NO08G00570.1, NO08G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00570.1
Unique NameNO08G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2620
Alignment locationchr8:207949..210756 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:207949..210756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00570.1 vs.
Match: EWM26546.1 (hypothetical protein Naga_100409g6 [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 2.100e-19
Identity = 81/177 (45.76%), Postives = 106/177 (59.89%), Query Frame = 0 
Query:   26 SVTALRGSMQRQFTDSSKALQASIQQKREHMRHEIAALRLTSGPSSKVSPFPSSSSLPPSSPSSSLPPSS-PSSSPVLPPSTSASPVVLEIQRSRGPHQSVAAMRDQWQGSSQKIETRAEALSRSIGEEEKYRRACTRAKELLSHPHLEAASLHL-------CQRGEHAFSSLPTSS 195
            SVTA    + RQ T+  K  QA+I  K +    ++ AL          +P PS    P S P+   PPS+ P +SP      ++SPV LEIQR RGP  SVA M+++W+GS QKIETRA+A++R   EEEKYR+AC+ AKE+L+HPHLEAA+L L         RG  +   LPTSS
Sbjct:   39 SVTAPPHDLHRQNTEPDKVTQAAILDKCDSTGRQLTALPQPDAVPDPTTPLPSFPPHPKSPPT--FPPSAGPDASPA-----ASSPVALEIQRCRGPSLSVAQMKERWRGSRQKIETRAQAMARWSEEEEKYRQACSEAKEMLTHPHLEAAALELYHQRLQGTYRGGLSGPRLPTSS 208
The following BLAST results are available for this feature:
BLAST of NO08G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26546.12.100e-1945.76hypothetical protein Naga_100409g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00570NO08G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00570.1NO08G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00570.1.cds1NO08G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00570.1.cds2NO08G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00570.1 ID=NO08G00570.1|Name=NO08G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2620bp
ATTCACAGGACGGAACAACCACCATGACCTCCTCCTCATAACCATAATCG
GAGATCCGGGGGCCATAGGGGCATTAGCGCAGCTACCGATACTACACTGT
GACCCTACGACAATCACAAGCAGTAGTAGCGCCACCGCATCACGAAACCG
GACATGAAGCCACCTGTTTCAATCCAGGCGGAGCGTGACAGGAATCGAGG
TATCACGGGCCATACGGACATCACCTCCTCCGTGACCGCCCTCCGGGGGA
GCATGCAACGCCAATTCACTGACTCCAGCAAAGCTCTCCAAGCCTCCATC
CAACAAAAACGCGAGCACATGCGCCACGAAATCGCCGCCCTTCGCCTCAC
CAGCGGCCCTTCTTCCAAAGTTTCCCCCTTCCCCTCTTCGTCCTCCCTCC
CTCCCTCCTCCCCTTCGTCCTCCCTCCCTCCCTCCTCCCCTTCCTCCTCC
CCCGTCCTTCCTCCTAGCACCAGCGCCAGTCCAGTCGTTCTAGAGATTCA
ACGTAGTCGTGGTCCACATCAATCTGTAGCTGCCATGAGAGACCAATGGC
AGGGCTCTTCGCAAAAGATCGAAACCCGGGCAGAGGCCCTCTCACGTTCG
ATAGGGGAGGAAGAAAAGTATCGGCGCGCCTGCACTCGAGCAAAAGAATT
GTTGTCCCATCCCCATCTAGAAGCAGCATCTCTTCACCTCTGCCAACGAG
GAGAGCATGCATTTTCCTCCCTTCCCACCTCCTCGTCGTTCCAGGGAGAG
AGCCACGAGGAGTTCCTGACGCGCTTTCGTTCCCCTTCCTTGACGTCCAC
CAAGGAAAAAGAGTTGTTGATTCAGGCGTGGGCGAGGGACAAGAAACAGC
TGCAGCAGCAAGGAGGAGGAGAAGGGATGCAGGCATGGAGGGAGTGGAGG
GTGGAGGAGGGCAAGATATTTTTAAGCGAGGTGCTAGGGGTTGGGGTAGG
AGGAGAGGAGGAGGAGGAAGGGGAGGGATGGTTGGCGATATTGGAAAGGG
CCGTAATGGCTGTGGAGGAGGAAGGAGCGAGGGAGGGAGGGGAGGAAGGA
GGAAGGGAGGGAGTGGAGGAAGGAGGGCATGGGCGGGAGGGGAAAGTGAT
GGTGCCGCCCAAGCGTTTGTTTGAAGACGAAGACGAAGACGAAGACGAAG
TGGAGGGGGAAGAGGAGGAGGGGGAGGAAAAGGAGGTAGTGATAGTAGAG
AAAGAGGAAGGAGGGAGGGCGGCGGAAATAACAGAGGAAAAGGTGCGGGA
GGGGGAGGAAGAAAGTGAGAAAGGACGGGAGGAAAGGGATAGGAAGGAGG
AAGCTCTTCCCTCGATCGACGCGGCATCTGATGAGGGGGAGATTGCAATG
AGGAAAATGAGCAAGCAGATGACAATGAACAGAGAAAGTGATGCAGCTGC
TGCTCCTGCCGAGGAAGGGGGGACAGGAGAGGAACCGTTGCAGCAGCATT
TGCAACCTCACGACGAGGCGGATGGGCTAGCAATAAAGTCAAGTACCCCC
CGCCCCCCCCGGCCCTCCCATTTCTCCACTTTTATCTCCTCCTCCTCTTC
ATCCTTCTCCTCCTCCTCCTCCTCCTCTCCTTCGTCTTCAAACAAACGCT
TGGGCGGCACCATCACTTTCCCCTCCCGCCTATGCCCTCCTTCCTCCCAT
CCCTCCCTCCCTCCTTCCTCCTCCGCGGAAATTCGCCGGCGCCACTTGAA
AGAGAAGGGATTTTGGCTCTCGCACAAGCTGCCTGCGTTGCCTTCAACCA
CCAGTCCCCTCCTTTCTCCTCCTCCTCCTTCTCCTCCTGCCCCTCCCGTG
ATGGAAACGGTCAGCAGTTGCGGCGTTCAGGACAGCAGAAGCGAGAAGAA
GATGGCTCGGACGCAAATTAAGGCGGATGGGGGAGCAGCAGGAGTGGCAG
GGGGATGGAGGGGTGTGGCAGCTGGCAGCACCCCTACCCACAGGAGGACG
AGGAGCAGGAGCAGCAGGAGCACCAGCAGCAGCAGCATTGGTGCAACCGC
TGCAAGCAAGGCCAAGGAGACAGGAAAGGTGTGTGTGTCGACGGCAGGCG
CGAAGAAGAATGTAAAAGAGATGTGGAGGTAAGAGTGCTTTTGCTTTACA
CACACGTATAATCGAGAGAGCGAGAGGGCCAGAGTGAGAGAGTGAAAAGT
AGAAAGAGGGAGGGAAGGAGGGAAAGAGGACCTCTGGCAATAGATGGGGG
AGCATGGTTAGGGGAACCTCGGAGGTTACTCGGGCGTGGACAGCAGAGAA
ATGGCCAAAGGATATTAAAATAGCGATGAACATCACACAACATTTATGCA
AAAAGACGAAGGAGAAATTCGCAGGGGAGATTGGGAGAGAGAACCAGCGA
GCTCGAGACAGACCTACACTAGTCAGAATCCGTGGACGAGAAACAGCAAA
ATGAAAGAGAGAGAAAAGAGAGGGCCAGTGTAGTGAGTACAAGCACAAGC
ACCTACAGGCCCATATGAACAGCGGCAGGGACAAGCATAGATACACTAGT
GTGGAAAAAATAAAATAATGATTTTAACAAAGAATAGGTAGAATTGCAGG
TAGGACATAGCAACAAAGAATAAAGGAGACAAGAGAGGGGAACGCCTGCC
ATTCGCGATGCGCACCGTCC
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protein sequence of NO08G00570.1

>NO08G00570.1-protein ID=NO08G00570.1-protein|Name=NO08G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MKPPVSIQAERDRNRGITGHTDITSSVTALRGSMQRQFTDSSKALQASIQ
QKREHMRHEIAALRLTSGPSSKVSPFPSSSSLPPSSPSSSLPPSSPSSSP
VLPPSTSASPVVLEIQRSRGPHQSVAAMRDQWQGSSQKIETRAEALSRSI
GEEEKYRRACTRAKELLSHPHLEAASLHLCQRGEHAFSSLPTSSSFQGES
HEEFLTRFRSPSLTSTKEKELLIQAWARDKKQLQQQGGGEGMQAWREWRV
EEGKIFLSEVLGVGVGGEEEEEGEGWLAILERAVMAVEEEGAREGGEEGG
REGVEEGGHGREGKVMVPPKRLFEDEDEDEDEVEGEEEEGEEKEVVIVEK
EEGGRAAEITEEKVREGEEESEKGREERDRKEEALPSIDAASDEGEIAMR
KMSKQMTMNRESDAAAAPAEEGGTGEEPLQQHLQPHDEADGLAIKSSTPR
PPRPSHFSTFISSSSSSFSSSSSSSPSSSNKRLGGTITFPSRLCPPSSHP
SLPPSSSAEIRRRHLKEKGFWLSHKLPALPSTTSPLLSPPPPSPPAPPVM
ETVSSCGVQDSRSEKKMARTQIKADGGAAGVAGGWRGVAAGSTPTHRRTR
SRSSRSTSSSSIGATAASKAKETGKVCVSTAGAKKNVKEMWR*
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mRNA from alignment at chr8:207949..210756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00570.1 ID=NO08G00570.1|Name=NO08G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2808bp|location=Sequence derived from alignment at chr8:207949..210756+ (Nannochloropsis oceanica)
ATTCACAGGACGGAACAACCACCATGACCTCCTCCTCATAACCATAATCG
GAGATCCGGGGGCCATAGGGGCATTAGCGCAGCTACCGATACTACACTGT
GACCCTACGACAATCACAAGCAGTAGTAGCGCCACCGCATCACGAAACCG
GACATGAAGCCACCTGTTTCAATCCAGGCGGAGCGTGACAGGAATCGAGG
TATCACGGGCCATGTACGTTCAAACCCGAAGGGGCATAGCATACTATGAA
AGCCATACAACGACCCGAAGGCCCTCAAGCCTACTCTCATTCTCTCTCCC
TAACCCGACATCTCCCCTTCTTTGCTCATTCGACCCCCACCCCTATCTCC
TCCTTTCCCTCACTCCCCCTGCCCATACCTCCCCCCTCTCTACTGCCTCA
GACGGACATCACCTCCTCCGTGACCGCCCTCCGGGGGAGCATGCAACGCC
AATTCACTGACTCCAGCAAAGCTCTCCAAGCCTCCATCCAACAAAAACGC
GAGCACATGCGCCACGAAATCGCCGCCCTTCGCCTCACCAGCGGCCCTTC
TTCCAAAGTTTCCCCCTTCCCCTCTTCGTCCTCCCTCCCTCCCTCCTCCC
CTTCGTCCTCCCTCCCTCCCTCCTCCCCTTCCTCCTCCCCCGTCCTTCCT
CCTAGCACCAGCGCCAGTCCAGTCGTTCTAGAGATTCAACGTAGTCGTGG
TCCACATCAATCTGTAGCTGCCATGAGAGACCAATGGCAGGGCTCTTCGC
AAAAGATCGAAACCCGGGCAGAGGCCCTCTCACGTTCGATAGGGGAGGAA
GAAAAGTATCGGCGCGCCTGCACTCGAGCAAAAGAATTGTTGTCCCATCC
CCATCTAGAAGCAGCATCTCTTCACCTCTGCCAACGAGGAGAGCATGCAT
TTTCCTCCCTTCCCACCTCCTCGTCGTTCCAGGGAGAGAGCCACGAGGAG
TTCCTGACGCGCTTTCGTTCCCCTTCCTTGACGTCCACCAAGGAAAAAGA
GTTGTTGATTCAGGCGTGGGCGAGGGACAAGAAACAGCTGCAGCAGCAAG
GAGGAGGAGAAGGGATGCAGGCATGGAGGGAGTGGAGGGTGGAGGAGGGC
AAGATATTTTTAAGCGAGGTGCTAGGGGTTGGGGTAGGAGGAGAGGAGGA
GGAGGAAGGGGAGGGATGGTTGGCGATATTGGAAAGGGCCGTAATGGCTG
TGGAGGAGGAAGGAGCGAGGGAGGGAGGGGAGGAAGGAGGAAGGGAGGGA
GTGGAGGAAGGAGGGCATGGGCGGGAGGGGAAAGTGATGGTGCCGCCCAA
GCGTTTGTTTGAAGACGAAGACGAAGACGAAGACGAAGTGGAGGGGGAAG
AGGAGGAGGGGGAGGAAAAGGAGGTAGTGATAGTAGAGAAAGAGGAAGGA
GGGAGGGCGGCGGAAATAACAGAGGAAAAGGTGCGGGAGGGGGAGGAAGA
AAGTGAGAAAGGACGGGAGGAAAGGGATAGGAAGGAGGAAGCTCTTCCCT
CGATCGACGCGGCATCTGATGAGGGGGAGATTGCAATGAGGAAAATGAGC
AAGCAGATGACAATGAACAGAGAAAGTGATGCAGCTGCTGCTCCTGCCGA
GGAAGGGGGGACAGGAGAGGAACCGTTGCAGCAGCATTTGCAACCTCACG
ACGAGGCGGATGGGCTAGCAATAAAGTCAAGTACCCCCCGCCCCCCCCGG
CCCTCCCATTTCTCCACTTTTATCTCCTCCTCCTCTTCATCCTTCTCCTC
CTCCTCCTCCTCCTCTCCTTCGTCTTCAAACAAACGCTTGGGCGGCACCA
TCACTTTCCCCTCCCGCCTATGCCCTCCTTCCTCCCATCCCTCCCTCCCT
CCTTCCTCCTCCGCGGAAATTCGCCGGCGCCACTTGAAAGAGAAGGGATT
TTGGCTCTCGCACAAGCTGCCTGCGTTGCCTTCAACCACCAGTCCCCTCC
TTTCTCCTCCTCCTCCTTCTCCTCCTGCCCCTCCCGTGATGGAAACGGTC
AGCAGTTGCGGCGTTCAGGACAGCAGAAGCGAGAAGAAGATGGCTCGGAC
GCAAATTAAGGCGGATGGGGGAGCAGCAGGAGTGGCAGGGGGATGGAGGG
GTGTGGCAGCTGGCAGCACCCCTACCCACAGGAGGACGAGGAGCAGGAGC
AGCAGGAGCACCAGCAGCAGCAGCATTGGTGCAACCGCTGCAAGCAAGGC
CAAGGAGACAGGAAAGGTGTGTGTGTCGACGGCAGGCGCGAAGAAGAATG
TAAAAGAGATGTGGAGGTAAGAGTGCTTTTGCTTTACACACACGTATAAT
CGAGAGAGCGAGAGGGCCAGAGTGAGAGAGTGAAAAGTAGAAAGAGGGAG
GGAAGGAGGGAAAGAGGACCTCTGGCAATAGATGGGGGAGCATGGTTAGG
GGAACCTCGGAGGTTACTCGGGCGTGGACAGCAGAGAAATGGCCAAAGGA
TATTAAAATAGCGATGAACATCACACAACATTTATGCAAAAAGACGAAGG
AGAAATTCGCAGGGGAGATTGGGAGAGAGAACCAGCGAGCTCGAGACAGA
CCTACACTAGTCAGAATCCGTGGACGAGAAACAGCAAAATGAAAGAGAGA
GAAAAGAGAGGGCCAGTGTAGTGAGTACAAGCACAAGCACCTACAGGCCC
ATATGAACAGCGGCAGGGACAAGCATAGATACACTAGTGTGGAAAAAATA
AAATAATGATTTTAACAAAGAATAGGTAGAATTGCAGGTAGGACATAGCA
ACAAAGAATAAAGGAGACAAGAGAGGGGAACGCCTGCCATTCGCGATGCG
CACCGTCC
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Coding sequence (CDS) from alignment at chr8:207949..210756+

>NO08G00570.1 ID=NO08G00570.1|Name=NO08G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr8:207949..210756+ (Nannochloropsis oceanica)
ATGAAGCCACCTGTTTCAATCCAGGCGGAGCGTGACAGGAATCGAGGTAT
CACGGGCCATACGGACATCACCTCCTCCGTGACCGCCCTCCGGGGGAGCA
TGCAACGCCAATTCACTGACTCCAGCAAAGCTCTCCAAGCCTCCATCCAA
CAAAAACGCGAGCACATGCGCCACGAAATCGCCGCCCTTCGCCTCACCAG
CGGCCCTTCTTCCAAAGTTTCCCCCTTCCCCTCTTCGTCCTCCCTCCCTC
CCTCCTCCCCTTCGTCCTCCCTCCCTCCCTCCTCCCCTTCCTCCTCCCCC
GTCCTTCCTCCTAGCACCAGCGCCAGTCCAGTCGTTCTAGAGATTCAACG
TAGTCGTGGTCCACATCAATCTGTAGCTGCCATGAGAGACCAATGGCAGG
GCTCTTCGCAAAAGATCGAAACCCGGGCAGAGGCCCTCTCACGTTCGATA
GGGGAGGAAGAAAAGTATCGGCGCGCCTGCACTCGAGCAAAAGAATTGTT
GTCCCATCCCCATCTAGAAGCAGCATCTCTTCACCTCTGCCAACGAGGAG
AGCATGCATTTTCCTCCCTTCCCACCTCCTCGTCGTTCCAGGGAGAGAGC
CACGAGGAGTTCCTGACGCGCTTTCGTTCCCCTTCCTTGACGTCCACCAA
GGAAAAAGAGTTGTTGATTCAGGCGTGGGCGAGGGACAAGAAACAGCTGC
AGCAGCAAGGAGGAGGAGAAGGGATGCAGGCATGGAGGGAGTGGAGGGTG
GAGGAGGGCAAGATATTTTTAAGCGAGGTGCTAGGGGTTGGGGTAGGAGG
AGAGGAGGAGGAGGAAGGGGAGGGATGGTTGGCGATATTGGAAAGGGCCG
TAATGGCTGTGGAGGAGGAAGGAGCGAGGGAGGGAGGGGAGGAAGGAGGA
AGGGAGGGAGTGGAGGAAGGAGGGCATGGGCGGGAGGGGAAAGTGATGGT
GCCGCCCAAGCGTTTGTTTGAAGACGAAGACGAAGACGAAGACGAAGTGG
AGGGGGAAGAGGAGGAGGGGGAGGAAAAGGAGGTAGTGATAGTAGAGAAA
GAGGAAGGAGGGAGGGCGGCGGAAATAACAGAGGAAAAGGTGCGGGAGGG
GGAGGAAGAAAGTGAGAAAGGACGGGAGGAAAGGGATAGGAAGGAGGAAG
CTCTTCCCTCGATCGACGCGGCATCTGATGAGGGGGAGATTGCAATGAGG
AAAATGAGCAAGCAGATGACAATGAACAGAGAAAGTGATGCAGCTGCTGC
TCCTGCCGAGGAAGGGGGGACAGGAGAGGAACCGTTGCAGCAGCATTTGC
AACCTCACGACGAGGCGGATGGGCTAGCAATAAAGTCAAGTACCCCCCGC
CCCCCCCGGCCCTCCCATTTCTCCACTTTTATCTCCTCCTCCTCTTCATC
CTTCTCCTCCTCCTCCTCCTCCTCTCCTTCGTCTTCAAACAAACGCTTGG
GCGGCACCATCACTTTCCCCTCCCGCCTATGCCCTCCTTCCTCCCATCCC
TCCCTCCCTCCTTCCTCCTCCGCGGAAATTCGCCGGCGCCACTTGAAAGA
GAAGGGATTTTGGCTCTCGCACAAGCTGCCTGCGTTGCCTTCAACCACCA
GTCCCCTCCTTTCTCCTCCTCCTCCTTCTCCTCCTGCCCCTCCCGTGATG
GAAACGGTCAGCAGTTGCGGCGTTCAGGACAGCAGAAGCGAGAAGAAGAT
GGCTCGGACGCAAATTAAGGCGGATGGGGGAGCAGCAGGAGTGGCAGGGG
GATGGAGGGGTGTGGCAGCTGGCAGCACCCCTACCCACAGGAGGACGAGG
AGCAGGAGCAGCAGGAGCACCAGCAGCAGCAGCATTGGTGCAACCGCTGC
AAGCAAGGCCAAGGAGACAGGAAAGGTGTGTGTGTCGACGGCAGGCGCGA
AGAAGAATGTAAAAGAGATGTGGAGGTAA
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Synonyms
Publications