NO08G00100.1, NO08G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00100.1
Unique NameNO08G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr8:39771..41654 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:39771..41654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G00100.1 vs.
Match: CBN77673.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.1 bits (362), Expect = 1.500e-30
Identity = 164/549 (29.87%), Postives = 269/549 (49.00%), Query Frame = 0 
Query:   49 LSSPRSLAACLHVGLTPEDLRPVSRCEYDECHLFLPRVTSSPKHLSSSSRSPRSSSPTMKMLPPEAQDKIYAHYKTRLFEKVNLIKEQRRQMIMKARGEEGYNFLLLDDDDDEGGTNTAQAHGAGSL-DPTALSRTRASPRNIRPHGKGGGEDDKEPHDMEARAAYLKSAMMEMEVRRIEAVKKRQEKEFSRMVEGEKRTILLQQKLLAASEEEMARKKAHEKEVAWHRKIEFQKKQERDREVQRQMEEEQKRRREIARKDGALKDKLTAEARAAERIRRHKAVLREEERRAKLEVLRQRTEEILKDQERRGEAQRREIEAREARVKAQVMAKKEAKANEIQTARNKAEKRIQGALLRNHAIQEAKRKDYQARAAEAAAR-AEQNHVELLEAAAKAAEGRKAKQAKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFWVEGVGGDGGEERRKGGK 596
            +SSPRSL ACL  G  P+DL P S                             S +  +K   PE  +  +  ++ R  EK+         M+ K R +   NFL      ++ G       G+G L   TA S T                      D+E  A  +K+ ++E+E +R   + +RQEKE  R+VE E+R   L +K+L   E +  R+  H++ VA  R    +K+ +++ E   + + E ++R+E+ ++    + +     +  E  R  +A  REEERRA  E   Q T  +++ QE + E + R +  REARV+AQ+  KK AKA E+   R  AE+RIQ  + +N  IQ+ K+  Y  + AE A R AE+   +  +A  +A +  K    +A +R + + Q   D  +  L R   +  FY ++  ER +   + ++  +L  +DK +N++R++R +E+ +   L R E +T R E+IK ER +L+EQR A A + + +KH+++EAME+M+  N F       DG ++RR+  K
Sbjct:   20 ISSPRSLEACLRSGCDPQDLMPRS-----------------------------SKTFAVKGELPELTEIRHNFFEARRKEKI--------AMVKKER-QSIINFL---SSKEQSGLPALGKSGSGLLAGATAASAT----------------------DVELEARRIKAGILEIERKRGLVIAERQEKEMQRVVENEQRMADLHKKILRVEEADAKRRAEHDQRVAQQRAAAAEKRAKKEMEKHEREKMEDEQRKEMIKRAAEAEARQLKIEKELEEQRIAEAAKREEERRALKEQQDQATAALIRAQEEKAEEKNRIMAEREARVQAQLDEKKAAKAAEVAAQRASAEQRIQEVMEKNRKIQQDKKIAYDLKVAEVARRKAERTEGDEAQAKKRAEDQAKQDNIRA-KRLEASYQDRADHRKDILARRRQKDKFYGQIRNERCKDLAMKKLYHDLVMEDKRQNIERLRRVDEFVRLQTLLRIEQETERTEKIKAEREFLVEQRIAVANKAIRKKHKIKEAMEKMRATNNFHGIDALLDGLDKRRRKSK 504
The following BLAST results are available for this feature:
BLAST of NO08G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77673.11.500e-3029.87conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00100NO08G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00100.1NO08G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00100.1.cds1NO08G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00100.1 ID=NO08G00100.1|Name=NO08G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp
ATGATAATGTCGTCGACCCAACCTTCCTCGTATTCATCCCCGGCAACCGG
CACAAGCCTAGGCGTCTCAATTGTAGGCTATGAAGCGGCGCTAAGACGGG
AGATGGAGCGCATGGCCACAGGAGAGTGTAAATTTTCCGTTGTCCTCAGC
AGCCCGCGCTCTCTTGCGGCGTGCTTGCATGTGGGGCTCACACCAGAGGA
CCTCCGACCCGTCAGTCGATGTGAGTACGACGAATGTCACCTATTTCTAC
CCCGCGTGACTTCCTCGCCAAAACATTTGTCGTCCTCGTCTAGGTCCCCA
CGATCCTCCTCACCTACGATGAAAATGCTGCCACCGGAAGCGCAGGACAA
GATTTACGCTCATTACAAGACACGACTTTTCGAAAAGGTGAACCTTATAA
AAGAGCAACGCCGACAAATGATTATGAAGGCGCGGGGGGAGGAGGGGTAC
AATTTCTTGCTGCTTGATGATGATGATGATGAAGGCGGTACCAACACTGC
TCAAGCGCATGGTGCTGGCAGCCTCGATCCAACAGCTCTGTCTCGAACCC
GAGCCTCTCCACGAAACATCCGTCCCCACGGCAAAGGCGGCGGGGAGGAT
GACAAGGAGCCACACGATATGGAAGCCCGCGCCGCATATTTGAAGTCTGC
CATGATGGAAATGGAGGTACGAAGGATCGAAGCTGTGAAAAAGCGCCAGG
AAAAGGAGTTTTCAAGGATGGTGGAGGGTGAGAAACGGACTATTTTGTTG
CAGCAGAAGCTGTTGGCGGCATCAGAGGAGGAAATGGCCAGGAAGAAGGC
ACACGAGAAAGAAGTGGCATGGCATCGCAAAATTGAATTCCAAAAGAAGC
AGGAACGGGACCGGGAGGTGCAGCGACAAATGGAAGAGGAGCAGAAGCGT
CGGAGGGAAATAGCTCGAAAGGACGGGGCACTCAAGGACAAGTTGACGGC
TGAGGCCCGGGCGGCAGAGCGAATACGACGCCATAAAGCTGTCCTTCGCG
AAGAAGAGCGCCGTGCCAAGCTCGAGGTCTTGCGGCAGCGTACAGAAGAG
ATTCTAAAAGACCAGGAACGGCGAGGAGAGGCCCAACGCCGCGAGATTGA
GGCGCGCGAGGCCAGAGTCAAGGCCCAGGTGATGGCGAAGAAGGAAGCAA
AAGCTAATGAGATCCAGACTGCACGGAACAAAGCTGAAAAACGAATTCAA
GGTGCGTTGCTCAGAAATCATGCGATCCAAGAGGCCAAACGCAAAGATTA
CCAAGCAAGAGCAGCCGAGGCTGCTGCCCGCGCGGAGCAGAATCACGTGG
AGCTGTTGGAGGCAGCGGCCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAA
GCCAAGGCGGACGAGCGCTATCAATGTGCTGTACAAGGACTGCAAGATCG
TATACAGAAAACGTTGACTCGGGCAGAGAATCGCGCACATTTCTACGCTA
AGGTGGCAGCAGAGCGAGCACAAGCCACGCTGTTAATGCGAGTGGAGAAG
GAGCTGAGGCAGAAAGATAAGGAGGAGAACGTCAAAAGGATACAGCGGAA
GGAAGAGTATGAAAAATCGTGTTTGTTGGCAAGGCAGGAGGCGGACACGG
CGCGGTACGAGGAAATCAAGCGAGAGAGGGCGTACTTATTAGAGCAACGA
AAAGCGACTGCGCAGGAGACAATGATAAGGAAGCATCGTCTGCGAGAGGC
CATGGAGGAAATGAAGATTAAAAATCGATTCTGGGTTGAGGGGGTGGGGG
GAGACGGAGGAGAGGAAAGACGAAAGGGTGGCAAGCCCCATGAGACAAGC
TCGGTCGGAGGGGGAAGGGGAAGAGGGAGAGAACGAGGAAGTAAGGACGG
AGGTGGAGGCCGCCCTGCGTCGGCCATGGTGTAA
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protein sequence of NO08G00100.1

>NO08G00100.1-protein ID=NO08G00100.1-protein|Name=NO08G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MIMSSTQPSSYSSPATGTSLGVSIVGYEAALRREMERMATGECKFSVVLS
SPRSLAACLHVGLTPEDLRPVSRCEYDECHLFLPRVTSSPKHLSSSSRSP
RSSSPTMKMLPPEAQDKIYAHYKTRLFEKVNLIKEQRRQMIMKARGEEGY
NFLLLDDDDDEGGTNTAQAHGAGSLDPTALSRTRASPRNIRPHGKGGGED
DKEPHDMEARAAYLKSAMMEMEVRRIEAVKKRQEKEFSRMVEGEKRTILL
QQKLLAASEEEMARKKAHEKEVAWHRKIEFQKKQERDREVQRQMEEEQKR
RREIARKDGALKDKLTAEARAAERIRRHKAVLREEERRAKLEVLRQRTEE
ILKDQERRGEAQRREIEAREARVKAQVMAKKEAKANEIQTARNKAEKRIQ
GALLRNHAIQEAKRKDYQARAAEAAARAEQNHVELLEAAAKAAEGRKAKQ
AKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEK
ELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQR
KATAQETMIRKHRLREAMEEMKIKNRFWVEGVGGDGGEERRKGGKPHETS
SVGGGRGRGRERGSKDGGGGRPASAMV*
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mRNA from alignment at chr8:39771..41654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00100.1 ID=NO08G00100.1|Name=NO08G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp|location=Sequence derived from alignment at chr8:39771..41654+ (Nannochloropsis oceanica)
ATGATAATGTCGTCGACCCAACCTTCCTCGTATTCATCCCCGGCAACCGG
CACAAGCCTAGGCGTCTCAATTGTAGGCTATGAAGCGGCGCTAAGACGGG
AGATGGAGCGCATGGCCACAGGAGAGTGTAAATTTTCCGTTGTCCTCAGC
AGCCCGCGCTCTCTTGCGGCGTGCTTGCATGTGGGGCTCACACCAGAGGA
CCTCCGACCCGTCAGTCGATGTGAGTACGACGAATGTCACCTATTTCTAC
CCCGCGTGACTTCCTCGCCAAAACATTTGTCGTCCTCGTCTAGGTCCCCA
CGATCCTCCTCACCTACGATGAAAATGCTGCCACCGGAAGCGCAGGACAA
GATTTACGCTCATTACAAGACACGACTTTTCGAAAAGGTGAACCTTATAA
AAGAGCAACGCCGACAAATGATTATGAAGGCGCGGGGGGAGGAGGGGTAC
AATTTCTTGCTGCTTGATGATGATGATGATGAAGGCGGTACCAACACTGC
TCAAGCGCATGGTGCTGGCAGCCTCGATCCAACAGCTCTGTCTCGAACCC
GAGCCTCTCCACGAAACATCCGTCCCCACGGCAAAGGCGGCGGGGAGGAT
GACAAGGAGCCACACGATATGGAAGCCCGCGCCGCATATTTGAAGTCTGC
CATGATGGAAATGGAGGTACGAAGGATCGAAGCTGTGAAAAAGCGCCAGG
AAAAGGAGTTTTCAAGGATGGTGGAGGGTGAGAAACGGACTATTTTGTTG
CAGCAGAAGCTGTTGGCGGCATCAGAGGAGGAAATGGCCAGGAAGAAGGC
ACACGAGAAAGAAGTGGCATGGCATCGCAAAATTGAATTCCAAAAGAAGC
AGGAACGGGACCGGGAGGTGCAGCGACAAATGGAAGAGGAGCAGAAGCGT
CGGAGGGAAATAGCTCGAAAGGACGGGGCACTCAAGGACAAGTTGACGGC
TGAGGCCCGGGCGGCAGAGCGAATACGACGCCATAAAGCTGTCCTTCGCG
AAGAAGAGCGCCGTGCCAAGCTCGAGGTCTTGCGGCAGCGTACAGAAGAG
ATTCTAAAAGACCAGGAACGGCGAGGAGAGGCCCAACGCCGCGAGATTGA
GGCGCGCGAGGCCAGAGTCAAGGCCCAGGTGATGGCGAAGAAGGAAGCAA
AAGCTAATGAGATCCAGACTGCACGGAACAAAGCTGAAAAACGAATTCAA
GGTGCGTTGCTCAGAAATCATGCGATCCAAGAGGCCAAACGCAAAGATTA
CCAAGCAAGAGCAGCCGAGGCTGCTGCCCGCGCGGAGCAGAATCACGTGG
AGCTGTTGGAGGCAGCGGCCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAA
GCCAAGGCGGACGAGCGCTATCAATGTGCTGTACAAGGACTGCAAGATCG
TATACAGAAAACGTTGACTCGGGCAGAGAATCGCGCACATTTCTACGCTA
AGGTGGCAGCAGAGCGAGCACAAGCCACGCTGTTAATGCGAGTGGAGAAG
GAGCTGAGGCAGAAAGATAAGGAGGAGAACGTCAAAAGGATACAGCGGAA
GGAAGAGTATGAAAAATCGTGTTTGTTGGCAAGGCAGGAGGCGGACACGG
CGCGGTACGAGGAAATCAAGCGAGAGAGGGCGTACTTATTAGAGCAACGA
AAAGCGACTGCGCAGGAGACAATGATAAGGAAGCATCGTCTGCGAGAGGC
CATGGAGGAAATGAAGATTAAAAATCGATTCTGGGTTGAGGGGGTGGGGG
GAGACGGAGGAGAGGAAAGACGAAAGGGTGGCAAGCCCCATGAGACAAGC
TCGGTCGGAGGGGGAAGGGGAAGAGGGAGAGAACGAGGAAGTAAGGACGG
AGGTGGAGGCCGCCCTGCGTCGGCCATGGTGTAA
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Coding sequence (CDS) from alignment at chr8:39771..41654+

>NO08G00100.1 ID=NO08G00100.1|Name=NO08G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at chr8:39771..41654+ (Nannochloropsis oceanica)
ATGATAATGTCGTCGACCCAACCTTCCTCGTATTCATCCCCGGCAACCGG
CACAAGCCTAGGCGTCTCAATTGTAGGCTATGAAGCGGCGCTAAGACGGG
AGATGGAGCGCATGGCCACAGGAGAGTGTAAATTTTCCGTTGTCCTCAGC
AGCCCGCGCTCTCTTGCGGCGTGCTTGCATGTGGGGCTCACACCAGAGGA
CCTCCGACCCGTCAGTCGATGTGAGTACGACGAATGTCACCTATTTCTAC
CCCGCGTGACTTCCTCGCCAAAACATTTGTCGTCCTCGTCTAGGTCCCCA
CGATCCTCCTCACCTACGATGAAAATGCTGCCACCGGAAGCGCAGGACAA
GATTTACGCTCATTACAAGACACGACTTTTCGAAAAGGTGAACCTTATAA
AAGAGCAACGCCGACAAATGATTATGAAGGCGCGGGGGGAGGAGGGGTAC
AATTTCTTGCTGCTTGATGATGATGATGATGAAGGCGGTACCAACACTGC
TCAAGCGCATGGTGCTGGCAGCCTCGATCCAACAGCTCTGTCTCGAACCC
GAGCCTCTCCACGAAACATCCGTCCCCACGGCAAAGGCGGCGGGGAGGAT
GACAAGGAGCCACACGATATGGAAGCCCGCGCCGCATATTTGAAGTCTGC
CATGATGGAAATGGAGGTACGAAGGATCGAAGCTGTGAAAAAGCGCCAGG
AAAAGGAGTTTTCAAGGATGGTGGAGGGTGAGAAACGGACTATTTTGTTG
CAGCAGAAGCTGTTGGCGGCATCAGAGGAGGAAATGGCCAGGAAGAAGGC
ACACGAGAAAGAAGTGGCATGGCATCGCAAAATTGAATTCCAAAAGAAGC
AGGAACGGGACCGGGAGGTGCAGCGACAAATGGAAGAGGAGCAGAAGCGT
CGGAGGGAAATAGCTCGAAAGGACGGGGCACTCAAGGACAAGTTGACGGC
TGAGGCCCGGGCGGCAGAGCGAATACGACGCCATAAAGCTGTCCTTCGCG
AAGAAGAGCGCCGTGCCAAGCTCGAGGTCTTGCGGCAGCGTACAGAAGAG
ATTCTAAAAGACCAGGAACGGCGAGGAGAGGCCCAACGCCGCGAGATTGA
GGCGCGCGAGGCCAGAGTCAAGGCCCAGGTGATGGCGAAGAAGGAAGCAA
AAGCTAATGAGATCCAGACTGCACGGAACAAAGCTGAAAAACGAATTCAA
GGTGCGTTGCTCAGAAATCATGCGATCCAAGAGGCCAAACGCAAAGATTA
CCAAGCAAGAGCAGCCGAGGCTGCTGCCCGCGCGGAGCAGAATCACGTGG
AGCTGTTGGAGGCAGCGGCCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAA
GCCAAGGCGGACGAGCGCTATCAATGTGCTGTACAAGGACTGCAAGATCG
TATACAGAAAACGTTGACTCGGGCAGAGAATCGCGCACATTTCTACGCTA
AGGTGGCAGCAGAGCGAGCACAAGCCACGCTGTTAATGCGAGTGGAGAAG
GAGCTGAGGCAGAAAGATAAGGAGGAGAACGTCAAAAGGATACAGCGGAA
GGAAGAGTATGAAAAATCGTGTTTGTTGGCAAGGCAGGAGGCGGACACGG
CGCGGTACGAGGAAATCAAGCGAGAGAGGGCGTACTTATTAGAGCAACGA
AAAGCGACTGCGCAGGAGACAATGATAAGGAAGCATCGTCTGCGAGAGGC
CATGGAGGAAATGAAGATTAAAAATCGATTCTGGGTTGAGGGGGTGGGGG
GAGACGGAGGAGAGGAAAGACGAAAGGGTGGCAAGCCCCATGAGACAAGC
TCGGTCGGAGGGGGAAGGGGAAGAGGGAGAGAACGAGGAAGTAAGGACGG
AGGTGGAGGCCGCCCTGCGTCGGCCATGGTGTAA
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Synonyms
Publications