NO08G00560.1, NO08G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00560.1
Unique NameNO08G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1769
Alignment locationchr8:205443..207703 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:205443..207703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00560.1 vs.
Match: EWM26543.1 (hypothetical protein Naga_100409g7 [Nannochloropsis gaditana])

HSP 1 Score: 279.3 bits (713), Expect = 1.800e-71
Identity = 131/199 (65.83%), Postives = 159/199 (79.90%), Query Frame = 0 
Query:   19 MQHGVDPASPPPACYHCLWGHILPGAYLLFRSFLLILEAISLRQPKRFSPRTLGRLRAYSSLIAGPFLAMGEGITHKAWHAGNLQHFSIYLLIFMDGLVAWMCLVGGRAGGRKGERRLWPMSLLGVWEGGMLGCVGWEMVSHFHGGALITQMHAMMFPLLSLAATVLVVERVVMRGE----REGLRLAGAVAMAWVGCW 214
            M H  D  SPPP C HC WGH++PG+YLLFR+FLL+LEA+S++QP RF PRT  RLRAYSSL+AGP LA+GEG+THKAWH  N+QHFSIY LIF+DGLV+W CL+     GRKG  R WP++LLGVWEGG+  CVG++MVSHFHGG LIT MHA+M PLL+L  T+L+V+RV+M  E    REG++LA AV MAWVGCW
Sbjct:    6 MVHTGDAMSPPPPCRHCFWGHVMPGSYLLFRAFLLLLEALSIQQPGRFRPRTQARLRAYSSLLAGPLLALGEGLTHKAWHGANVQHFSIYSLIFLDGLVSWYCLLSHPERGRKG--RGWPVALLGVWEGGVSACVGYQMVSHFHGGILITSMHALMSPLLTLVGTLLLVDRVLMGREGGQRREGVKLAAAVGMAWVGCW 202
The following BLAST results are available for this feature:
BLAST of NO08G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26543.11.800e-7165.83hypothetical protein Naga_100409g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00560NO08G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00560.1NO08G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00560.1.cds1NO08G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00560.1.cds2NO08G00560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00560.1.cds3NO08G00560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00560.1 ID=NO08G00560.1|Name=NO08G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp
CCATAGACATACCATCCACAGCGCAGGCAAGGAAACAAACAAAGCCGTGC
GGGGATGCTGCGGGCTCTGGATCCCGTCCAGGGTCATATGGAGAGCCTGA
GTATGCACATGCAGCATGGCGTGGACCCAGCCAGCCCGCCCCCCGCCTGC
TACCACTGCCTATGGGGGCACATTCTCCCCGGTGCCTACCTCCTCTTTCG
ATCCTTCCTCCTGATCCTCGAGGCCATCTCCCTACGTCAACCCAAGCGCT
TTTCTCCACGGACCCTCGGTCGACTCCGCGCGTACAGCAGCTTGATAGCC
GGCCCGTTCCTGGCAATGGGGGAAGGAATCACGCACAAGGCCTGGCATGC
AGGGAACTTGCAACATTTTTCGATCTACCTGTTGATTTTCATGGATGGCC
TCGTGGCGTGGATGTGCTTGGTGGGAGGGAGGGCGGGAGGGAGGAAGGGG
GAGAGGAGGTTATGGCCCATGAGTCTGCTGGGGGTGTGGGAGGGGGGAAT
GCTGGGGTGCGTCGGATGGGAAATGGTGAGTCATTTTCACGGGGGGGCGT
TGATCACCCAGATGCACGCCATGATGTTCCCCTTGCTGTCTCTGGCAGCC
ACAGTGCTGGTGGTGGAGAGGGTGGTGATGAGGGGGGAAAGGGAGGGACT
ACGGTTGGCAGGGGCTGTGGCGATGGCGTGGGTTGGGTGTTGGTTTTCGT
TGATTGGACCAGGTTTTTGGTGGGAGGGAGGGAGGGAAGGGTGGCTGGGG
AAGGCGTATGATGAGGTGAGGGAGGGAGGGGAGAAGGGGGTGATGGAGGG
GCATGAGGTGCTCATGTGGTCGGCGACATTGTTGACTTTTGTATTTGTGG
TGGCCTTTCTGGGGGTGGGCGTTGTGTGGTTGGTGATGGGGGGAGGGAGG
GAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGATGGGGGAAG
GAGAGGAAAGAGGGGGGCTTACACAGAATTGGAGATGAGTACGACAGGGG
ATGGAGGAGGGTTTGGAGGACGAGGAAGAGGAGGGGGGGAGGAGGGGGAG
GAGGGAGGGGGGAAAGGGGTAAGCGGGGAAAGGAGGAAAGGAGGGAGCGA
AGGAGGGCAGTGCGTGCATGGTCCGGGACGGAGGAGAGCGAGGAGGAAGG
GGAGGGGGATGGACAGAGGGAGCAAGGGAGGGAGGGAGGGAAGAGAATAA
TCAGTGATGAGGAAGAGGGAGTGGTTTTGGCATGAGCAGGGAGAGAGGGA
GGGAGGCAAGGAGGCAGGGAACGAAGCAAGGGGTTTTTGTAGAGAGTTTT
AGTGGGGGATTGTAGAGAGATCTATCAGTCTTTGTATCATACATGCACTT
CCCCGCACTCTGCCTTAGATGAGTCAGAGGGGAGAAGGAGGGCGGGAGGG
AGGGAGGGAGGGAGAGAGAAGTTCTCAAAGTAATAACTTATTGCGGGCAG
GAGAGGCCTAGACAGAGGGAGGTTTAAGCATCCTCCTTCCTTCTCTCCCT
CTCTTCCCCCCTCCCTGCTCTCATGGCAGCACGCCATTCAGAAAGAATAG
TATGTACTTCACGGCCGGAGCGCACCGAGAGGGAATAGGGAACCACCCCA
CGTAAAAGAAGTCAAGGAAATACAGGTAATACATTAGCCTCCGCAAAAAG
ACACACGATGAAGGGAAAGGGAAACGAGGAGCGGGAAAAAAGTGCACGAC
ACGACGACGGTGTGGGTGCTTACACCCCCATCTCTCTAAAGAAAAACGAG
TCACAAGGATGAACGAAAC
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protein sequence of NO08G00560.1

>NO08G00560.1-protein ID=NO08G00560.1-protein|Name=NO08G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MLRALDPVQGHMESLSMHMQHGVDPASPPPACYHCLWGHILPGAYLLFRS
FLLILEAISLRQPKRFSPRTLGRLRAYSSLIAGPFLAMGEGITHKAWHAG
NLQHFSIYLLIFMDGLVAWMCLVGGRAGGRKGERRLWPMSLLGVWEGGML
GCVGWEMVSHFHGGALITQMHAMMFPLLSLAATVLVVERVVMRGEREGLR
LAGAVAMAWVGCWFSLIGPGFWWEGGREGWLGKAYDEVREGGEKGVMEGH
EVLMWSATLLTFVFVVAFLGVGVVWLVMGGGREGGEEEEEEEEWEDGGRR
GKRGAYTELEMSTTGDGGGFGGRGRGGGEEGEEGGGKGVSGERRKGGSEG
GQCVHGPGRRRARRKGRGMDRGSKGGREGRE*
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mRNA from alignment at chr8:205443..207703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00560.1 ID=NO08G00560.1|Name=NO08G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at chr8:205443..207703- (Nannochloropsis oceanica)
CCATAGACATACCATCCACAGCGCAGGCAAGGAAACAAACAAAGCCGTGC
GGGGATGCTGCGGGCTCTGGATCCCGTCCAGGGTCATATGGAGAGCCTGA
GTATGCACATGGTACGTAAATCAGGAGGAGGAACAAGGGAGAGGCTTCGG
GGTGGAGAAGGGGAGGAGGGACGGAGGCCATATGGGGAGCCCTTAGATCC
CTAAGGCGCCATTCCAAGGCACACCGATAGCATCGAGGACTGATCTGAAA
CAAGCTATGTGTGTGCGTATGCGTGCGCTTTGACTGGGTCGATGGGCTTG
GCAAATCCGGGTCGAGAAGGATCGGTCGAGGCCGGCTCTCGCGTTCATGC
CATATGTCCCGCTCCCTATCCCAACAGGTCGCTCCCTGCCCCCTCTTCCC
CAACTCCTGTCCGCAACCTCGCACCCGCAACGACAAGTAGCCGACCACTT
TCTCATTCTTGCTCTCCGTGCCTTCCCCTCCCTCCCCCTTCCCCTCCCTA
CCCCTTCCAGCAGCATGGCGTGGACCCAGCCAGCCCGCCCCCCGCCTGCT
ACCACTGCCTATGGGGGCACATTCTCCCCGGTGCCTACCTCCTCTTTCGA
TCCTTCCTCCTGATCCTCGAGGCCATCTCCCTACGTCAACCCAAGGTACG
TTCAATGCACCCACGGTCACCGCCCCCTGCCATCATGGCCACCATCTCAC
CTTCCCTCCCTCCCTCTCTTCCCTCCCTTCCCCCAAAGCGCTTTTCTCCA
CGGACCCTCGGTCGACTCCGCGCGTACAGCAGCTTGATAGCCGGCCCGTT
CCTGGCAATGGGGGAAGGAATCACGCACAAGGCCTGGCATGCAGGGAACT
TGCAACATTTTTCGATCTACCTGTTGATTTTCATGGATGGCCTCGTGGCG
TGGATGTGCTTGGTGGGAGGGAGGGCGGGAGGGAGGAAGGGGGAGAGGAG
GTTATGGCCCATGAGTCTGCTGGGGGTGTGGGAGGGGGGAATGCTGGGGT
GCGTCGGATGGGAAATGGTGAGTCATTTTCACGGGGGGGCGTTGATCACC
CAGATGCACGCCATGATGTTCCCCTTGCTGTCTCTGGCAGCCACAGTGCT
GGTGGTGGAGAGGGTGGTGATGAGGGGGGAAAGGGAGGGACTACGGTTGG
CAGGGGCTGTGGCGATGGCGTGGGTTGGGTGTTGGTTTTCGTTGATTGGA
CCAGGTTTTTGGTGGGAGGGAGGGAGGGAAGGGTGGCTGGGGAAGGCGTA
TGATGAGGTGAGGGAGGGAGGGGAGAAGGGGGTGATGGAGGGGCATGAGG
TGCTCATGTGGTCGGCGACATTGTTGACTTTTGTATTTGTGGTGGCCTTT
CTGGGGGTGGGCGTTGTGTGGTTGGTGATGGGGGGAGGGAGGGAGGGAGG
GGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGATGGGGGAAGGAGAGGAA
AGAGGGGGGCTTACACAGAATTGGAGATGAGTACGACAGGGGATGGAGGA
GGGTTTGGAGGACGAGGAAGAGGAGGGGGGGAGGAGGGGGAGGAGGGAGG
GGGGAAAGGGGTAAGCGGGGAAAGGAGGAAAGGAGGGAGCGAAGGAGGGC
AGTGCGTGCATGGTCCGGGACGGAGGAGAGCGAGGAGGAAGGGGAGGGGG
ATGGACAGAGGGAGCAAGGGAGGGAGGGAGGGAAGAGAATAATCAGTGAT
GAGGAAGAGGGAGTGGTTTTGGCATGAGCAGGGAGAGAGGGAGGGAGGCA
AGGAGGCAGGGAACGAAGCAAGGGGTTTTTGTAGAGAGTTTTAGTGGGGG
ATTGTAGAGAGATCTATCAGTCTTTGTATCATACATGCACTTCCCCGCAC
TCTGCCTTAGATGAGTCAGAGGGGAGAAGGAGGGCGGGAGGGAGGGAGGG
AGGGAGAGAGAAGTTCTCAAAGTAATAACTTATTGCGGGCAGGAGAGGCC
TAGACAGAGGGAGGTTTAAGCATCCTCCTTCCTTCTCTCCCTCTCTTCCC
CCCTCCCTGCTCTCATGGCAGCACGCCATTCAGAAAGAATAGTATGTACT
TCACGGCCGGAGCGCACCGAGAGGGAATAGGGAACCACCCCACGTAAAAG
AAGTCAAGGAAATACAGGTAATACATTAGCCTCCGCAAAAAGACACACGA
TGAAGGGAAAGGGAAACGAGGAGCGGGAAAAAAGTGCACGACACGACGAC
GGTGTGGGTGCTTACACCCCCATCTCTCTAAAGAAAAACGAGTCACAAGG
ATGAACGAAAC
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Coding sequence (CDS) from alignment at chr8:205443..207703-

>NO08G00560.1 ID=NO08G00560.1|Name=NO08G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr8:205443..207703- (Nannochloropsis oceanica)
ATGCTGCGGGCTCTGGATCCCGTCCAGGGTCATATGGAGAGCCTGAGTAT
GCACATGCAGCATGGCGTGGACCCAGCCAGCCCGCCCCCCGCCTGCTACC
ACTGCCTATGGGGGCACATTCTCCCCGGTGCCTACCTCCTCTTTCGATCC
TTCCTCCTGATCCTCGAGGCCATCTCCCTACGTCAACCCAAGCGCTTTTC
TCCACGGACCCTCGGTCGACTCCGCGCGTACAGCAGCTTGATAGCCGGCC
CGTTCCTGGCAATGGGGGAAGGAATCACGCACAAGGCCTGGCATGCAGGG
AACTTGCAACATTTTTCGATCTACCTGTTGATTTTCATGGATGGCCTCGT
GGCGTGGATGTGCTTGGTGGGAGGGAGGGCGGGAGGGAGGAAGGGGGAGA
GGAGGTTATGGCCCATGAGTCTGCTGGGGGTGTGGGAGGGGGGAATGCTG
GGGTGCGTCGGATGGGAAATGGTGAGTCATTTTCACGGGGGGGCGTTGAT
CACCCAGATGCACGCCATGATGTTCCCCTTGCTGTCTCTGGCAGCCACAG
TGCTGGTGGTGGAGAGGGTGGTGATGAGGGGGGAAAGGGAGGGACTACGG
TTGGCAGGGGCTGTGGCGATGGCGTGGGTTGGGTGTTGGTTTTCGTTGAT
TGGACCAGGTTTTTGGTGGGAGGGAGGGAGGGAAGGGTGGCTGGGGAAGG
CGTATGATGAGGTGAGGGAGGGAGGGGAGAAGGGGGTGATGGAGGGGCAT
GAGGTGCTCATGTGGTCGGCGACATTGTTGACTTTTGTATTTGTGGTGGC
CTTTCTGGGGGTGGGCGTTGTGTGGTTGGTGATGGGGGGAGGGAGGGAGG
GAGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGATGGGGGAAGGAGA
GGAAAGAGGGGGGCTTACACAGAATTGGAGATGAGTACGACAGGGGATGG
AGGAGGGTTTGGAGGACGAGGAAGAGGAGGGGGGGAGGAGGGGGAGGAGG
GAGGGGGGAAAGGGGTAAGCGGGGAAAGGAGGAAAGGAGGGAGCGAAGGA
GGGCAGTGCGTGCATGGTCCGGGACGGAGGAGAGCGAGGAGGAAGGGGAG
GGGGATGGACAGAGGGAGCAAGGGAGGGAGGGAGGGAAGAGAATAA
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Synonyms
Publications