NO08G00140.4, NO08G00140.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00140.4
Unique NameNO08G00140.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1633
Alignment locationchr8:56105..57965 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:56105..57965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00140.4 vs.
Match: CBN74712.1 (3-demethylubiquinone-9 3-methyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 87.0 bits (214), Expect = 8.400e-14
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 0 
Query:   33 RRPRHFFSSRSSVHDAEVEKFNAYGQGWWDDPSGRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTNIGTSNDSSGPSTKKTLQGVRILDVGCGGGLLSEALARYGYQL 143
            R  RH   SR+++ + E+EKF    + WW+ P+ R GAGPLH++N  RV+YI+ + G SL  A P     T            L G+R LDVGCGGGLLSE+LAR G ++
Sbjct:   61 RESRH---SRANISEEELEKFRHLEKEWWN-PASRQGAGPLHSMNVTRVQYIVRQVGSSLPEASPHWGSAT-----------PLAGLRALDVGCGGGLLSESLARLGAEV 155
The following BLAST results are available for this feature:
BLAST of NO08G00140.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74712.18.400e-1444.553-demethylubiquinone-9 3-methyltransferase [Ectoca... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00140NO08G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00140.4NO08G00140.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00140.4.cds1NO08G00140.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00140.4.cds2NO08G00140.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00140.4.cds3NO08G00140.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00140.4 ID=NO08G00140.4|Name=NO08G00140.4|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTCTCCTC
GCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTACGGCC
AAGGGTGGTGGGACGACCCGAGCGGCCGTACGGGCGCAGGGCCCCTTCAC
GCCTTGAATCCCGTCCGGGTAAAATACATCCTCAATAAATGCGGTCGAAG
CCTCAATGCCGCACCTCCCAGCACCAACATTGGCACCAGCAACGATAGTA
GCGGTCCATCGACGAAGAAGACCTTGCAAGGCGTCCGGATACTTGACGTG
GGTTGTGGCGGCGGGCTCTTGTCAGAGGCACTCGCACGGTACGGCTATCA
ATTGGGTTATGGTGATGGGAAGATGGGGACACAAGAGGTTTTTTGCGCAG
ACTGGCCCATTCGTTCTGTCTTCTTTCTTCCCTCCTCATCATCCCTCTCC
AGCCTCGGCGCCTCCGTCACAGGCATCGACCCGGCAGTCGGGAACATCGA
CGTGGCCCGAAGCCACGCCGCCGTGGACCCCCGCACCCGGGGCATCAAAT
ACGAGCACGCCGCGGTGGAGGACTTTTTGGGTAGGGAGGGAGAGTGGATA
GGGAGAGGGAAGACTCTGTTTTGTTCCTCGTCGTCTGTCCGTGACTGATA
ATCAGCGACTTTTTCCTCTTTTCTTTTCTCCCTCCCTCCCTCCCTCCCCA
TCCCCTTCGTCTAGCTTCAGGTGAGCGCTTCGATGCGGTAGTATCGTCAG
AAGTGATCGAGCACGTGGCTGCACCCGATGCCTTCGTCAAATCCTTGGCG
GGCATGCTAGCAGCTGAAGAAGAGGCAGGAGGTAAGAGCCGCGACGGGGG
GCACCTGGTCTTGACCACCATCAATCGCACCGCCAAGGCGTATCTCCTCG
CCATCTTGGGAGCCGAGTACATCGTGCGCATGGTGCCCAAAGGTAAGTAC
ACTCGTTTTTTTTTCCATAGACTTCATTCTGCCTTCGCTTTCCAAGGTCC
TCCTTCCTCCTCCCCTCCTCCTTGCGGTTTTCCTACAATCAATTCCATCT
TGTTGTTCCGCTCTAGGCACGTCAAGACAAAGGCAACGTCCTTGCTTGTC
AAGTAAAGATAGCTCACCACTTAACCTCTCTCTTGTTTTCCCTTTCCCTC
TTCTTTCCTTTCCTCCCCTCTCCCCTCCCGCCTTCCCTCTCTCTCTTCCT
CCTCCATCCCTAGGAACACACGAATGGAGCAAGTTTCTACAACCCCAAGA
AGTGGCTCGGATGGGCCGCGCGGCCGGCCTCCGGGTTGAGGATGTGTGCG
GGATGATTTACAACCCATTTAATAACACGTGGAAGCTTGAGAAGGATGAT
ATTGACGTGAATTATGCCATACACTTGGTCCAGGATGAGAGGAAGGGAAC
GTAATATGTAGGGGTGTACGTGGTGCTCCGGGGATTAGAGACGGAGGATT
GGTTGGTAGAGCGTGAAAGTGATCGGCTACTAAGGAAAGGCAAGGACTAC
ACAACGTTTCATGAAGTGATTACGCGATGATCT
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protein sequence of NO08G00140.4

>NO08G00140.4-protein ID=NO08G00140.4-protein|Name=NO08G00140.4|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MRHRLVFTLPRYWPPQSLQASSLAATSSTLSRRRPRHFFSSRSSVHDAEV
EKFNAYGQGWWDDPSGRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTN
IGTSNDSSGPSTKKTLQGVRILDVGCGGGLLSEALARYGYQLGYGDGKMG
TQEVFCADWPIRSVFFLPSSSSLSSLGASVTGIDPAVGNIDVARSHAAVD
PRTRGIKYEHAAVEDFLGREGEWIGRGKTLFCSSSSVRD*
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mRNA from alignment at chr8:56105..57965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00140.4 ID=NO08G00140.4|Name=NO08G00140.4|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at chr8:56105..57965- (Nannochloropsis oceanica)
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGGTGCGTGCCCCTTGACCACCATGAGGCACACGCAGGACC
CCAATCCCGCTTCATTAACACTGGCTTACCCACCCTCACTTGCTTCCTTC
TCTTTTTTTTTCTAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTC
TCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTA
CGGCCAAGGGTGGTGGGACGACCCGAGCGGCCGTACGGGCGCAGGTACGT
TTTTCCCCTCTGTAGACTGCATCCTTTTCCTTCATTCAATAATCACCATA
GTGTGATGCGTTTCTTCCACTCTGCCCGGCTTCCCAATCCCACCTCCCCC
CCCTTTACCCGTTACAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAA
AATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGC
ACCAACATTGGCACCAGCAACGATAGTAGCGGTCCATCGACGAAGAAGAC
CTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGT
CAGAGGCACTCGCACGGTACGGCTATCAATTGGGTTATGGTGATGGGAAG
ATGGGGACACAAGAGGTTTTTTGCGCAGACTGGCCCATTCGTTCTGTCTT
CTTTCTTCCCTCCTCATCATCCCTCTCCAGCCTCGGCGCCTCCGTCACAG
GCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCC
GTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGA
CTTTTTGGGTAGGGAGGGAGAGTGGATAGGGAGAGGGAAGACTCTGTTTT
GTTCCTCGTCGTCTGTCCGTGACTGATAATCAGCGACTTTTTCCTCTTTT
CTTTTCTCCCTCCCTCCCTCCCTCCCCATCCCCTTCGTCTAGCTTCAGGT
GAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTGC
ACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAAG
AGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCATC
AATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACAT
CGTGCGCATGGTGCCCAAAGGTAAGTACACTCGTTTTTTTTTCCATAGAC
TTCATTCTGCCTTCGCTTTCCAAGGTCCTCCTTCCTCCTCCCCTCCTCCT
TGCGGTTTTCCTACAATCAATTCCATCTTGTTGTTCCGCTCTAGGCACGT
CAAGACAAAGGCAACGTCCTTGCTTGTCAAGTAAAGATAGCTCACCACTT
AACCTCTCTCTTGTTTTCCCTTTCCCTCTTCTTTCCTTTCCTCCCCTCTC
CCCTCCCGCCTTCCCTCTCTCTCTTCCTCCTCCATCCCTAGGAACACACG
AATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGCG
GCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATTTACAACCCATTTAA
TAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATTATGCCATAC
ACTTGGTCCAGGATGAGAGGAAGGGAACGTAATATGTAGGGGTGTACGTG
GTGCTCCGGGGATTAGAGACGGAGGATTGGTTGGTAGAGCGTGAAAGTGA
TCGGCTACTAAGGAAAGGCAAGGACTACACAACGTTTCATGAAGTGATTA
CGCGATGATCT
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Coding sequence (CDS) from alignment at chr8:56105..57965-

>NO08G00140.4 ID=NO08G00140.4|Name=NO08G00140.4|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr8:56105..57965- (Nannochloropsis oceanica)
ATGCGTCATAGGCTTGTCTTCACTCTGCCGCGGTACTGGCCACCGCAGTC
TCTTCAAGCTTCATCACTTGCCGCCACATCAAGTACTCTTTCACGGAGAC
GCCCGCGCCACTTCTTCTCCTCGCGCTCGTCAGTGCACGATGCGGAGGTC
GAAAAGTTCAACGCTTACGGCCAAGGGTGGTGGGACGACCCGAGCGGCCG
TACGGGCGCAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAAAATACA
TCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGCACCAAC
ATTGGCACCAGCAACGATAGTAGCGGTCCATCGACGAAGAAGACCTTGCA
AGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGTCAGAGG
CACTCGCACGGTACGGCTATCAATTGGGTTATGGTGATGGGAAGATGGGG
ACACAAGAGGTTTTTTGCGCAGACTGGCCCATTCGTTCTGTCTTCTTTCT
TCCCTCCTCATCATCCCTCTCCAGCCTCGGCGCCTCCGTCACAGGCATCG
ACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCCGTGGAC
CCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGACTTTTT
GGGTAGGGAGGGAGAGTGGATAGGGAGAGGGAAGACTCTGTTTTGTTCCT
CGTCGTCTGTCCGTGACTGA
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Synonyms
Publications