NO08G00140.3, NO08G00140.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00140.3
Unique Name	NO08G00140.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1228
Alignment location	chr8:56105..57965 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:56105..57965 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00140.3 vs.
Match: CBN74712.1 (3-demethylubiquinone-9 3-methyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 202.2 bits (513), Expect = 2.700e-48
Identity = 124/316 (39.24%), Postives = 168/316 (53.16%), Query Frame = 0

Query:   33 RRPRHFFSSRSSVHDAEVEKFNAYGQGWWDDPSGRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTNIGTSNDSSGPSTKKTLQGVRILDVGCGGGLLSEALARYGYQLGYGDGKMGTQEVFCADWPIRSVFFLPSSSSLSSLGASVTGIDPAVGNIDVARSHAAVDPRTRGIKYEHAAVEDFLASGERFDAVVSSEVIEHVAAPDAFVKSLAGMLAAEEEAGGKSRDGGHLVLTTINRTAKAYLLAILGAEYIVRMVPKGTHEWSKFLQPQEVARMGRAAGLRVE--DVCGMIYNPFNNTWKLEKDDIDVNYAI 347
            R  RH   SR+++ + E+EKF    + WW+ P+ R GAGPLH++N  RV+YI+ + G SL  A P     T            L G+R LDV                  G G G +                    S SL+ LGA V G+DP+  N+ VA +HA  DP TR I+YE    E+    GE+FD V S EVIEHV  P  FV SLA +          +R GG L ++TINRTAK++ LAI+GAEY+  +VP GTH+W KF+ P+++A M +A G   E  + CG++YNP +  WK    D+DVNY +
Sbjct:   61 RESRH---SRANISEEELEKFRHLEKEWWN-PASRQGAGPLHSMNVTRVQYIVRQVGSSLPEASPHWGSAT-----------PLAGLRALDV------------------GCGGGLL--------------------SESLARLGAEVVGVDPSPENVAVASAHAQGDPLTRTIRYEATTAEELENRGEQFDLVTSLEVIEHVEDPAGFVSSLASL----------TRPGGMLAMSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLQAHGFPGELVETCGLMYNPVSGRWKENPGDLDVNYIV 313

The following BLAST results are available for this feature:

BLAST of NO08G00140.3 vs.

BLAST of NO08G00140.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN74712.1	2.700e-48	39.24	3-demethylubiquinone-9 3-methyltransferase [Ectoca...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00140	NO08G00140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00140.3	NO08G00140.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00140.3.cds1	NO08G00140.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00140.3.cds2	NO08G00140.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00140.3.cds3	NO08G00140.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00140.3.cds4	NO08G00140.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00140.3.cds5	NO08G00140.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:56105..57965-
coding sequence from alignment at chr8:56105..57965-

mRNA sequence

>NO08G00140.3 ID=NO08G00140.3|Name=NO08G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTCTCCTC
GCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTACGGCC
AAGGGTGGTGGGACGACCCGAGCGGCCGTACGGGCGCAGGGCCCCTTCAC
GCCTTGAATCCCGTCCGGGTAAAATACATCCTCAATAAATGCGGTCGAAG
CCTCAATGCCGCACCTCCCAGCACCAACATTGGCACCAGCAACGATAGTA
GCGGTCCATCGACGAAGAAGACCTTGCAAGGCGTCCGGATACTTGACGTG
GGTTGTGGCGGCGGGCTCTTGTCAGAGGCACTCGCACGGTACGGCTATCA
ATTGGGTTATGGTGATGGGAAGATGGGGACACAAGAGGTTTTTTGCGCAG
ACTGGCCCATTCGTTCTGTCTTCTTTCTTCCCTCCTCATCATCCCTCTCC
AGCCTCGGCGCCTCCGTCACAGGCATCGACCCGGCAGTCGGGAACATCGA
CGTGGCCCGAAGCCACGCCGCCGTGGACCCCCGCACCCGGGGCATCAAAT
ACGAGCACGCCGCGGTGGAGGACTTTTTGGCTTCAGGTGAGCGCTTCGAT
GCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTGCACCCGATGCCTT
CGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAAGAGGCAGGAGGTA
AGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCATCAATCGCACCGCC
AAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACATCGTGCGCATGGT
GCCCAAAGGAACACACGAATGGAGCAAGTTTCTACAACCCCAAGAAGTGG
CTCGGATGGGCCGCGCGGCCGGCCTCCGGGTTGAGGATGTGTGCGGGATG
ATTTACAACCCATTTAATAACACGTGGAAGCTTGAGAAGGATGATATTGA
CGTGAATTATGCCATACACTTGGTCCAGGATGAGAGGAAGGGAACGTAAT
ATGTAGGGGTGTACGTGGTGCTCCGGGGATTAGAGACGGAGGATTGGTTG
GTAGAGCGTGAAAGTGATCGGCTACTAAGGAAAGGCAAGGACTACACAAC
GTTTCATGAAGTGATTACGCGATGATCT

protein sequence of NO08G00140.3

>NO08G00140.3-protein ID=NO08G00140.3-protein|Name=NO08G00140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MRHRLVFTLPRYWPPQSLQASSLAATSSTLSRRRPRHFFSSRSSVHDAEV
EKFNAYGQGWWDDPSGRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTN
IGTSNDSSGPSTKKTLQGVRILDVGCGGGLLSEALARYGYQLGYGDGKMG
TQEVFCADWPIRSVFFLPSSSSLSSLGASVTGIDPAVGNIDVARSHAAVD
PRTRGIKYEHAAVEDFLASGERFDAVVSSEVIEHVAAPDAFVKSLAGMLA
AEEEAGGKSRDGGHLVLTTINRTAKAYLLAILGAEYIVRMVPKGTHEWSK
FLQPQEVARMGRAAGLRVEDVCGMIYNPFNNTWKLEKDDIDVNYAIHLVQ
DERKGT*

mRNA from alignment at chr8:56105..57965-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00140.3 ID=NO08G00140.3|Name=NO08G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at chr8:56105..57965- (Nannochloropsis oceanica)
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGGTGCGTGCCCCTTGACCACCATGAGGCACACGCAGGACC
CCAATCCCGCTTCATTAACACTGGCTTACCCACCCTCACTTGCTTCCTTC
TCTTTTTTTTTCTAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTC
TCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTA
CGGCCAAGGGTGGTGGGACGACCCGAGCGGCCGTACGGGCGCAGGTACGT
TTTTCCCCTCTGTAGACTGCATCCTTTTCCTTCATTCAATAATCACCATA
GTGTGATGCGTTTCTTCCACTCTGCCCGGCTTCCCAATCCCACCTCCCCC
CCCTTTACCCGTTACAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAA
AATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGC
ACCAACATTGGCACCAGCAACGATAGTAGCGGTCCATCGACGAAGAAGAC
CTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGT
CAGAGGCACTCGCACGGTACGGCTATCAATTGGGTTATGGTGATGGGAAG
ATGGGGACACAAGAGGTTTTTTGCGCAGACTGGCCCATTCGTTCTGTCTT
CTTTCTTCCCTCCTCATCATCCCTCTCCAGCCTCGGCGCCTCCGTCACAG
GCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCC
GTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGA
CTTTTTGGGTAGGGAGGGAGAGTGGATAGGGAGAGGGAAGACTCTGTTTT
GTTCCTCGTCGTCTGTCCGTGACTGATAATCAGCGACTTTTTCCTCTTTT
CTTTTCTCCCTCCCTCCCTCCCTCCCCATCCCCTTCGTCTAGCTTCAGGT
GAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTGC
ACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAAG
AGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCATC
AATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACAT
CGTGCGCATGGTGCCCAAAGGTAAGTACACTCGTTTTTTTTTCCATAGAC
TTCATTCTGCCTTCGCTTTCCAAGGTCCTCCTTCCTCCTCCCCTCCTCCT
TGCGGTTTTCCTACAATCAATTCCATCTTGTTGTTCCGCTCTAGGCACGT
CAAGACAAAGGCAACGTCCTTGCTTGTCAAGTAAAGATAGCTCACCACTT
AACCTCTCTCTTGTTTTCCCTTTCCCTCTTCTTTCCTTTCCTCCCCTCTC
CCCTCCCGCCTTCCCTCTCTCTCTTCCTCCTCCATCCCTAGGAACACACG
AATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGCG
GCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATTTACAACCCATTTAA
TAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATTATGCCATAC
ACTTGGTCCAGGATGAGAGGAAGGGAACGTAATATGTAGGGGTGTACGTG
GTGCTCCGGGGATTAGAGACGGAGGATTGGTTGGTAGAGCGTGAAAGTGA
TCGGCTACTAAGGAAAGGCAAGGACTACACAACGTTTCATGAAGTGATTA
CGCGATGATCT

Coding sequence (CDS) from alignment at chr8:56105..57965-

>NO08G00140.3 ID=NO08G00140.3|Name=NO08G00140.3|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr8:56105..57965- (Nannochloropsis oceanica)
ATGCGTCATAGGCTTGTCTTCACTCTGCCGCGGTACTGGCCACCGCAGTC
TCTTCAAGCTTCATCACTTGCCGCCACATCAAGTACTCTTTCACGGAGAC
GCCCGCGCCACTTCTTCTCCTCGCGCTCGTCAGTGCACGATGCGGAGGTC
GAAAAGTTCAACGCTTACGGCCAAGGGTGGTGGGACGACCCGAGCGGCCG
TACGGGCGCAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAAAATACA
TCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGCACCAAC
ATTGGCACCAGCAACGATAGTAGCGGTCCATCGACGAAGAAGACCTTGCA
AGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGTCAGAGG
CACTCGCACGGTACGGCTATCAATTGGGTTATGGTGATGGGAAGATGGGG
ACACAAGAGGTTTTTTGCGCAGACTGGCCCATTCGTTCTGTCTTCTTTCT
TCCCTCCTCATCATCCCTCTCCAGCCTCGGCGCCTCCGTCACAGGCATCG
ACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCCGTGGAC
CCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGACTTTTT
GGCTTCAGGTGAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGC
ACGTGGCTGCACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCA
GCTGAAGAAGAGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTT
GACCACCATCAATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAG
CCGAGTACATCGTGCGCATGGTGCCCAAAGGAACACACGAATGGAGCAAG
TTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGCGGCCGGCCTCCG
GGTTGAGGATGTGTGCGGGATGATTTACAACCCATTTAATAACACGTGGA
AGCTTGAGAAGGATGATATTGACGTGAATTATGCCATACACTTGGTCCAG
GATGAGAGGAAGGGAACGTAA

Synonyms

Publications