NO08G01530.1, NO08G01530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01530.1
Unique Name	NO08G01530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1837
Alignment location	chr8:479206..481599 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:479206..481599 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G01530.1 vs.
Match: GAQ84755.1 (hypothetical protein KFL_002040140 [Klebsormidium nitens])

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-35
Identity = 89/224 (39.73%), Postives = 132/224 (58.93%), Query Frame = 0

Query:  122 EPLNWNRFDVMMPPVEGACEMQRIG---LKDGDGGKFVCGIQDIPDNKDRPCIIYSIGSNHVWDFEEDAYNSTRCTIHTFDCTVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGH-SYVTLLKADIEGFEFDLFNEILTVDEVE-LPEQISFELHYRTIISELPWMPRQKTAGEIALLGTRLYEQGYRVLSREDNVLCPHCTEITIARFRC 341
            EP    RF+ +        E++R+G      GDGGK +CGI  I   +   C ++S+GSN+ + FE+    +T+C + TFDCTV+   +P+ I DR TFH+IC+G+++ +     FM++ +V  +LG  S   L K DIEG E+D+F ++L  +    LP Q+S ELH+           R+KT  ++A+L   LY+ GYRV+SREDNVLC  CTE+T  R  C
Sbjct:  120 EPGGHKRFNSVHLWEAKCLEIERMGGVEAVSGDGGKLLCGIDRIMGTQP-DCTVFSLGSNNDFSFEDSIAKTTKCHLQTFDCTVRQPRVPDDISDRVTFHQICLGTAKETKGELEFMSIVDVAALLGQTSPPNLFKMDIEGGEWDVFQDLLRSESAHLLPYQLSLELHW-------CMSGRRKTVADVAMLMHLLYDVGYRVISREDNVLCECCTELTFIRAFC 335

The following BLAST results are available for this feature:

BLAST of NO08G01530.1 vs.

BLAST of NO08G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAQ84755.1	1.600e-35	39.73	hypothetical protein KFL_002040140 [Klebsormidium ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G01530	NO08G01530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01530.1	NO08G01530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01530.1.cds1	NO08G01530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01530.1.cds2	NO08G01530.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01530.1.cds3	NO08G01530.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01530.1.cds4	NO08G01530.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:479206..481599-
coding sequence from alignment at chr8:479206..481599-

mRNA sequence

>NO08G01530.1 ID=NO08G01530.1|Name=NO08G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp
GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC
CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT
ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG
TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA
GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC
GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTACAACTCCACC
CGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAAACTCCATGCC
GGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGTATGGGCAGTT
CCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAAGGAGGTAATG
GATATGCTGGGTCACTCGTACGTGACGTTACTCAAGGCCGACATCGAGGG
CTTCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAGTAGAGC
TTCCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATTAGTGAA
TTGCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTTGTTGGG
CACGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGGATAATG
TGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCGCTGCCCG
AAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGCAGGAACG
TCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAAGGATGAT
GAGGTGAATGAGACAGGGGCTACAGGATGACGGAAAATTACGAAAAGGAA
GGGACCGGGCTGTCTGATAAAGTGTTTGCGGTGTGAGGGCGATATGCATG
TGGCCGGGGGCTGAAGCGTTGGTGGAATATTACGAAAGGGAAGGGGCCGA
AATATCTAATAGAATTTTCTGGTTGGAAGATCACCATCAATAAATGAGGG
AGGTGCACGGAGTAGCGATGATATCGGGGGTGGGGAGGACGGGAGAAGGG
ATGTTGGCGAGTGAGAATTGTTCTTAACAAAGAGCTGGTCTTGGAAACCA
TATGGAATAAAACGTTGATTAAGACGTATGTACCTAT

protein sequence of NO08G01530.1

>NO08G01530.1-protein ID=NO08G01530.1-protein|Name=NO08G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MVSYSAVRHVRGLKMAFSRSQALPFMIAGVAVGVCMHSMFKHDSAGGKKT
GGLLTSFMDLGEAAQYDDTCHNSWVLTHVNAEMQRIVEEKNAAWYDALPK
ILEGAYDKNTLTRAGNGGDPIEPLNWNRFDVMMPPVEGACEMQRIGLKDG
DGGKFVCGIQDIPDNKDRPCIIYSIGSNHVWDFEEDAYNSTRCTIHTFDC
TVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGHSYVT
LLKADIEGFEFDLFNEILTVDEVELPEQISFELHYRTIISELPWMPRQKT
AGEIALLGTRLYEQGYRVLSREDNVLCPHCTEITIARFRCPKGPRSQTKK
LALRMQERQRGAVSYLQEQQQ*

mRNA from alignment at chr8:479206..481599-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G01530.1 ID=NO08G01530.1|Name=NO08G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica)
GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC
CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT
ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG
TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA
GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC
GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA
GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA
CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC
CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG
GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT
TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA
GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG
AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT
ACGTGACGTTACTCAAGGTAAGGAGAAAGTGACGGATGGAAGGAGAGAAA
AGAGACAGAACTTTTGCATTTGCATGTGTTTTCTAATGAATGTGCCCACT
CATTCATTATTCCATTTTCTCACCTTCCCTCTCCCTCCCGCCCCCCGCAC
ACACACATCCATTATCAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTT
CAACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGT
TCGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGG
CAAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCA
GGGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAAT
CGAGAATGAAGGTGGCTACGTTATGATTGTTTTTCCCCTTAAAGAGTTTT
GGTAATGAAAGGATTGTATGGAGTTTGCTTTCTCCATCAACGGAAATGTC
TCCGGCATGCTTTCTCCCACCCCCCTTTCTTTCCCTCCCTGGAAATATCA
AGGACATGTCTAAGTTTGCCATAATGTAATTGCACCTTCCCCACTGCCTT
GTGCACAGGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCG
CTGCCCGAAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGC
AGGAACGTCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAA
GGATGATGAGGTGAATGAGACAGGGGCTACAGGATGACGGAAAATTACGA
AAAGGAAGGGACCGGGCTGTCTGATAAAGTGTTTGCGGTGTGAGGGCGAT
ATGCATGTGGCCGGGGGCTGAAGCGTTGGTGGAATATTACGAAAGGGAAG
GGGCCGAAATATCTAATAGAATTTTCTGGTTGGAAGATCACCATCAATAA
ATGAGGGAGGTGCACGGAGTAGCGATGATATCGGGGGTGGGGAGGACGGG
AGAAGGGATGTTGGCGAGTGAGAATTGTTCTTAACAAAGAGCTGGTCTTG
GAAACCATATGGAATAAAACGTTGATTAAGACGTATGTACCTAT

Coding sequence (CDS) from alignment at chr8:479206..481599-

>NO08G01530.1 ID=NO08G01530.1|Name=NO08G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica)
ATGGTCTCTTACAGTGCCGTCCGACATGTCCGTGGGTTAAAGATGGCATT
CTCACGGTCGCAAGCCCTGCCATTTATGATTGCTGGCGTCGCTGTGGGTG
TATGCATGCACTCCATGTTCAAGCACGACTCCGCCGGTGGTAAGAAGACT
GGTGGCCTTCTGACGTCGTTTATGGACCTTGGCGAGGCTGCGCAATATGA
TGACACTTGTCACAATTCCTGGGTGCTGACGCATGTCAATGCCGAAATGC
AACGAATTGTGGAGGAAAAGAACGCGGCCTGGTATGATGCCCTGCCCAAA
ATACTGGAGGGCGCGTATGACAAAAACACGCTGACTAGGGCAGGAAACGG
GGGCGACCCTATTGAACCCTTGAACTGGAACCGCTTCGACGTCATGATGC
CCCCGGTAGAGGGTGCGTGCGAAATGCAGAGGATCGGGCTTAAGGACGGG
GATGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAATAAGGA
TCGGCCTTGCATTATCTACTCCATTGGCTCCAATCACGTATGGGACTTCG
AGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCTTTGACTGT
ACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGAGCCACATT
TCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGGAAAAATAT
TTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGTACGTGACG
TTACTCAAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTTCAACGAGAT
CTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGTTCGAACTCC
ACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGGCAAAAGACC
GCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCAGGGCTATAG
AGTGCTGTCTCGCGAGGATAATGTGTTGTGTCCGCATTGTACGGAAATCA
CCATCGCGCGTTTCCGCTGCCCGAAAGGGCCCCGCAGCCAGACCAAGAAG
CTAGCCTTGAGGATGCAGGAACGTCAGAGAGGCGCGGTGTCCTATTTACA
AGAGCAGCAACAGTAA

Synonyms

Publications