NO08G00920.1, NO08G00920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00920.1
Unique Name	NO08G00920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2501
Alignment location	chr8:296745..299245 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:296745..299245 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00920.1 vs.
Match: EWM26572.1 (hypothetical protein Naga_100001g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 240.4 bits (612), Expect = 2.000e-59
Identity = 150/335 (44.78%), Postives = 197/335 (58.81%), Query Frame = 0

Query:    5 TSGHGRSPSNIAEHIQLVLDRETSHENLQYVKLQMDKELAEERRRIEDPDEFKRLSTFSIEDLQSRVAALQGLQAILRAFLRRVCENLVILGGKSEGDRGGGGRGGRGGASAGLLQQKQSYEALLAEAEALVGGYLCMTFIRALVKDDTDALFHFVPGLPMPF--VSSAAPG-EGEEDEH-----DLYGRDFDLVRSEILHDVWGLNEGNNRNDLLAHRAPLEALLGPWWKPLMVGRRGHGSSSSTSSSSTSTPPSRNLLSLNDAPWLPWKWLMARLRRESDGGEPSNSNSSSSSSSSSSSSSSFFDHVSTEVKELHLLTLYALTDALWSKAEGR 332
            +SG  RSP +IAE I+LVLD+ TSH  LQ +K+Q+  ++AEE RRIEDP+E  RL   S+ED+ +RVAAL  +QAILRAFL R+ ENL     +++ +       GR G +  LLQQ++ +EAL+AE++AL+GGY C+ F+R  V  D +   H V  L MPF  +S A+ G  G E E+       YG+DF  VR ++LH VWGL+E     DL  HRAPLE+LLG WW+PL  GRRG          S   PP   LLS+ DA W+PW+ L ARL R      P   +            + F    S E   L LLTLYAL DA W + +G+
Sbjct:    9 SSGLRRSPLDIAEQIRLVLDQGTSHAQLQAIKVQLQNDVAEECRRIEDPEEHNRLLMLSLEDVHARVAALHQVQAILRAFLLRIRENLSFWDDEADYE-------GREGGATALLQQQEGFEALVAESKALIGGYSCLLFVRRFVDGDDNIWHHTVDSLSMPFLPLSHASGGVRGREGEYFAGPDHRYGQDFATVRGQVLHHVWGLDE-TTPEDLPRHRAPLESLLGAWWRPLTPGRRGR---------SGRHPPPCRLLSVKDALWVPWRVLTARLLR-----GPETEDEEDMGLLDPGRKAGFLARASAEASHLQLLTLYALVDACWVRDKGQ 321

The following BLAST results are available for this feature:

BLAST of NO08G00920.1 vs.

BLAST of NO08G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26572.1	2.000e-59	44.78	hypothetical protein Naga_100001g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00920	NO08G00920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00920.1	NO08G00920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00920.1.cds1	NO08G00920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:296745..299245-
coding sequence from alignment at chr8:296745..299245-

mRNA sequence

>NO08G00920.1 ID=NO08G00920.1|Name=NO08G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2501bp
ACAGTATATTCGACGCAAAGGAGGCACTGCCGGGATTGCAACACCACAGG
ATATCGAACAGTCTGCATTTTCCCTGCCTGTCTCCCCTACCACCGTCATC
ATCAGCGCCTGCGACTGCCTTGATCATGGCCCCTCCCACCTCTGGCCACG
GCCGCTCCCCCAGCAACATCGCCGAGCACATTCAGCTCGTCCTGGACCGG
GAGACAAGTCACGAAAATCTACAATATGTGAAATTGCAAATGGACAAAGA
GCTGGCCGAGGAGCGCCGTCGCATCGAAGACCCCGACGAATTCAAGCGAT
TGTCCACCTTTTCCATTGAGGACTTGCAATCACGTGTGGCAGCCTTGCAA
GGTTTACAAGCCATTTTGAGGGCTTTCCTGCGGAGGGTGTGTGAGAATTT
AGTTATTTTAGGGGGGAAGAGTGAGGGAGACCGAGGAGGTGGAGGAAGAG
GTGGAAGAGGAGGGGCGTCGGCAGGTTTGCTGCAACAAAAACAGTCGTAC
GAGGCCCTCTTGGCGGAGGCAGAGGCGTTAGTGGGTGGATATTTGTGTAT
GACGTTTATCCGTGCACTCGTGAAAGATGATACGGACGCTTTATTCCATT
TCGTGCCGGGTTTGCCCATGCCTTTTGTCTCTTCCGCAGCACCAGGAGAA
GGAGAGGAGGACGAGCATGACCTTTACGGCCGCGATTTTGACCTAGTGCG
CTCTGAGATTCTTCACGATGTATGGGGGTTGAACGAGGGCAACAACCGCA
ACGATTTGCTTGCGCACCGTGCCCCCTTGGAAGCTCTTCTTGGCCCGTGG
TGGAAGCCACTGATGGTCGGTCGGCGGGGCCATGGCAGTAGCAGCAGCAC
CAGCAGTAGCAGCACCAGCACCCCCCCTTCAAGAAACCTGCTATCTCTTA
ATGACGCACCGTGGCTGCCATGGAAGTGGCTGATGGCCCGTTTGCGTCGA
GAATCCGACGGGGGGGAGCCGAGCAACAGCAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTTTTTTTGACCATGTTTCCACTGAAG
TAAAGGAACTCCACCTCCTCACCCTCTATGCATTGACAGATGCCTTGTGG
TCCAAAGCAGAAGGACGGGTGGCTATCTCCACGTTACGCACGCGGTTGGC
CGAGCCTTTCGCTGCTTACATTGGCTTGCCCCGTTCCCTTGCTCTTGCTG
CTTTGGCGTACTGGTGCGCCGATCACCCACATAGGAGTGGGGCGGACGAC
TTGGCGTTAGCTATAGGAGGGGGCAAGGGCGGTGTGGTGGCGATGGTGCT
GGGGAAGGAAGGAGGGGAGAGACGGTACCGGCAGCTGGTCTGGATGTTGG
GGTACTGGGGAAGGTACGAAGAAGCAGCACACTTGATGGCAGTGGCCCCT
CCTCCTCGCCTGACCCCCCTTGATGGCTGCCTTTTCGTCGGCGTCTTGCT
TGGACTAGGGCAGTGGGAGCAGGCGTTTGCCCGGCAGCGTGCCCTCGCCC
TCCCTCCCTCCGGCCCCCTGTCTTCCCTCCCCCCTCAGAGGAGACTGGCT
CCACTGCAGCTCTTGGCCTACAGGCTCGTGGAGAGTGGGAGGGTGGGGTG
GTTGTCGTCTCTTCCCTTCTCTCCGTTTGAGGAGCAGCATGTCGTGTCAA
CGCTGTATTTGTCAAATTTGCCGACGCGGGACGCGGCGGTGCTGGCGTTT
TTGTTGAGGAGGAAACAATTTGGGCGGGCGTGGGCCGTATTCCACTTGGT
GGCGATTGGGGAGGAAGGGGAGGAAGGGGAGGGAGGGAGAGAAGGACGGG
AAGGATTGATGAAAGCAGATTTGGCGAGGTTGGTGCAGAGTGTAGAGAGG
TTCATTCCGAAGGAAGAGCTGGAGGCAATGAGGAGGGCGAGGGGGGAGGG
GGCTCGGAGGGGGGGAGGGGGAGGAGAGGACGCGGCTTTGCTGGAAAGGT
TTGCAAGGTTAAATCCTCTGGAAGGGGGCGATGGAGAGGGGAAGGAGGAG
GAAGTGATGCAGGAAGAGGAGGGAGGAGAGCAAGAGCCACTTGGAAGACG
AAGCTACAGGCAAGGACCTGTTGTCCCTGGACGTCGTGGTGGTTTGGGAT
GGAGCCGAGGCTTAGGGGATGGCTTGGGTGTTGATATATCTGGTTCTCCT
GTGTCTACTGGTTTCGAAGCGGCGGCGGCTGCTGCTGCTGCTGGTAGTGG
TCGTAGTAGTGGCAGAGGGCAGGTAGAGATGATGGGGATGGACACACGAG
CGTTTGTCGGGCCGTCGGGACATGAGAGGGAGTGGAGCAGTAGGATGGAC
ATGGGAGTAGATGGAGGTGAAGGGAAGGTAGGGAGAGGAAAGTTGCGTTC
ACCGCCGGTGGCGTTGCGGCCGGGGCGTACGGAACGGTTCGATACATATG
GTGCAGGTGAGAAACGGGGAGGTAGCGGCGTCGGCGATGGTGGTTATGGT
AAAGGCATTTCAAAGCCTCTAGGCGGGAGGCGGGAAGAGGAGCTGATATG
A

protein sequence of NO08G00920.1

>NO08G00920.1-protein ID=NO08G00920.1-protein|Name=NO08G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=792bp
MAPPTSGHGRSPSNIAEHIQLVLDRETSHENLQYVKLQMDKELAEERRRI
EDPDEFKRLSTFSIEDLQSRVAALQGLQAILRAFLRRVCENLVILGGKSE
GDRGGGGRGGRGGASAGLLQQKQSYEALLAEAEALVGGYLCMTFIRALVK
DDTDALFHFVPGLPMPFVSSAAPGEGEEDEHDLYGRDFDLVRSEILHDVW
GLNEGNNRNDLLAHRAPLEALLGPWWKPLMVGRRGHGSSSSTSSSSTSTP
PSRNLLSLNDAPWLPWKWLMARLRRESDGGEPSNSNSSSSSSSSSSSSSS
FFDHVSTEVKELHLLTLYALTDALWSKAEGRVAISTLRTRLAEPFAAYIG
LPRSLALAALAYWCADHPHRSGADDLALAIGGGKGGVVAMVLGKEGGERR
YRQLVWMLGYWGRYEEAAHLMAVAPPPRLTPLDGCLFVGVLLGLGQWEQA
FARQRALALPPSGPLSSLPPQRRLAPLQLLAYRLVESGRVGWLSSLPFSP
FEEQHVVSTLYLSNLPTRDAAVLAFLLRRKQFGRAWAVFHLVAIGEEGEE
GEGGREGREGLMKADLARLVQSVERFIPKEELEAMRRARGEGARRGGGGG
EDAALLERFARLNPLEGGDGEGKEEEVMQEEEGGEQEPLGRRSYRQGPVV
PGRRGGLGWSRGLGDGLGVDISGSPVSTGFEAAAAAAAAGSGRSSGRGQV
EMMGMDTRAFVGPSGHEREWSSRMDMGVDGGEGKVGRGKLRSPPVALRPG
RTERFDTYGAGEKRGGSGVGDGGYGKGISKPLGGRREEELI*

mRNA from alignment at chr8:296745..299245-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00920.1 ID=NO08G00920.1|Name=NO08G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2501bp|location=Sequence derived from alignment at chr8:296745..299245- (Nannochloropsis oceanica)
ACAGTATATTCGACGCAAAGGAGGCACTGCCGGGATTGCAACACCACAGG
ATATCGAACAGTCTGCATTTTCCCTGCCTGTCTCCCCTACCACCGTCATC
ATCAGCGCCTGCGACTGCCTTGATCATGGCCCCTCCCACCTCTGGCCACG
GCCGCTCCCCCAGCAACATCGCCGAGCACATTCAGCTCGTCCTGGACCGG
GAGACAAGTCACGAAAATCTACAATATGTGAAATTGCAAATGGACAAAGA
GCTGGCCGAGGAGCGCCGTCGCATCGAAGACCCCGACGAATTCAAGCGAT
TGTCCACCTTTTCCATTGAGGACTTGCAATCACGTGTGGCAGCCTTGCAA
GGTTTACAAGCCATTTTGAGGGCTTTCCTGCGGAGGGTGTGTGAGAATTT
AGTTATTTTAGGGGGGAAGAGTGAGGGAGACCGAGGAGGTGGAGGAAGAG
GTGGAAGAGGAGGGGCGTCGGCAGGTTTGCTGCAACAAAAACAGTCGTAC
GAGGCCCTCTTGGCGGAGGCAGAGGCGTTAGTGGGTGGATATTTGTGTAT
GACGTTTATCCGTGCACTCGTGAAAGATGATACGGACGCTTTATTCCATT
TCGTGCCGGGTTTGCCCATGCCTTTTGTCTCTTCCGCAGCACCAGGAGAA
GGAGAGGAGGACGAGCATGACCTTTACGGCCGCGATTTTGACCTAGTGCG
CTCTGAGATTCTTCACGATGTATGGGGGTTGAACGAGGGCAACAACCGCA
ACGATTTGCTTGCGCACCGTGCCCCCTTGGAAGCTCTTCTTGGCCCGTGG
TGGAAGCCACTGATGGTCGGTCGGCGGGGCCATGGCAGTAGCAGCAGCAC
CAGCAGTAGCAGCACCAGCACCCCCCCTTCAAGAAACCTGCTATCTCTTA
ATGACGCACCGTGGCTGCCATGGAAGTGGCTGATGGCCCGTTTGCGTCGA
GAATCCGACGGGGGGGAGCCGAGCAACAGCAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTTTTTTTGACCATGTTTCCACTGAAG
TAAAGGAACTCCACCTCCTCACCCTCTATGCATTGACAGATGCCTTGTGG
TCCAAAGCAGAAGGACGGGTGGCTATCTCCACGTTACGCACGCGGTTGGC
CGAGCCTTTCGCTGCTTACATTGGCTTGCCCCGTTCCCTTGCTCTTGCTG
CTTTGGCGTACTGGTGCGCCGATCACCCACATAGGAGTGGGGCGGACGAC
TTGGCGTTAGCTATAGGAGGGGGCAAGGGCGGTGTGGTGGCGATGGTGCT
GGGGAAGGAAGGAGGGGAGAGACGGTACCGGCAGCTGGTCTGGATGTTGG
GGTACTGGGGAAGGTACGAAGAAGCAGCACACTTGATGGCAGTGGCCCCT
CCTCCTCGCCTGACCCCCCTTGATGGCTGCCTTTTCGTCGGCGTCTTGCT
TGGACTAGGGCAGTGGGAGCAGGCGTTTGCCCGGCAGCGTGCCCTCGCCC
TCCCTCCCTCCGGCCCCCTGTCTTCCCTCCCCCCTCAGAGGAGACTGGCT
CCACTGCAGCTCTTGGCCTACAGGCTCGTGGAGAGTGGGAGGGTGGGGTG
GTTGTCGTCTCTTCCCTTCTCTCCGTTTGAGGAGCAGCATGTCGTGTCAA
CGCTGTATTTGTCAAATTTGCCGACGCGGGACGCGGCGGTGCTGGCGTTT
TTGTTGAGGAGGAAACAATTTGGGCGGGCGTGGGCCGTATTCCACTTGGT
GGCGATTGGGGAGGAAGGGGAGGAAGGGGAGGGAGGGAGAGAAGGACGGG
AAGGATTGATGAAAGCAGATTTGGCGAGGTTGGTGCAGAGTGTAGAGAGG
TTCATTCCGAAGGAAGAGCTGGAGGCAATGAGGAGGGCGAGGGGGGAGGG
GGCTCGGAGGGGGGGAGGGGGAGGAGAGGACGCGGCTTTGCTGGAAAGGT
TTGCAAGGTTAAATCCTCTGGAAGGGGGCGATGGAGAGGGGAAGGAGGAG
GAAGTGATGCAGGAAGAGGAGGGAGGAGAGCAAGAGCCACTTGGAAGACG
AAGCTACAGGCAAGGACCTGTTGTCCCTGGACGTCGTGGTGGTTTGGGAT
GGAGCCGAGGCTTAGGGGATGGCTTGGGTGTTGATATATCTGGTTCTCCT
GTGTCTACTGGTTTCGAAGCGGCGGCGGCTGCTGCTGCTGCTGGTAGTGG
TCGTAGTAGTGGCAGAGGGCAGGTAGAGATGATGGGGATGGACACACGAG
CGTTTGTCGGGCCGTCGGGACATGAGAGGGAGTGGAGCAGTAGGATGGAC
ATGGGAGTAGATGGAGGTGAAGGGAAGGTAGGGAGAGGAAAGTTGCGTTC
ACCGCCGGTGGCGTTGCGGCCGGGGCGTACGGAACGGTTCGATACATATG
GTGCAGGTGAGAAACGGGGAGGTAGCGGCGTCGGCGATGGTGGTTATGGT
AAAGGCATTTCAAAGCCTCTAGGCGGGAGGCGGGAAGAGGAGCTGATATG
A

Coding sequence (CDS) from alignment at chr8:296745..299245-

>NO08G00920.1 ID=NO08G00920.1|Name=NO08G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at chr8:296745..299245- (Nannochloropsis oceanica)
ATGGCCCCTCCCACCTCTGGCCACGGCCGCTCCCCCAGCAACATCGCCGA
GCACATTCAGCTCGTCCTGGACCGGGAGACAAGTCACGAAAATCTACAAT
ATGTGAAATTGCAAATGGACAAAGAGCTGGCCGAGGAGCGCCGTCGCATC
GAAGACCCCGACGAATTCAAGCGATTGTCCACCTTTTCCATTGAGGACTT
GCAATCACGTGTGGCAGCCTTGCAAGGTTTACAAGCCATTTTGAGGGCTT
TCCTGCGGAGGGTGTGTGAGAATTTAGTTATTTTAGGGGGGAAGAGTGAG
GGAGACCGAGGAGGTGGAGGAAGAGGTGGAAGAGGAGGGGCGTCGGCAGG
TTTGCTGCAACAAAAACAGTCGTACGAGGCCCTCTTGGCGGAGGCAGAGG
CGTTAGTGGGTGGATATTTGTGTATGACGTTTATCCGTGCACTCGTGAAA
GATGATACGGACGCTTTATTCCATTTCGTGCCGGGTTTGCCCATGCCTTT
TGTCTCTTCCGCAGCACCAGGAGAAGGAGAGGAGGACGAGCATGACCTTT
ACGGCCGCGATTTTGACCTAGTGCGCTCTGAGATTCTTCACGATGTATGG
GGGTTGAACGAGGGCAACAACCGCAACGATTTGCTTGCGCACCGTGCCCC
CTTGGAAGCTCTTCTTGGCCCGTGGTGGAAGCCACTGATGGTCGGTCGGC
GGGGCCATGGCAGTAGCAGCAGCACCAGCAGTAGCAGCACCAGCACCCCC
CCTTCAAGAAACCTGCTATCTCTTAATGACGCACCGTGGCTGCCATGGAA
GTGGCTGATGGCCCGTTTGCGTCGAGAATCCGACGGGGGGGAGCCGAGCA
ACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
TTTTTTGACCATGTTTCCACTGAAGTAAAGGAACTCCACCTCCTCACCCT
CTATGCATTGACAGATGCCTTGTGGTCCAAAGCAGAAGGACGGGTGGCTA
TCTCCACGTTACGCACGCGGTTGGCCGAGCCTTTCGCTGCTTACATTGGC
TTGCCCCGTTCCCTTGCTCTTGCTGCTTTGGCGTACTGGTGCGCCGATCA
CCCACATAGGAGTGGGGCGGACGACTTGGCGTTAGCTATAGGAGGGGGCA
AGGGCGGTGTGGTGGCGATGGTGCTGGGGAAGGAAGGAGGGGAGAGACGG
TACCGGCAGCTGGTCTGGATGTTGGGGTACTGGGGAAGGTACGAAGAAGC
AGCACACTTGATGGCAGTGGCCCCTCCTCCTCGCCTGACCCCCCTTGATG
GCTGCCTTTTCGTCGGCGTCTTGCTTGGACTAGGGCAGTGGGAGCAGGCG
TTTGCCCGGCAGCGTGCCCTCGCCCTCCCTCCCTCCGGCCCCCTGTCTTC
CCTCCCCCCTCAGAGGAGACTGGCTCCACTGCAGCTCTTGGCCTACAGGC
TCGTGGAGAGTGGGAGGGTGGGGTGGTTGTCGTCTCTTCCCTTCTCTCCG
TTTGAGGAGCAGCATGTCGTGTCAACGCTGTATTTGTCAAATTTGCCGAC
GCGGGACGCGGCGGTGCTGGCGTTTTTGTTGAGGAGGAAACAATTTGGGC
GGGCGTGGGCCGTATTCCACTTGGTGGCGATTGGGGAGGAAGGGGAGGAA
GGGGAGGGAGGGAGAGAAGGACGGGAAGGATTGATGAAAGCAGATTTGGC
GAGGTTGGTGCAGAGTGTAGAGAGGTTCATTCCGAAGGAAGAGCTGGAGG
CAATGAGGAGGGCGAGGGGGGAGGGGGCTCGGAGGGGGGGAGGGGGAGGA
GAGGACGCGGCTTTGCTGGAAAGGTTTGCAAGGTTAAATCCTCTGGAAGG
GGGCGATGGAGAGGGGAAGGAGGAGGAAGTGATGCAGGAAGAGGAGGGAG
GAGAGCAAGAGCCACTTGGAAGACGAAGCTACAGGCAAGGACCTGTTGTC
CCTGGACGTCGTGGTGGTTTGGGATGGAGCCGAGGCTTAGGGGATGGCTT
GGGTGTTGATATATCTGGTTCTCCTGTGTCTACTGGTTTCGAAGCGGCGG
CGGCTGCTGCTGCTGCTGGTAGTGGTCGTAGTAGTGGCAGAGGGCAGGTA
GAGATGATGGGGATGGACACACGAGCGTTTGTCGGGCCGTCGGGACATGA
GAGGGAGTGGAGCAGTAGGATGGACATGGGAGTAGATGGAGGTGAAGGGA
AGGTAGGGAGAGGAAAGTTGCGTTCACCGCCGGTGGCGTTGCGGCCGGGG
CGTACGGAACGGTTCGATACATATGGTGCAGGTGAGAAACGGGGAGGTAG
CGGCGTCGGCGATGGTGGTTATGGTAAAGGCATTTCAAAGCCTCTAGGCG
GGAGGCGGGAAGAGGAGCTGATATGA

Synonyms

Publications