NO08G01530.2, NO08G01530.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01530.2
Unique NameNO08G01530.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2018
Alignment locationchr8:479206..481599 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:479206..481599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01530.2 vs.
Match: GAQ84755.1 (hypothetical protein KFL_002040140 [Klebsormidium nitens])

HSP 1 Score: 135.2 bits (339), Expect = 3.200e-28
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 0 
Query:   85 LGSNHVWDFEEDAYNSTRCTIHTFDCTVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGH-SYVTLLKADIEGFEFDLFNEILTVDEVE-LPEQISFELHYRTIISELPWMPRQKTAGEIALLGTRLYEQGYRVLSREDNVLCPHCTEITIARFRC 251
            LGSN+ + FE+    +T+C + TFDCTV+   +P+ I DR TFH+IC+G+++ +     FM++ +V  +LG  S   L K DIEG E+D+F ++L  +    LP Q+S ELH+           R+KT  ++A+L   LY+ GYRV+SREDNVLC  CTE+T  R  C
Sbjct:  175 LGSNNDFSFEDSIAKTTKCHLQTFDCTVRQPRVPDDISDRVTFHQICLGTAKETKGELEFMSIVDVAALLGQTSPPNLFKMDIEGGEWDVFQDLLRSESAHLLPYQLSLELHW-------CMSGRRKTVADVAMLMHLLYDVGYRVISREDNVLCECCTELTFIRAFC 335
The following BLAST results are available for this feature:
BLAST of NO08G01530.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAQ84755.13.200e-2842.86hypothetical protein KFL_002040140 [Klebsormidium ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01530NO08G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01530.2NO08G01530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01530.2.cds1NO08G01530.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01530.2.cds2NO08G01530.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01530.2.cds3NO08G01530.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01530.2 ID=NO08G01530.2|Name=NO08G01530.2|organism=Nannochloropsis oceanica|type=mRNA|length=2018bp
GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC
CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT
ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG
TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA
GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC
GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA
GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA
CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC
CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG
GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT
TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA
GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG
AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT
ACGTGACGTTACTCAAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTTC
AACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGTT
CGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGGC
AAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCAG
GGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTTGTGTCCGCATTGTAC
GGAAATCACCATCGCGCGTTTCCGCTGCCCGAAAGGGCCCCGCAGCCAGA
CCAAGAAGCTAGCCTTGAGGATGCAGGAACGTCAGAGAGGCGCGGTGTCC
TATTTACAAGAGCAGCAACAGTAAGGATGATGAGGTGAATGAGACAGGGG
CTACAGGATGACGGAAAATTACGAAAAGGAAGGGACCGGGCTGTCTGATA
AAGTGTTTGCGGTGTGAGGGCGATATGCATGTGGCCGGGGGCTGAAGCGT
TGGTGGAATATTACGAAAGGGAAGGGGCCGAAATATCTAATAGAATTTTC
TGGTTGGAAGATCACCATCAATAAATGAGGGAGGTGCACGGAGTAGCGAT
GATATCGGGGGTGGGGAGGACGGGAGAAGGGATGTTGGCGAGTGAGAATT
GTTCTTAACAAAGAGCTGGTCTTGGAAACCATATGGAATAAAACGTTGAT
TAAGACGTATGTACCTAT
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protein sequence of NO08G01530.2

>NO08G01530.2-protein ID=NO08G01530.2-protein|Name=NO08G01530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MVGSLFVVFKTSPTIRIGLALSTPLVCNLQDDFGRVSNSKKLIVIFDFLS
FERWCCWTSLKDKQLVLSVTRHRPPGIYFSDFLYLGSNHVWDFEEDAYNS
TRCTIHTFDCTVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEV
MDMLGHSYVTLLKADIEGFEFDLFNEILTVDEVELPEQISFELHYRTIIS
ELPWMPRQKTAGEIALLGTRLYEQGYRVLSREDNVLCPHCTEITIARFRC
PKGPRSQTKKLALRMQERQRGAVSYLQEQQQ*
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mRNA from alignment at chr8:479206..481599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01530.2 ID=NO08G01530.2|Name=NO08G01530.2|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica)
GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC
CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT
ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG
TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA
GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC
GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA
GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA
CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC
CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG
GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT
TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA
GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG
AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT
ACGTGACGTTACTCAAGGTAAGGAGAAAGTGACGGATGGAAGGAGAGAAA
AGAGACAGAACTTTTGCATTTGCATGTGTTTTCTAATGAATGTGCCCACT
CATTCATTATTCCATTTTCTCACCTTCCCTCTCCCTCCCGCCCCCCGCAC
ACACACATCCATTATCAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTT
CAACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGT
TCGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGG
CAAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCA
GGGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAAT
CGAGAATGAAGGTGGCTACGTTATGATTGTTTTTCCCCTTAAAGAGTTTT
GGTAATGAAAGGATTGTATGGAGTTTGCTTTCTCCATCAACGGAAATGTC
TCCGGCATGCTTTCTCCCACCCCCCTTTCTTTCCCTCCCTGGAAATATCA
AGGACATGTCTAAGTTTGCCATAATGTAATTGCACCTTCCCCACTGCCTT
GTGCACAGGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCG
CTGCCCGAAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGC
AGGAACGTCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAA
GGATGATGAGGTGAATGAGACAGGGGCTACAGGATGACGGAAAATTACGA
AAAGGAAGGGACCGGGCTGTCTGATAAAGTGTTTGCGGTGTGAGGGCGAT
ATGCATGTGGCCGGGGGCTGAAGCGTTGGTGGAATATTACGAAAGGGAAG
GGGCCGAAATATCTAATAGAATTTTCTGGTTGGAAGATCACCATCAATAA
ATGAGGGAGGTGCACGGAGTAGCGATGATATCGGGGGTGGGGAGGACGGG
AGAAGGGATGTTGGCGAGTGAGAATTGTTCTTAACAAAGAGCTGGTCTTG
GAAACCATATGGAATAAAACGTTGATTAAGACGTATGTACCTAT
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Coding sequence (CDS) from alignment at chr8:479206..481599-

>NO08G01530.2 ID=NO08G01530.2|Name=NO08G01530.2|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica)
ATGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAATAAGGAT
CGGCCTTGCATTATCTACTCCATTGGTATGTAACCTGCAAGATGATTTCG
GAAGAGTCAGCAACAGTAAGAAGCTTATCGTTATCTTTGACTTTCTCAGT
TTTGAACGGTGGTGTTGTTGGACGAGCTTAAAAGACAAGCAACTCGTTCT
ATCAGTAACACGCCATCGACCCCCCGGTATCTATTTCTCCGATTTCCTCT
ATTTAGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTACAACTCC
ACCCGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAAACTCCAT
GCCGGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGTATGGGCA
GTTCCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAAGGAGGTA
ATGGATATGCTGGGTCACTCGTACGTGACGTTACTCAAGGCCGACATCGA
GGGCTTCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAGTAG
AGCTTCCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATTAGT
GAATTGCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTTGTT
GGGCACGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGGATA
ATGTGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCGCTGC
CCGAAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGCAGGA
ACGTCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAA
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Synonyms
Publications