAGGAATGACATTTCTATCTTCATTTTACTTCATACATTTTCTTACCTT
TTTCTTCCCCTCCTGTTTTTCCTTTCCCTTTTCTCTTACCAGATGAGGCG
GACCGGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATGCGGATCAT
GAAGAAGTCAAGCTTGTTTTAAAAGTAGGAAGGAAGGAGGGAGATGAGAC
GGTCGGCCCCCAAGGGGACGTTTGGACAGACAGCGGGAAATCCATTTACA
AACAGCATGTGTATATGTCTTTTCAATCAATAAAGAAGAATGCTGATTCA
GGGACC
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Coding sequence (CDS) from alignment at chr8:485481..486936-

>NO08G01550.1 ID=NO08G01550.1|Name=NO08G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr8:485481..486936- (Nannochloropsis oceanica)
ATGCTCATCATCACCCTCCCCACCCCTTCGCAGGCATACCGCAGAACAAG
CAACAGCAACAGTCACGCTCTATACCAGCCCAGTCTTACTTTCACACAAG
AAGCTTCTCGACATCTTGAAATGGCGTCGAGCAAAGCTACCTCCAGCAAA
GGCAAAGCCATTCAAGCCCTGAGTGAAGAGCAGCGACAAGAAATTAAGGA
GGCTTTTGACTTATTTGACACAGAGGGCACGGGGCATATTGACAGCAAGG
AATTGCGCATAGCCATGCGCGCCTTAGGTTTTGAGCCCAGAAAGGAGGAG
GTCGCCCGGTTGGTGGCATCGGCAGTGGACGGAGACGAAAGTGGCAGCAT
CTCATACAAACATTTTGTGGAAATTATGGCAGTCAAACTGGGAGAGAAGG
ACGGTCGAGAGGAGATGGCCAAGGCCTTTCGATTATTTGATGCGGGCGAG
AAGGGCGTGATAAGTTTTCAGGATTTGAAGCGAGTGGCCCGGGAATTGGG
CGAGTCAATGACGGACGAGGAGTTGCAGGAGATGATTGATGAGGCGGACC
GGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATGCGGATCATGAAG
AAGTCAAGCTTGTTTTAA
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Synonyms
Publications