NO08G00200.1, NO08G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00200.1
Unique NameNO08G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr8:80644..82579 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:80644..82579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00200.1 vs.
Match: EWM26508.1 (hypothetical protein Naga_101473g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.700e-53
Identity = 123/189 (65.08%), Postives = 149/189 (78.84%), Query Frame = 0 
Query:    1 MGAGIELPVDSQSRMAVGAVGMGFSLLLFLVASFRLGKFCQAYGWKLREVMGDSFGRKRLSIHLLLVIGTCFVIPLYALLLHTHLSSSSSTSTITSPILSSVLFTISTSFLSS--PS--------SSTPSFCLGLLSLLRFQLLCTLAALGLVLSDWRIDVYEAPLLRARRVWMYQIRDAATAGLLVVA 180
            MGAG+ELPVD+QSR+AVG++GMGFS+LL + AS RL +FC AY W+ RE++ DSFGRKRL+IHL+LV GT FVIPLYALLLH      S+ S+    +LSS  F  S+S  SS  PS        SS+P+FC+GLL+L+RFQLLCTLA+LGLVLSDWRIDVYEAPL RARRVWMY++RDA TAGLL +A
Sbjct:    1 MGAGMELPVDNQSRLAVGSIGMGFSVLLCITASVRLSRFCLAYEWRFREIVSDSFGRKRLAIHLVLVAGTWFVIPLYALLLHARPPHPSTLSS----LLSSFHFLFSSSLPSSSFPSLSLFEPAPSSSPTFCMGLLALIRFQLLCTLASLGLVLSDWRIDVYEAPLHRARRVWMYELRDAVTAGLLCLA 185
The following BLAST results are available for this feature:
BLAST of NO08G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26508.11.700e-5365.08hypothetical protein Naga_101473g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00200NO08G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00200.1NO08G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00200.1.cds1NO08G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00200.1.cds2NO08G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00200.1.cds3NO08G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00200.1.cds4NO08G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00200.1.cds5NO08G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00200.1 ID=NO08G00200.1|Name=NO08G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ACACCAGAGGCCACAGCACGCTGTAGCTAGTTCACTGCGAGTCGATTCAT
GCCACCTCTTGCCTCCAAGTGGTAATTCCTGCCAGCCTTGTCTGCCAAAA
ACGCTTCACTGTCATCCTCGCCGTCGTGCATCAAGCAAGCATGGGCGCAG
GCATTGAGTTGCCCGTAGACAGCCAGAGTCGCATGGCCGTGGGTGCCGTG
GGGATGGGATTCTCATTGCTCTTATTTCTCGTGGCATCTTTTCGCCTCGG
CAAGTTTTGTCAGGCGTATGGATGGAAGTTGCGAGAGGTCATGGGGGACT
CATTTGGGCGGAAGCGTCTGAGCATTCACCTCTTGCTTGTTATTGGGACA
TGCTTTGTCATTCCTCTCTACGCACTCCTTCTCCACACCCACCTTTCCTC
ATCCTCCTCCACCTCCACCATCACCTCTCCCATCCTCTCCTCCGTCCTTT
TCACCATTTCCACTTCCTTCCTGTCCTCCCCCTCTTCCTCTACTCCATCC
TTCTGCCTGGGCCTGCTCTCCCTCCTCCGTTTCCAGCTCCTCTGCACCCT
CGCCGCACTCGGCCTCGTCCTAAGTGACTGGCGAATCGACGTCTATGAGG
CGCCTTTGCTCCGGGCCCGACGCGTGTGGATGTACCAAATCCGGGATGCG
GCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACGTGGCAGGACC
AGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAGTACATCGGTG
ACGATTCGTCCACCTCGAGCAATAGCGGCGGTGGCACCGCCCAGGCCTAC
GTGGTGGATGCCGCCTACCTGGTTCAACTTGCCTGTGCCTTCCTCCTTAT
GCTCTCCATGTTGTACAGCGGGCTACAGATGAAGAAACGGCTCGTGTGGG
CCTCCCGCTCTCCCCTTCGTCAGCACGACCTCTTCCGCATCGCCCTCCTC
CAGCTTAACATCCTCCTGGCTTTCTGCATGGCAGCCTTTTGCGCCCAAGT
CATCACGCTGGCCTTCAACTACGTCCAGCTCGTGGTGTACCACCGCACAC
TTCTGCCAGACATCTGGCTGTGGGTGGTCGGGGCCTGGTTCCCTCTCGCC
GCATGGTCCGCCTCCTGCCTCTACCTCGCCCGCAAGGCCAAGAGGGCGTA
TGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGCAGGGGCGACTCCCA
GAGAACGGGAGTACGCGCAAGCGTTGCTAGGGAGAGAAGGGGCTGGGGTT
TAAAGGAAGGGAGGGAGAGAGGGAGAGACGGTGTGTATATAAATGTACGT
ACGTAGGACGAGGTTGAAGTCATCACACAACAGCACGAAGAACGAATGGA
GGGAGGGAG
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protein sequence of NO08G00200.1

>NO08G00200.1-protein ID=NO08G00200.1-protein|Name=NO08G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGAGIELPVDSQSRMAVGAVGMGFSLLLFLVASFRLGKFCQAYGWKLREV
MGDSFGRKRLSIHLLLVIGTCFVIPLYALLLHTHLSSSSSTSTITSPILS
SVLFTISTSFLSSPSSSTPSFCLGLLSLLRFQLLCTLAALGLVLSDWRID
VYEAPLLRARRVWMYQIRDAATAGLLVVAFLLNVAGPAFCLDKRWAEENE
YIGDDSSTSSNSGGGTAQAYVVDAAYLVQLACAFLLMLSMLYSGLQMKKR
LVWASRSPLRQHDLFRIALLQLNILLAFCMAAFCAQVITLAFNYVQLVVY
HRTLLPDIWLWVVGAWFPLAAWSASCLYLARKAKRAYGGREGGREGGMAG
ATPREREYAQALLGREGAGV*
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mRNA from alignment at chr8:80644..82579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00200.1 ID=NO08G00200.1|Name=NO08G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at chr8:80644..82579- (Nannochloropsis oceanica)
ACACCAGAGGCCACAGCACGCTGTAGCTAGTTCACTGCGAGTCGATTCAT
GCCACCTCTTGCCTCCAAGTGGTAATTCCTGCCAGCCTTGTCTGCCAAAA
ACGCTTCACTGTCATCCTCGCCGTCGTGCATCAAGCAAGCATGGGCGCAG
GCATTGAGTTGCCCGTAGACAGCCAGAGTCGCATGGCCGTGGGTGCCGTG
GGGATGGGATTCTCATTGCTCTTATTTCTCGTGGCATCTTTTCGCCTCGG
CAAGTTTTGTCAGGCGTATGGATGGAAGTTGCGAGAGGTCATGGGGTGAG
TGACAGAGTTGAGGGAGCATGGGCAAGGGAAGAGGGGCAGGGTGGGACTG
GGGGAGGAGATAAAGGAGAAGGGAAGCAAAAGAGACACTCGTCCACGCAA
TGACTCATGCATTCACGACTTTACACGTACACATGTCATGTTCACACAGG
GACTCATTTGGGCGGAAGCGTCTGAGCATTCACCTCTTGCTTGTTATTGG
GACATGCTTTGTCATTCCTCTCTACGCACTCCTTCTCCACACCCACCTTT
CCTCATCCTCCTCCACCTCCACCATCACCTCTCCCATCCTCTCCTCCGTC
CTTTTCACCATTTCCACTTCCTTCCTGTCCTCCCCCTCTTCCTCTACTCC
ATCCTTCTGCCTGGGCCTGCTCTCCCTCCTCCGTTTCCAGCTCCTCTGCA
CCCTCGCCGCACTCGGCCTCGTCCTAAGTGACTGGCGAATCGACGTCTAT
GAGGCGCCTTTGCTCCGGGCCCGACGCGTGTGGATGTACCAAATCCGGGA
TGCGGCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACGTGGCAG
GACCAGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAGTACATC
GGTAGGTGAGAGGCGGAGGAGAAGGGAGGAGGAGAGTGAAGGAAGGAGGG
AGAAGGGGGGGGGTCGGCACAGGAAACTCGTCGACCCGCCAAACGTCACT
CTCACCTCCTGGCCACCCTCCCGCCTTCCCTCCCAGGTGACGATTCGTCC
ACCTCGAGCAATAGCGGCGGTGGCACCGCCCAGGCCTACGTGGTGGATGC
CGCCTACCTGGTTCAACTTGCCTGTGCCTTCCTCCTTATGCTCTCCATGT
TGTACAGCGGGCTACAGGTGGGAAGGGAGGGAAGGAGGGAAAATGGGAAG
GAGCGAGGGGCCGCTCACTTGAACTCAGCAGTCCCACCCATCTGCCCTTC
TCGCCTGATCCACGCCGCTGCATCCCTCCCCTCCATTCTCTTTTCCCTCC
GTCCCCCCATCAAAGATGAAGAAACGGCTCGTGTGGGCCTCCCGCTCTCC
CCTTCGTCAGCACGACCTCTTCCGCATCGCCCTCCTCCAGCTTAACATCC
TCCTGGCTTTCTGCATGGCAGCCTTTTGCGCCCAAGTCATCACGCTGGCC
TTCAACTACGTCCAGCTCGTGGTGTACCACCGCACACTTCTGCCAGGTGC
GTCCTGGTGGTTGCCCTTCCTCCCTCCGTCCTTCCCTCCCTCCCCGCTCT
TCGTTTGGCATGCGGTCTGCCTCCTGCTTCGCTGGCTCACCCTCTCCTCC
CTCCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTAAGACATCTGGCTGTGG
GTGGTCGGGGCCTGGTTCCCTCTCGCCGCATGGTCCGCCTCCTGCCTCTA
CCTCGCCCGCAAGGCCAAGAGGGCGTATGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGATGGCAGGGGCGACTCCCAGAGAACGGGAGTACGCGCAAGCG
TTGCTAGGGAGAGAAGGGGCTGGGGTTTAAAGGAAGGGAGGGAGAGAGGG
AGAGACGGTGTGTATATAAATGTACGTACGTAGGACGAGGTTGAAGTCAT
CACACAACAGCACGAAGAACGAATGGAGGGAGGGAG
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Coding sequence (CDS) from alignment at chr8:80644..82579-

>NO08G00200.1 ID=NO08G00200.1|Name=NO08G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr8:80644..82579- (Nannochloropsis oceanica)
ATGGGCGCAGGCATTGAGTTGCCCGTAGACAGCCAGAGTCGCATGGCCGT
GGGTGCCGTGGGGATGGGATTCTCATTGCTCTTATTTCTCGTGGCATCTT
TTCGCCTCGGCAAGTTTTGTCAGGCGTATGGATGGAAGTTGCGAGAGGTC
ATGGGGGACTCATTTGGGCGGAAGCGTCTGAGCATTCACCTCTTGCTTGT
TATTGGGACATGCTTTGTCATTCCTCTCTACGCACTCCTTCTCCACACCC
ACCTTTCCTCATCCTCCTCCACCTCCACCATCACCTCTCCCATCCTCTCC
TCCGTCCTTTTCACCATTTCCACTTCCTTCCTGTCCTCCCCCTCTTCCTC
TACTCCATCCTTCTGCCTGGGCCTGCTCTCCCTCCTCCGTTTCCAGCTCC
TCTGCACCCTCGCCGCACTCGGCCTCGTCCTAAGTGACTGGCGAATCGAC
GTCTATGAGGCGCCTTTGCTCCGGGCCCGACGCGTGTGGATGTACCAAAT
CCGGGATGCGGCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACG
TGGCAGGACCAGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAG
TACATCGGTGACGATTCGTCCACCTCGAGCAATAGCGGCGGTGGCACCGC
CCAGGCCTACGTGGTGGATGCCGCCTACCTGGTTCAACTTGCCTGTGCCT
TCCTCCTTATGCTCTCCATGTTGTACAGCGGGCTACAGATGAAGAAACGG
CTCGTGTGGGCCTCCCGCTCTCCCCTTCGTCAGCACGACCTCTTCCGCAT
CGCCCTCCTCCAGCTTAACATCCTCCTGGCTTTCTGCATGGCAGCCTTTT
GCGCCCAAGTCATCACGCTGGCCTTCAACTACGTCCAGCTCGTGGTGTAC
CACCGCACACTTCTGCCAGACATCTGGCTGTGGGTGGTCGGGGCCTGGTT
CCCTCTCGCCGCATGGTCCGCCTCCTGCCTCTACCTCGCCCGCAAGGCCA
AGAGGGCGTATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGCAGGG
GCGACTCCCAGAGAACGGGAGTACGCGCAAGCGTTGCTAGGGAGAGAAGG
GGCTGGGGTTTAA
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Synonyms
Publications