NO08G00140.2, NO08G00140.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00140.2
Unique NameNO08G00140.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1219
Alignment locationchr8:56105..57965 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:56105..57965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00140.2 vs.
Match: CBN74712.1 (3-demethylubiquinone-9 3-methyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 240.7 bits (613), Expect = 6.700e-60
Identity = 130/278 (46.76%), Postives = 173/278 (62.23%), Query Frame = 0 
Query:   68 RRPRHFFSSRSSVHDAEVEKFNAYGQGWWDDPSGRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTNIGTSNDSSGPSTKKTLQGVRILDVGCGGGLLSEALARLGASVTGIDPAVGNIDVARSHAAVDPRTRGIKYEHAAVEDFLASGERFDAVVSSEVIEHVAAPDAFVKSLAGMLAAEEEAGGKSRDGGHLVLTTINRTAKAYLLAILGAEYIVRMVPKGTHEWSKFLQPQEVARMGRAAGLRVE--DVCGMIYNPFNNTWKLEKDDIDVNYAI 344
            R  RH   SR+++ + E+EKF    + WW+ P+ R GAGPLH++N  RV+YI+ + G SL  A P     T            L G+R LDVGCGGGLLSE+LARLGA V G+DP+  N+ VA +HA  DP TR I+YE    E+    GE+FD V S EVIEHV  P  FV SLA +          +R GG L ++TINRTAK++ LAI+GAEY+  +VP GTH+W KF+ P+++A M +A G   E  + CG++YNP +  WK    D+DVNY +
Sbjct:   61 RESRH---SRANISEEELEKFRHLEKEWWN-PASRQGAGPLHSMNVTRVQYIVRQVGSSLPEASPHWGSATP-----------LAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAQGDPLTRTIRYEATTAEELENRGEQFDLVTSLEVIEHVEDPAGFVSSLASL----------TRPGGMLAMSTINRTAKSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLQAHGFPGELVETCGLMYNPVSGRWKENPGDLDVNYIV 313
The following BLAST results are available for this feature:
BLAST of NO08G00140.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74712.16.700e-6046.763-demethylubiquinone-9 3-methyltransferase [Ectoca... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00140NO08G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00140.2NO08G00140.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00140.2.cds1NO08G00140.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00140.2.cds2NO08G00140.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00140.2.cds3NO08G00140.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00140.2.cds4NO08G00140.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00140.2.cds5NO08G00140.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00140.2 ID=NO08G00140.2|Name=NO08G00140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGGTGCGTGCCCCTTGACCACCATGAGGCACACGCAGGACC
CCAATCCCGCTTCATTAACACTGGCTTACCCACCCTCACTTGCTTCCTTC
TCTTTTTTTTTCTAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTC
TCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTA
CGGCCAAGGGTGGTGGGACGACCCGAGCGGCCGTACGGGCGCAGGGCCCC
TTCACGCCTTGAATCCCGTCCGGGTAAAATACATCCTCAATAAATGCGGT
CGAAGCCTCAATGCCGCACCTCCCAGCACCAACATTGGCACCAGCAACGA
TAGTAGCGGTCCATCGACGAAGAAGACCTTGCAAGGCGTCCGGATACTTG
ACGTGGGTTGTGGCGGCGGGCTCTTGTCAGAGGCACTCGCACGCCTCGGC
GCCTCCGTCACAGGCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCG
AAGCCACGCCGCCGTGGACCCCCGCACCCGGGGCATCAAATACGAGCACG
CCGCGGTGGAGGACTTTTTGGCTTCAGGTGAGCGCTTCGATGCGGTAGTA
TCGTCAGAAGTGATCGAGCACGTGGCTGCACCCGATGCCTTCGTCAAATC
CTTGGCGGGCATGCTAGCAGCTGAAGAAGAGGCAGGAGGTAAGAGCCGCG
ACGGGGGGCACCTGGTCTTGACCACCATCAATCGCACCGCCAAGGCGTAT
CTCCTCGCCATCTTGGGAGCCGAGTACATCGTGCGCATGGTGCCCAAAGG
AACACACGAATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGG
GCCGCGCGGCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATTTACAAC
CCATTTAATAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATTA
TGCCATACACTTGGTCCAGGATGAGAGGAAGGGAACGTAATATGTAGGGG
TGTACGTGGTGCTCCGGGGATTAGAGACGGAGGATTGGTTGGTAGAGCGT
GAAAGTGATCGGCTACTAAGGAAAGGCAAGGACTACACAACGTTTCATGA
AGTGATTACGCGATGATCT
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protein sequence of NO08G00140.2

>NO08G00140.2-protein ID=NO08G00140.2-protein|Name=NO08G00140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MRHRLVFTLPRYWPPQSLQASSLAATSRCVPLDHHEAHAGPQSRFINTGL
PTLTCFLLFFFLSTLSRRRPRHFFSSRSSVHDAEVEKFNAYGQGWWDDPS
GRTGAGPLHALNPVRVKYILNKCGRSLNAAPPSTNIGTSNDSSGPSTKKT
LQGVRILDVGCGGGLLSEALARLGASVTGIDPAVGNIDVARSHAAVDPRT
RGIKYEHAAVEDFLASGERFDAVVSSEVIEHVAAPDAFVKSLAGMLAAEE
EAGGKSRDGGHLVLTTINRTAKAYLLAILGAEYIVRMVPKGTHEWSKFLQ
PQEVARMGRAAGLRVEDVCGMIYNPFNNTWKLEKDDIDVNYAIHLVQDER
KGT*
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mRNA from alignment at chr8:56105..57965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00140.2 ID=NO08G00140.2|Name=NO08G00140.2|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at chr8:56105..57965- (Nannochloropsis oceanica)
ACAGCAAACGAGCTAAGCGGCAAGCGCGATGCGTCATAGGCTTGTCTTCA
CTCTGCCGCGGTACTGGCCACCGCAGTCTCTTCAAGCTTCATCACTTGCC
GCCACATCAAGGTGCGTGCCCCTTGACCACCATGAGGCACACGCAGGACC
CCAATCCCGCTTCATTAACACTGGCTTACCCACCCTCACTTGCTTCCTTC
TCTTTTTTTTTCTAAGTACTCTTTCACGGAGACGCCCGCGCCACTTCTTC
TCCTCGCGCTCGTCAGTGCACGATGCGGAGGTCGAAAAGTTCAACGCTTA
CGGCCAAGGGTGGTGGGACGACCCGAGCGGCCGTACGGGCGCAGGTACGT
TTTTCCCCTCTGTAGACTGCATCCTTTTCCTTCATTCAATAATCACCATA
GTGTGATGCGTTTCTTCCACTCTGCCCGGCTTCCCAATCCCACCTCCCCC
CCCTTTACCCGTTACAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAA
AATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGC
ACCAACATTGGCACCAGCAACGATAGTAGCGGTCCATCGACGAAGAAGAC
CTTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGT
CAGAGGCACTCGCACGGTACGGCTATCAATTGGGTTATGGTGATGGGAAG
ATGGGGACACAAGAGGTTTTTTGCGCAGACTGGCCCATTCGTTCTGTCTT
CTTTCTTCCCTCCTCATCATCCCTCTCCAGCCTCGGCGCCTCCGTCACAG
GCATCGACCCGGCAGTCGGGAACATCGACGTGGCCCGAAGCCACGCCGCC
GTGGACCCCCGCACCCGGGGCATCAAATACGAGCACGCCGCGGTGGAGGA
CTTTTTGGGTAGGGAGGGAGAGTGGATAGGGAGAGGGAAGACTCTGTTTT
GTTCCTCGTCGTCTGTCCGTGACTGATAATCAGCGACTTTTTCCTCTTTT
CTTTTCTCCCTCCCTCCCTCCCTCCCCATCCCCTTCGTCTAGCTTCAGGT
GAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTGC
ACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAAG
AGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCATC
AATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACAT
CGTGCGCATGGTGCCCAAAGGTAAGTACACTCGTTTTTTTTTCCATAGAC
TTCATTCTGCCTTCGCTTTCCAAGGTCCTCCTTCCTCCTCCCCTCCTCCT
TGCGGTTTTCCTACAATCAATTCCATCTTGTTGTTCCGCTCTAGGCACGT
CAAGACAAAGGCAACGTCCTTGCTTGTCAAGTAAAGATAGCTCACCACTT
AACCTCTCTCTTGTTTTCCCTTTCCCTCTTCTTTCCTTTCCTCCCCTCTC
CCCTCCCGCCTTCCCTCTCTCTCTTCCTCCTCCATCCCTAGGAACACACG
AATGGAGCAAGTTTCTACAACCCCAAGAAGTGGCTCGGATGGGCCGCGCG
GCCGGCCTCCGGGTTGAGGATGTGTGCGGGATGATTTACAACCCATTTAA
TAACACGTGGAAGCTTGAGAAGGATGATATTGACGTGAATTATGCCATAC
ACTTGGTCCAGGATGAGAGGAAGGGAACGTAATATGTAGGGGTGTACGTG
GTGCTCCGGGGATTAGAGACGGAGGATTGGTTGGTAGAGCGTGAAAGTGA
TCGGCTACTAAGGAAAGGCAAGGACTACACAACGTTTCATGAAGTGATTA
CGCGATGATCT
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Coding sequence (CDS) from alignment at chr8:56105..57965-

>NO08G00140.2 ID=NO08G00140.2|Name=NO08G00140.2|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr8:56105..57965- (Nannochloropsis oceanica)
ATGCGTCATAGGCTTGTCTTCACTCTGCCGCGGTACTGGCCACCGCAGTC
TCTTCAAGCTTCATCACTTGCCGCCACATCAAGGTGCGTGCCCCTTGACC
ACCATGAGGCACACGCAGGACCCCAATCCCGCTTCATTAACACTGGCTTA
CCCACCCTCACTTGCTTCCTTCTCTTTTTTTTTCTAAGTACTCTTTCACG
GAGACGCCCGCGCCACTTCTTCTCCTCGCGCTCGTCAGTGCACGATGCGG
AGGTCGAAAAGTTCAACGCTTACGGCCAAGGGTGGTGGGACGACCCGAGC
GGCCGTACGGGCGCAGGGCCCCTTCACGCCTTGAATCCCGTCCGGGTAAA
ATACATCCTCAATAAATGCGGTCGAAGCCTCAATGCCGCACCTCCCAGCA
CCAACATTGGCACCAGCAACGATAGTAGCGGTCCATCGACGAAGAAGACC
TTGCAAGGCGTCCGGATACTTGACGTGGGTTGTGGCGGCGGGCTCTTGTC
AGAGGCACTCGCACGCCTCGGCGCCTCCGTCACAGGCATCGACCCGGCAG
TCGGGAACATCGACGTGGCCCGAAGCCACGCCGCCGTGGACCCCCGCACC
CGGGGCATCAAATACGAGCACGCCGCGGTGGAGGACTTTTTGGCTTCAGG
TGAGCGCTTCGATGCGGTAGTATCGTCAGAAGTGATCGAGCACGTGGCTG
CACCCGATGCCTTCGTCAAATCCTTGGCGGGCATGCTAGCAGCTGAAGAA
GAGGCAGGAGGTAAGAGCCGCGACGGGGGGCACCTGGTCTTGACCACCAT
CAATCGCACCGCCAAGGCGTATCTCCTCGCCATCTTGGGAGCCGAGTACA
TCGTGCGCATGGTGCCCAAAGGAACACACGAATGGAGCAAGTTTCTACAA
CCCCAAGAAGTGGCTCGGATGGGCCGCGCGGCCGGCCTCCGGGTTGAGGA
TGTGTGCGGGATGATTTACAACCCATTTAATAACACGTGGAAGCTTGAGA
AGGATGATATTGACGTGAATTATGCCATACACTTGGTCCAGGATGAGAGG
AAGGGAACGTAA
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Synonyms
Publications