NO08G00170.1, NO08G00170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00170.1
Unique Name	NO08G00170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1931
Alignment location	chr8:64112..68335 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:64112..68335 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00170.1 vs.
Match: CBJ25911.1 (Serine/threonine-protein phosphatase PP2A catalytic subunit [Ectocarpus siliculosus])

HSP 1 Score: 575.9 bits (1483), Expect = 7.800e-161
Identity = 257/307 (83.71%), Postives = 285/307 (92.83%), Query Frame = 0

Query:    6 DEAAVGTVEAWIGKLFECKPLTEGEVKQLCEKAKEVLTDESNVQPVQCPVTICGDIHGQFHDLMELFRIGGKAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERVFILRGNHESRQITQVYGFYDECYRKYGSANVWKLFTDLFDYLPVTALVDGQIFCLHGGLSPSIDSLDNIRQLDRVQEVPHEGPMCDLLWSDPDDRVGWGISPRGAGYTFGQDVSEQYNHVNGLSLIARAHQLVMDGYNWSHDMNVVTIFSAPNYCYRCGNQAAILEVDENLNKLFLQFDPAPRRGEPEVTRRTPDYFL 313
            +E+ V  V+AW+ KL + K L E EV QLC KA++VL +ESNVQPV+CPVT+CGD+HGQFHDLMELFRIGGKAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYP+R++ILRGNHESRQITQVYGFYDEC RKYG+A VWK+FTD+FDYLP+TALVD QIFCLHGGLSPSI++LD+IR LDRVQEVPHEGPMCDLLWSDPDDR GWGISPRGAGYTFGQD+SEQYNH NGLSL++RAHQLVMDGYNWSH M+VVTIFSAPNYCYRCGNQAAI+E+DE+ NK FLQFDPAPRRGEP VTRRTPDYFL
Sbjct:    6 EESTVNCVDAWVAKLLDGKTLAESEVVQLCNKARDVLLEESNVQPVRCPVTVCGDVHGQFHDLMELFRIGGKAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPDRLYILRGNHESRQITQVYGFYDECVRKYGNATVWKMFTDVFDYLPLTALVDDQIFCLHGGLSPSIETLDHIRALDRVQEVPHEGPMCDLLWSDPDDRYGWGISPRGAGYTFGQDISEQYNHTNGLSLVSRAHQLVMDGYNWSHGMSVVTIFSAPNYCYRCGNQAAIMEIDEHFNKTFLQFDPAPRRGEPHVTRRTPDYFL 312

The following BLAST results are available for this feature:

BLAST of NO08G00170.1 vs.

BLAST of NO08G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ25911.1	7.800e-161	83.71	Serine/threonine-protein phosphatase PP2A catalyti...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00170	NO08G00170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00170.1	NO08G00170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00170.1.cds1	NO08G00170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds2	NO08G00170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds3	NO08G00170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds4	NO08G00170.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds5	NO08G00170.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds6	NO08G00170.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds7	NO08G00170.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds8	NO08G00170.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds9	NO08G00170.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00170.1.cds10	NO08G00170.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:64112..68335-
coding sequence from alignment at chr8:64112..68335-

mRNA sequence

>NO08G00170.1 ID=NO08G00170.1|Name=NO08G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1931bp
ACATCACAGACGGGACTGCGGGGTGTGTTTTCACATCTGCCGTTGGGCGC
AGCCCACCTCCTTCCTCTCCGCTTGCCCTCTCCCTCCTCCCATCTTTCCT
TCCGTACACACACGTGATGGACTTCCTCTCCGACGAAGCGGCGGTTGGCA
CGGTGGAAGCATGGATAGGGAAGCTCTTTGAGTGCAAGCCTTTGACAGAA
GGAGAGGTAAAGCAGTTATGCGAGAAGGCCAAGGAGGTCCTGACCGACGA
GAGTAACGTGCAGCCGGTTCAATGCCCTGTCACCATTTGCGGGGACATCC
ACGGGCAGTTCCACGACCTGATGGAGCTCTTCCGCATCGGCGGCAAGGCG
CCCGACACGAACTACCTTTTTATGGGCGATTACGTCGACCGAGGCTACTA
CTCGGTCGAGACCGTCACCCTCCTCGTGGCCCTCAAGGTCCGCTATCCCG
AGAGGGTTTTCATCCTTCGCGGGAACCACGAGTCAAGACAAATCACACAG
GTGTACGGCTTCTATGACGAGTGCTACCGGAAGTACGGTTCGGCCAATGT
CTGGAAACTTTTCACAGACCTGTTCGACTACCTTCCCGTCACTGCCCTGG
TGGATGGACAGATCTTCTGCCTTCACGGCGGCCTCTCCCCCTCCATCGAC
TCCCTCGACAACATCCGCCAGCTCGATCGCGTCCAAGAGGTGCCTCATGA
AGGTCCTATGTGCGACTTGCTGTGGTCAGACCCCGACGACCGCGTTGGAT
GGGGCATCTCGCCACGTGGCGCCGGGTACACCTTCGGCCAGGATGTCTCG
GAGCAGTACAACCACGTGAACGGCCTCTCCCTCATAGCCCGGGCCCACCA
GCTCGTGATGGATGGTTACAATTGGTCCCACGACATGAACGTGGTGACGA
TCTTCTCCGCCCCCAACTACTGCTACCGCTGCGGCAACCAAGCGGCCATC
CTGGAGGTGGACGAGAACCTGAACAAGCTCTTCCTGCAATTCGACCCTGC
CCCTCGAAGAGGCGAGCCCGAGGTGACCAGACGGACGCCTGACTACTTCT
TATAGGAAGGAGGGGGGGAGGGAGCGAGGGAGAGAGGGAGGGAGGGGTAG
AAGAAGAAAGTTTTCTGCTCTTTTTCTCCCTCTGGATGCGCTGTTCCAGC
GCCGAGGGAGGGAGGTAGGGAAGGGCGAAAGAAGGACTACTGGAAGAACA
GATGTTCACTGCCTGAAGAAATGGAGAAAGGGCGAGGGATGAGGATCAGA
GAAAGGGAAAAGGATTCAAAGAAAAGTGGGACTGGCCCATACCTCTTTTA
CTCTTCATTCTGGCTTTCGTTGTCATTCTTTATTTTTTATGAAAAATCAG
TCCTGCTTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGCGT
GTGTGTGTGTGCGTGTGAGCGCCTCTCAAAACTGTCAAAACGTGTCGCCA
TACCGGCTTTCATCTTCTGCACTTCCTACCCCTCCCCCTACCGCATGTCT
GATCTCTTGCTTGAAAATATCATGATGACCGGTACTCTTTTTCTTCTGTG
TGCCTGTGTGCCATATTTCCTCCTTTCTATTTCTTCTTCTTCTCCTCCTC
TTCCCATGATCTACTCTTCATGCGATCTCTACATCGATCCACCTTTTTTC
TCTCCTTCTCTGACTTCCTACCTATCTCCTGAGTGACCGATGTGTACCGT
CTTCCTAATCAAACCAACCTTGGGCTCATATGATATCCTCATTCCCTTCT
TTCTCACCCTCCCTCCTTTCCTCCTCCTCCTCCTCCTCCCACTCGTAGCA
TTCAATTTCCCCTCCATCCGATCACACGACAGACACCGGCACATATACTA
CAGTCAGTCTCGACCTCTCCTCAGTACCCTCCACGTCCAGTTTGGCCCCC
CTCCCTCCCTCTCTCCCTCCCTCCCTCCCTC

protein sequence of NO08G00170.1

>NO08G00170.1-protein ID=NO08G00170.1-protein|Name=NO08G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MDFLSDEAAVGTVEAWIGKLFECKPLTEGEVKQLCEKAKEVLTDESNVQP
VQCPVTICGDIHGQFHDLMELFRIGGKAPDTNYLFMGDYVDRGYYSVETV
TLLVALKVRYPERVFILRGNHESRQITQVYGFYDECYRKYGSANVWKLFT
DLFDYLPVTALVDGQIFCLHGGLSPSIDSLDNIRQLDRVQEVPHEGPMCD
LLWSDPDDRVGWGISPRGAGYTFGQDVSEQYNHVNGLSLIARAHQLVMDG
YNWSHDMNVVTIFSAPNYCYRCGNQAAILEVDENLNKLFLQFDPAPRRGE
PEVTRRTPDYFL*

mRNA from alignment at chr8:64112..68335-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00170.1 ID=NO08G00170.1|Name=NO08G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=4224bp|location=Sequence derived from alignment at chr8:64112..68335- (Nannochloropsis oceanica)
ACATCACAGACGGGACTGCGGGGTGTGTTTTCACATCTGCCGTTGGGCGC
AGCCCACCTCCTTCCTCTCCGCTTGCCCTCTCCCTCCTCCCATCTTTCCT
TCCGTACACACACGTGATGGACTTCCTCTCCGACGAAGCGGCGGTTGGCA
CGGTGGAAGCATGGATAGGGAAGCTCTTTGAGTGCAAGCCTTTGACAGAA
GGAGAGGTAAAGCAGTTATGCGAGAAGGTGAGGAGGTCGCGCGTGTGGAA
GGGAGGGTGAAGGGGACGGGAGGGAAGGGACGGCTGATAGGACACATGTA
GGGAGCAATGGAGGGCGGACAGGCAGGACACGAGGCCAGGCCACACCCCT
TCATATTCTCTTTGAAGAAAACATGCTCATGCTTCGAGGACGGGTCTACA
TCAGTCCTTGCCCATTCACTTTCTTCCCTCCCGTCCCCCTCTACCCCCGC
AGGCCAAGGAGGTCCTGACCGACGAGAGTAACGTGCAGCCGGTTCAATGC
CCTGTCACCATTTGCGGGGACATCCACGGGCAGGTAAGTATGTCTAAGTG
TGCCCATGGGTGTGGCTGTGGGTGTGGATGTGGGTGAGTGTTGCGAAAGG
GAAGGAGGGAAGGAGGGAGGGAGGGAGAAGGCAGAACGGCGAGCGCCCCC
CTCAGGTCGCACCATGGTAGTCACTCTTGCCTTCCTTCCCTTCCTTCCTC
CCTCCCTTCCTCCCTTTCTTTCATTCGTCGCTGCCAGTTCCACGACCTGA
TGGAGCTCTTCCGCATCGGCGGCAAGGCGCCCGACACGAACTACCTTTTT
ATGGGCGATTACGTCGACCGAGGCTACTACTCGGTGAGGAGACACCCGCC
TCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTTCCCTC
CTTTCCCTTCTTCCGCTTTCCAATCGTGCTTCTACCGACCTCCTCCATTG
GACGTCTCCTAAGTGTAGGGCATTTTTCGCGGGCGTGGGCGTCGGGATCC
CTCCGTCCCTCTCACCCCGCCCTTCCTCCCTCCCTCCATCCTCCCTCCCT
CCCTTCCACAGGTCGAGACCGTCACCCTCCTCGTGGCCCTCAAGGTCCGC
TATCCCGAGAGGGTTTTCATCCTTCGCGGGAACCACGAGTCAAGACAAAT
CACACAGGTTTGATGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCTACCAACCTTAAGTCCCTCCCTCCTCCCT
CCCTCCCTCCCCTCAGGTGTACGGCTTCTATGACGAGTGCTACCGGAAGT
ACGGTTCGGCCAATGTCTGGAAACTTTTCACAGACCTGTTCGACTACCTT
CCCGTCACTGCCCTGGTGGATGGACAGGTACTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTTCTCCCTTTGTGCCTATTCAATCTGTTTATGGATGTCCC
TGTGTGTCTCTGTAAGTCCGTGAGTTTCCGTGTCTTTCGTAACCTCCCGC
CCTCCTTCTCTTGTGTGAAGGCATAGATAATACCCTAACCTCCTCCCCTG
GCCGCCTCTCGTTCCCGCCGCGAGGTGGGAGCAACGGTCTGCCAGCCCCC
CCTCTTGGACGTTGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGAGACCC
CCCTCCTTCTCCTTTTCTCCACGGAGGAAAAGGATCGAGGGAGGGGGGAA
GCAGGTTTTGGGGTGACTGTTCCACCTCCGATGGGCAGGCCCACCATGAT
CACCGGCTGACAATTCATTGATTTCGTTCGCCCCACCCATCACCGCGTTC
TCCTTCGTTTGCCCACTAAGATATAACAATCGTAATAATTTACAATAATC
ATGATAAATGATAATAATTATAATAATGTGACAGACTTGTAGATGACATT
GATACATCCATCGTCGGCTTTCTGGCCCTCTTACCTACAATATTTTCATT
CTCACAATCCCTCCCTCCCCCCCTCCCTCCCTCAAGATCTTCTGCCTTCA
CGGCGGCCTCTCCCCCTCCATCGACTCCCTCGACAACATCCGCCAGCTCG
ATCGCGTCCAAGAGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
GGTTCCCACACGTCCCCTGTTTCCAATCCTCCCTCCCTCCCTCCCTAGGT
GCCTCATGAAGGTCCTATGTGCGACTTGCTGTGGTCAGACCCCGACGACC
GCGTTGGATGGGGCATCTCGCCACGGTACGCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTACCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCTTCCCTCCCCTCCTGCTCCTGCCCCTCACT
AGTCGAGTCTCACACACCCCCTCCCTCCCTCCCTCCCGCCCGCCCTCCCG
CCCTACTGCCCTCCCCAGTGGCGCCGGGTACACCTTCGGCCAGGATGTCT
CGGAGCAGTACAACCACGTGAACGGCCTCTCCCTCATAGCCCGGGCCCAC
CAGCTCGTGATGGATGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCTTCCCACCAGCAGAGG
AGAGGAATGCGGCTGGCTCGATGTGGTACTTGGGGGGCATTGATAAGAAA
GCCGAGTCCTAGCCTTGGGCCCGCGTGATCCAACCCTCAATTAGAAATGA
TCTAATGCTCAATTAGGATCCCTCTCATGCTCAATTAGGTCTAATTCAGT
CCTTTATTAGATTTAATCTCATCCTCAATTAGGATAAATCCAAATTTCTA
TAAGGATTACGGGTAGGGGGAGAGATAGGGTCGAGGGTAGGATTCCTGGT
GTCAGTACACACACGAAGGAAGGAATTGCCATGGCATGGAACAGGCGTTC
AATCCACCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGGT
TACAATTGGTCCCACGACATGAACGTGGTGACGATCTTCTCCGCCCCCAA
CTACTGCTACCGCTGCGGCAACCAAGCGGCCATCCTGGAGGTGGACGAGA
ACCTGAACAAGCTCTTGTACGTACCCCGCCCGCCCTCCCTCCCTCCCCCC
TCCCTCCCTCTTTCACTTTCTACCACGACACGAACTCGCCCTCACCTTCC
CTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCCTCCCTCCTTCCTTTCCTCCCAGCCTGCAATTCGACCCTGCCCCTCGA
AGAGGCGAGCCCGAGGTGACCAGACGGACGCCTGACTACTTCTTATAGGA
AGGAGGGGGGGAGGGAGCGAGGGAGAGAGGGAGGGAGGGGTAGAAGAAGA
AAGTTTTCTGCTCTTTTTCTCCCTCTGGATGCGCTGTTCCAGCGCCGAGG
GAGGGAGGTAGGGAAGGGCGAAAGAAGGACTACTGGAAGAACAGATGTTC
ACTGCCTGAAGAAATGGAGAAAGGGCGAGGGATGAGGATCAGAGAAAGGG
AAAAGGATTCAAAGAAAAGTGGGACTGGCCCATACCTCTTTTACTCTTCA
TTCTGGCTTTCGTTGTCATTCTTTATTTTTTATGAAAAATCAGTCCTGCT
TGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGCGTGTGTGTG
TGTGCGTGTGAGCGCCTCTCAAAACTGTCAAAACGTGTCGCCATACCGGC
TTTCATCTTCTGCACTTCCTACCCCTCCCCCTACCGCATGTCTGATCTCT
TGCTTGAAAATATCATGATGACCGGTACTCTTTTTCTTCTGTGTGCCTGT
GTGCCATATTTCCTCCTTTCTATTTCTTCTTCTTCTCCTCCTCTTCCCAT
GATCTACTCTTCATGCGATCTCTACATCGATCCACCTTTTTTCTCTCCTT
CTCTGACTTCCTACCTATCTCCTGAGTGACCGATGTGTACCGTCTTCCTA
ATCAAACCAACCTTGGGCTCATATGATATCCTCATTCCCTTCTTTCTCAC
CCTCCCTCCTTTCCTCCTCCTCCTCCTCCTCCCACTCGTAGCATTCAATT
TCCCCTCCATCCGATCACACGACAGACACCGGCACATATACTACAGTCAG
TCTCGACCTCTCCTCAGTACCCTCCACGTCCAGTTTGGCCCCCCTCCCTC
CCTCTCTCCCTCCCTCCCTCCCTC

Coding sequence (CDS) from alignment at chr8:64112..68335-

>NO08G00170.1 ID=NO08G00170.1|Name=NO08G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr8:64112..68335- (Nannochloropsis oceanica)
ATGGACTTCCTCTCCGACGAAGCGGCGGTTGGCACGGTGGAAGCATGGAT
AGGGAAGCTCTTTGAGTGCAAGCCTTTGACAGAAGGAGAGGTAAAGCAGT
TATGCGAGAAGGCCAAGGAGGTCCTGACCGACGAGAGTAACGTGCAGCCG
GTTCAATGCCCTGTCACCATTTGCGGGGACATCCACGGGCAGTTCCACGA
CCTGATGGAGCTCTTCCGCATCGGCGGCAAGGCGCCCGACACGAACTACC
TTTTTATGGGCGATTACGTCGACCGAGGCTACTACTCGGTCGAGACCGTC
ACCCTCCTCGTGGCCCTCAAGGTCCGCTATCCCGAGAGGGTTTTCATCCT
TCGCGGGAACCACGAGTCAAGACAAATCACACAGGTGTACGGCTTCTATG
ACGAGTGCTACCGGAAGTACGGTTCGGCCAATGTCTGGAAACTTTTCACA
GACCTGTTCGACTACCTTCCCGTCACTGCCCTGGTGGATGGACAGATCTT
CTGCCTTCACGGCGGCCTCTCCCCCTCCATCGACTCCCTCGACAACATCC
GCCAGCTCGATCGCGTCCAAGAGGTGCCTCATGAAGGTCCTATGTGCGAC
TTGCTGTGGTCAGACCCCGACGACCGCGTTGGATGGGGCATCTCGCCACG
TGGCGCCGGGTACACCTTCGGCCAGGATGTCTCGGAGCAGTACAACCACG
TGAACGGCCTCTCCCTCATAGCCCGGGCCCACCAGCTCGTGATGGATGGT
TACAATTGGTCCCACGACATGAACGTGGTGACGATCTTCTCCGCCCCCAA
CTACTGCTACCGCTGCGGCAACCAAGCGGCCATCCTGGAGGTGGACGAGA
ACCTGAACAAGCTCTTCCTGCAATTCGACCCTGCCCCTCGAAGAGGCGAG
CCCGAGGTGACCAGACGGACGCCTGACTACTTCTTATAG

Synonyms

Publications