NO08G00910.1, NO08G00910.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00910.1
Unique Name	NO08G00910.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2298
Alignment location	chr8:292309..294872 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:292309..294872 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00910.1 vs.
Match: EWM26570.1 (hypothetical protein Naga_100421g2 [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 7.700e-61
Identity = 133/213 (62.44%), Postives = 152/213 (71.36%), Query Frame = 0

Query:    9 MDVDGEYGCKMDEHSGPRLGAAPVRQQHPTQSAPPPLHSPLSATSPARLPLPPLSLKPLSRSISNPIITASK---RTPLVPRAPLRKGKWTPEEEVYAHYIIDNFNKGLISLTRGTTLRSYLSDRLNCDPMRVTKKFSGTSCIGKSVFCPCEPTPDNLDMTKVVSLRLLELEAAFRAKIDF----------NAPITTPA---SLPPSASLPPS 206
            M+VD  Y   ++E   P++            S  PP HSPLSA SP R PLPPL+LKPL+RS+SNP+ITAS    R  LVPR PLRKGKWTPEEE+YAHYIIDNFNKGLISLTRGTTLRSYLS+RLNCDPMRVTKKFSGTSCIGKS+FCPCE TPDNL+ +K VS RL ELEAAF++K+D            AP T P+     P    LPP+
Sbjct:    1 MNVDRGYTPTVEESVLPKMIKPIDASDSGQPSLSPPHHSPLSAASPTRFPLPPLTLKPLARSVSNPVITASSNAHRMSLVPRVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAFKSKVDAPSVFHLPRHPTAPPTQPSGRRQSPAGNGLPPA 213

The following BLAST results are available for this feature:

BLAST of NO08G00910.1 vs.

BLAST of NO08G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26570.1	7.700e-61	62.44	hypothetical protein Naga_100421g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00910	NO08G00910	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00910.1	NO08G00910.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00910.1.cds1	NO08G00910.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00910.1.cds2	NO08G00910.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:292309..294872-
coding sequence from alignment at chr8:292309..294872-

mRNA sequence

>NO08G00910.1 ID=NO08G00910.1|Name=NO08G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2298bp
ATGCCACTTTCAAGGCCTGGTGACATGGACGTCGATGGCGAATACGGCTG
CAAGATGGATGAGCACTCCGGTCCCCGCCTCGGTGCCGCTCCTGTCCGTC
AGCAACACCCTACCCAATCGGCCCCTCCACCACTCCACTCTCCCTTGTCG
GCGACCTCCCCCGCACGACTTCCCCTTCCACCTCTTTCTCTCAAGCCCTT
GTCACGTTCTATCTCCAATCCTATCATCACCGCCAGCAAGCGCACACCCC
TCGTACCACGGGCCCCGCTGCGCAAGGGCAAGTGGACGCCGGAGGAAGAA
GTATACGCGCATTACATCATCGACAATTTTAACAAGGGCTTGATAAGCTT
GACGCGAGGCACTACTCTCCGCTCCTACCTTTCCGACCGGCTCAATTGTG
ATCCTATGCGCGTCACCAAAAAGTTCTCTGGTACCTCCTGCATCGGAAAA
AGCGTCTTCTGTCCTTGTGAGCCAACTCCTGATAACCTTGACATGACCAA
GGTGGTCTCCCTCCGTCTCCTCGAGCTCGAGGCCGCCTTTCGCGCCAAAA
TCGACTTCAACGCCCCGATCACCACCCCTGCCTCCCTCCCGCCCTCTGCC
TCCCTCCCGCCCTCCCTCCATTCGATACATCAGCACCATAACTTGGCTCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGACACCCACATC
ACTTGCATCCTCCCCATGCGCACTGGCTACCTCATCCCCCCTCCCCTCCT
CTTCCCCCACCTCCTCCTGCTGCTGCTGCTGCGGCTGCTGCCGCCGCTGG
TGCTGCCCCTTACTCTCACGACAAGGACGACACCAAAAGCAGCAATGGCC
ATCTACACCTCAACGGCAAGGGAAGCAGCAGCGACAACAGCTCCAATCCC
AATAGCAGCAGCCGAGCACAGTCTCCTTCCACTGATGTTCTTCACGCCTC
GAGCATTACCACCACCACCACCCCCACCACCACCACCACCAACAGCAGCA
GCAGCTATAACAGCAGAAGCATACCTCCCCCTGCCGTCCACCACCACCAC
CACCTCGGCCCTTCTGCTCCTGGACTCCCTTACCCCCCTCCACCTCCTTC
CTCTACTCACCCCCTGCAATACCATGAGCAGCACCTGCGTCACCTGCCTC
ACTCCCACCATCCTCATTCCCTTGCATCCTTCTCCATGCCCTCACGTCAT
TCTGCCCCAGACCTGGCTCTTGCTGACTCCTCCTCTGAAGATGAAAATGA
TCAATACTTCCACCCCACTTTCTCCCCCACCCTCCTTCAATCTTCCTCTC
CTCGCTCTGGGAGAGGGAGCGCCAGAGGAGGAGGAGGGGGAGAAAGCGAG
GGCGGGAGGGAGGGAGGAGAACGTCGACGCTACACGAGTGGGAGACGACT
GGGGCATCGCCACGGACAATCTCAGTTGGACGGGATTGGAAAGAGAAGAA
GAGACCCCCTCAAGTTTTCTCCATCTCCTGCTGGTGCGGCTGCTACTTCT
CCAGGAGAAATCAGGGAGGCAGGGAGGGAGACCATGCCGGCTGTGACGGA
CGATCACGCCGCGGGGGATCTGCTTGTGAATTTCTTTGCGTCGGTTCACA
GAAATCACGGCACAGATTCCGACCAGGCAGAGGAGGACGAGGATGAGGGG
CAGGAGAAGATGGAGGCTATGGAGCACCAGGGGCAACAGGAGTGCCGTCC
CTCCTCCTCGTCCCCCCCCTCCTTCCCCACGTTAGGTGCTGCAGCATCCG
CAGCAGCGGGAGCAGCAGCAGGAGCTGTAGCAGCAGGAGCAGCAGCAGCA
GCGGCAGCAGAAGCAGCAGCAGCAGCAGCTGATGATGAAGCCTCCACGAC
GTCGTCTGGCGGCTCGGATCCTGGCACTGCTGCTGCTGCTGCTGCTGCTG
TCCCTACCCCCTCCTCCCCCTCGTCCTCCCTCACTTCCTCATCCTTGTCC
ATGTCTCCTTCCTCTACAGCAGCAGGTGTGACTGGTTCTGTTGAAGGCTT
GCTGCCGCGTGCTGTTGATGTCGTCACTGCCGCCGCTGCCGCTCCTCCGC
CGCCTGCTGCTGTTGCTGCTGCCGCCGCCCAGGCAGCCAGTGGTAGCATC
ACGAAGAAGGAAGGGATGAAAACGTGGGGGAAAGGAGGGGAGAAGGAAGA
AGCGGGAGGAGAGGGAGGGGAGAACTGCTGGTTAGTCTTCAAGAAAGAGG
AGGGAGGAAAAGAAGGCGAGGAAGGAGGGGTGGTAGGCCCGGGGGAAGGG
CCCGCTGATGCCGTAAAACGACAGAAGATATTTGGTTCAGGTTGCTAG

protein sequence of NO08G00910.1

>NO08G00910.1-protein ID=NO08G00910.1-protein|Name=NO08G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=766bp
MPLSRPGDMDVDGEYGCKMDEHSGPRLGAAPVRQQHPTQSAPPPLHSPLS
ATSPARLPLPPLSLKPLSRSISNPIITASKRTPLVPRAPLRKGKWTPEEE
VYAHYIIDNFNKGLISLTRGTTLRSYLSDRLNCDPMRVTKKFSGTSCIGK
SVFCPCEPTPDNLDMTKVVSLRLLELEAAFRAKIDFNAPITTPASLPPSA
SLPPSLHSIHQHHNLAQQQQQQQQQQQQQGHPHHLHPPHAHWLPHPPSPP
LPPPPPAAAAAAAAAAGAAPYSHDKDDTKSSNGHLHLNGKGSSSDNSSNP
NSSSRAQSPSTDVLHASSITTTTTPTTTTTNSSSSYNSRSIPPPAVHHHH
HLGPSAPGLPYPPPPPSSTHPLQYHEQHLRHLPHSHHPHSLASFSMPSRH
SAPDLALADSSSEDENDQYFHPTFSPTLLQSSSPRSGRGSARGGGGGESE
GGREGGERRRYTSGRRLGHRHGQSQLDGIGKRRRDPLKFSPSPAGAAATS
PGEIREAGRETMPAVTDDHAAGDLLVNFFASVHRNHGTDSDQAEEDEDEG
QEKMEAMEHQGQQECRPSSSSPPSFPTLGAAASAAAGAAAGAVAAGAAAA
AAAEAAAAAADDEASTTSSGGSDPGTAAAAAAAVPTPSSPSSSLTSSSLS
MSPSSTAAGVTGSVEGLLPRAVDVVTAAAAAPPPPAAVAAAAAQAASGSI
TKKEGMKTWGKGGEKEEAGGEGGENCWLVFKKEEGGKEGEEGGVVGPGEG
PADAVKRQKIFGSGC*

mRNA from alignment at chr8:292309..294872-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00910.1 ID=NO08G00910.1|Name=NO08G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2564bp|location=Sequence derived from alignment at chr8:292309..294872- (Nannochloropsis oceanica)
ATGCCACTTTCAAGGCCTGGTGACATGGACGTCGATGGCGAATACGGCTG
CAAGATGGATGAGCACTCCGGTCCCCGCCTCGGTGCCGCTCCTGTCCGTC
AGCAACACCCTACCCAATCGGCCCCTCCACCACTCCACTCTCCCTTGTCG
GCGACCTCCCCCGCACGACTTCCCCTTCCACCTCTTTCTCTCAAGCCCTT
GTCACGTTCTATCTCCAATCCTATCATCACCGCCAGCAAGCGCACACCCC
TCGTACCACGGGCCCCGCTGCGCAAGGGCAAGTGGACGCCGGAGGAAGAA
GTATACGCGCATTACATCATCGACAATTTTAACAAGGGCTTGATAAGCTT
GACGCGAGGTACGCCGGATATGCCAGGTCCATGGAAGGGATGCGCGTGGA
TGTATTGTCATTCCCTCCCTTATTCCTATTTTATTTACGCCTGTCACTGA
TATTTTATGCGTTGATTATCTCCGTTTTCCTCCACCCTCCTCTCCTAAGA
TCTCACCCTTTTAAGTCGTATGTCCGTCTCTGTCCAATTAAAGCACTTCT
ATTGCCAATCAGAAAACGCTGCACCTAAACCTCCATTCCCTGCCTCCCTC
CCTCCCTTGGTCTCCCTCTCCTAGGCACTACTCTCCGCTCCTACCTTTCC
GACCGGCTCAATTGTGATCCTATGCGCGTCACCAAAAAGTTCTCTGGTAC
CTCCTGCATCGGAAAAAGCGTCTTCTGTCCTTGTGAGCCAACTCCTGATA
ACCTTGACATGACCAAGGTGGTCTCCCTCCGTCTCCTCGAGCTCGAGGCC
GCCTTTCGCGCCAAAATCGACTTCAACGCCCCGATCACCACCCCTGCCTC
CCTCCCGCCCTCTGCCTCCCTCCCGCCCTCCCTCCATTCGATACATCAGC
ACCATAACTTGGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGGGACACCCACATCACTTGCATCCTCCCCATGCGCACTGGCTACCTCA
TCCCCCCTCCCCTCCTCTTCCCCCACCTCCTCCTGCTGCTGCTGCTGCGG
CTGCTGCCGCCGCTGGTGCTGCCCCTTACTCTCACGACAAGGACGACACC
AAAAGCAGCAATGGCCATCTACACCTCAACGGCAAGGGAAGCAGCAGCGA
CAACAGCTCCAATCCCAATAGCAGCAGCCGAGCACAGTCTCCTTCCACTG
ATGTTCTTCACGCCTCGAGCATTACCACCACCACCACCCCCACCACCACC
ACCACCAACAGCAGCAGCAGCTATAACAGCAGAAGCATACCTCCCCCTGC
CGTCCACCACCACCACCACCTCGGCCCTTCTGCTCCTGGACTCCCTTACC
CCCCTCCACCTCCTTCCTCTACTCACCCCCTGCAATACCATGAGCAGCAC
CTGCGTCACCTGCCTCACTCCCACCATCCTCATTCCCTTGCATCCTTCTC
CATGCCCTCACGTCATTCTGCCCCAGACCTGGCTCTTGCTGACTCCTCCT
CTGAAGATGAAAATGATCAATACTTCCACCCCACTTTCTCCCCCACCCTC
CTTCAATCTTCCTCTCCTCGCTCTGGGAGAGGGAGCGCCAGAGGAGGAGG
AGGGGGAGAAAGCGAGGGCGGGAGGGAGGGAGGAGAACGTCGACGCTACA
CGAGTGGGAGACGACTGGGGCATCGCCACGGACAATCTCAGTTGGACGGG
ATTGGAAAGAGAAGAAGAGACCCCCTCAAGTTTTCTCCATCTCCTGCTGG
TGCGGCTGCTACTTCTCCAGGAGAAATCAGGGAGGCAGGGAGGGAGACCA
TGCCGGCTGTGACGGACGATCACGCCGCGGGGGATCTGCTTGTGAATTTC
TTTGCGTCGGTTCACAGAAATCACGGCACAGATTCCGACCAGGCAGAGGA
GGACGAGGATGAGGGGCAGGAGAAGATGGAGGCTATGGAGCACCAGGGGC
AACAGGAGTGCCGTCCCTCCTCCTCGTCCCCCCCCTCCTTCCCCACGTTA
GGTGCTGCAGCATCCGCAGCAGCGGGAGCAGCAGCAGGAGCTGTAGCAGC
AGGAGCAGCAGCAGCAGCGGCAGCAGAAGCAGCAGCAGCAGCAGCTGATG
ATGAAGCCTCCACGACGTCGTCTGGCGGCTCGGATCCTGGCACTGCTGCT
GCTGCTGCTGCTGCTGTCCCTACCCCCTCCTCCCCCTCGTCCTCCCTCAC
TTCCTCATCCTTGTCCATGTCTCCTTCCTCTACAGCAGCAGGTGTGACTG
GTTCTGTTGAAGGCTTGCTGCCGCGTGCTGTTGATGTCGTCACTGCCGCC
GCTGCCGCTCCTCCGCCGCCTGCTGCTGTTGCTGCTGCCGCCGCCCAGGC
AGCCAGTGGTAGCATCACGAAGAAGGAAGGGATGAAAACGTGGGGGAAAG
GAGGGGAGAAGGAAGAAGCGGGAGGAGAGGGAGGGGAGAACTGCTGGTTA
GTCTTCAAGAAAGAGGAGGGAGGAAAAGAAGGCGAGGAAGGAGGGGTGGT
AGGCCCGGGGGAAGGGCCCGCTGATGCCGTAAAACGACAGAAGATATTTG
GTTCAGGTTGCTAG

Coding sequence (CDS) from alignment at chr8:292309..294872-

>NO08G00910.1 ID=NO08G00910.1|Name=NO08G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=2298bp|location=Sequence derived from alignment at chr8:292309..294872- (Nannochloropsis oceanica)
ATGCCACTTTCAAGGCCTGGTGACATGGACGTCGATGGCGAATACGGCTG
CAAGATGGATGAGCACTCCGGTCCCCGCCTCGGTGCCGCTCCTGTCCGTC
AGCAACACCCTACCCAATCGGCCCCTCCACCACTCCACTCTCCCTTGTCG
GCGACCTCCCCCGCACGACTTCCCCTTCCACCTCTTTCTCTCAAGCCCTT
GTCACGTTCTATCTCCAATCCTATCATCACCGCCAGCAAGCGCACACCCC
TCGTACCACGGGCCCCGCTGCGCAAGGGCAAGTGGACGCCGGAGGAAGAA
GTATACGCGCATTACATCATCGACAATTTTAACAAGGGCTTGATAAGCTT
GACGCGAGGCACTACTCTCCGCTCCTACCTTTCCGACCGGCTCAATTGTG
ATCCTATGCGCGTCACCAAAAAGTTCTCTGGTACCTCCTGCATCGGAAAA
AGCGTCTTCTGTCCTTGTGAGCCAACTCCTGATAACCTTGACATGACCAA
GGTGGTCTCCCTCCGTCTCCTCGAGCTCGAGGCCGCCTTTCGCGCCAAAA
TCGACTTCAACGCCCCGATCACCACCCCTGCCTCCCTCCCGCCCTCTGCC
TCCCTCCCGCCCTCCCTCCATTCGATACATCAGCACCATAACTTGGCTCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGACACCCACATC
ACTTGCATCCTCCCCATGCGCACTGGCTACCTCATCCCCCCTCCCCTCCT
CTTCCCCCACCTCCTCCTGCTGCTGCTGCTGCGGCTGCTGCCGCCGCTGG
TGCTGCCCCTTACTCTCACGACAAGGACGACACCAAAAGCAGCAATGGCC
ATCTACACCTCAACGGCAAGGGAAGCAGCAGCGACAACAGCTCCAATCCC
AATAGCAGCAGCCGAGCACAGTCTCCTTCCACTGATGTTCTTCACGCCTC
GAGCATTACCACCACCACCACCCCCACCACCACCACCACCAACAGCAGCA
GCAGCTATAACAGCAGAAGCATACCTCCCCCTGCCGTCCACCACCACCAC
CACCTCGGCCCTTCTGCTCCTGGACTCCCTTACCCCCCTCCACCTCCTTC
CTCTACTCACCCCCTGCAATACCATGAGCAGCACCTGCGTCACCTGCCTC
ACTCCCACCATCCTCATTCCCTTGCATCCTTCTCCATGCCCTCACGTCAT
TCTGCCCCAGACCTGGCTCTTGCTGACTCCTCCTCTGAAGATGAAAATGA
TCAATACTTCCACCCCACTTTCTCCCCCACCCTCCTTCAATCTTCCTCTC
CTCGCTCTGGGAGAGGGAGCGCCAGAGGAGGAGGAGGGGGAGAAAGCGAG
GGCGGGAGGGAGGGAGGAGAACGTCGACGCTACACGAGTGGGAGACGACT
GGGGCATCGCCACGGACAATCTCAGTTGGACGGGATTGGAAAGAGAAGAA
GAGACCCCCTCAAGTTTTCTCCATCTCCTGCTGGTGCGGCTGCTACTTCT
CCAGGAGAAATCAGGGAGGCAGGGAGGGAGACCATGCCGGCTGTGACGGA
CGATCACGCCGCGGGGGATCTGCTTGTGAATTTCTTTGCGTCGGTTCACA
GAAATCACGGCACAGATTCCGACCAGGCAGAGGAGGACGAGGATGAGGGG
CAGGAGAAGATGGAGGCTATGGAGCACCAGGGGCAACAGGAGTGCCGTCC
CTCCTCCTCGTCCCCCCCCTCCTTCCCCACGTTAGGTGCTGCAGCATCCG
CAGCAGCGGGAGCAGCAGCAGGAGCTGTAGCAGCAGGAGCAGCAGCAGCA
GCGGCAGCAGAAGCAGCAGCAGCAGCAGCTGATGATGAAGCCTCCACGAC
GTCGTCTGGCGGCTCGGATCCTGGCACTGCTGCTGCTGCTGCTGCTGCTG
TCCCTACCCCCTCCTCCCCCTCGTCCTCCCTCACTTCCTCATCCTTGTCC
ATGTCTCCTTCCTCTACAGCAGCAGGTGTGACTGGTTCTGTTGAAGGCTT
GCTGCCGCGTGCTGTTGATGTCGTCACTGCCGCCGCTGCCGCTCCTCCGC
CGCCTGCTGCTGTTGCTGCTGCCGCCGCCCAGGCAGCCAGTGGTAGCATC
ACGAAGAAGGAAGGGATGAAAACGTGGGGGAAAGGAGGGGAGAAGGAAGA
AGCGGGAGGAGAGGGAGGGGAGAACTGCTGGTTAGTCTTCAAGAAAGAGG
AGGGAGGAAAAGAAGGCGAGGAAGGAGGGGTGGTAGGCCCGGGGGAAGGG
CCCGCTGATGCCGTAAAACGACAGAAGATATTTGGTTCAGGTTGCTAG

Synonyms

Publications