NO08G00030.1, NO08G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00030.1
Unique NameNO08G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1482
Alignment locationchr8:8037..9780 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:8037..9780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00030.1 vs.
Match: EWM26476.1 (atp-dependent -nad h-hydrate dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 492.7 bits (1267), Expect = 1.400e-135
Identity = 292/503 (58.05%), Postives = 344/503 (68.39%), Query Frame = 0 
Query:    4 PPSSCLPPAFLLQQQHHYYHIRRQHLKQRGGGPLRLLPLALTAFTTFFGSSSFKASGSAGGTT-----GQGLSAAAMPLAA------ASSSSSSSEATMSTCLNHATAAADLDMIKRLIPPLTDTARKGQMGKVGILGGSQDFTGAPFYAGMASLKLGGDLCYIFTADEAAGPIKGYSPELMVTSVYSAKALGVGRRTGGATEEGGGGKGSSVLRLFNRTVGRGREEEEEALVTRFVEQVTSFFPKLHVLVVGPGLGRDPLVMEATHRILLEAKHQALPVVIDADGLWLVAHAPDVLHDYPSAGGGEGGEGGGKVGGVVVTPNLIEFARLQAGLEGASIADAVPSRKAPQPRDVMRVAQALSGEKGKVTVLLKGKEDIVADGQRYLVVREEGSKRRSGGLGDILAGSMGVLMHWSALVLKAQSGGG----EGEEGAGGGETASSSSCEARRLEARDTVLWACGTASFIARRASREAFKEKRRSMTAPDAIAHLGPVLEELSPT 492
            PP    PP FL    H            + G  LR LPLA+TAFTTFFGS S K+  S  G       GQG++AA++  AA      A  SSS      + CLNH+ A +D+  IKRLIP LT TARKGQMG+VG+LGGS DFTGAPFYAGMA LK+GGDLCYIFTA+EA+GP+K YSPELMVT VYSAK+LGVG       EE G    +               + +E  V R V++VT FFPKLHVLVVGPGLGRDP +MEAT RIL+EAK  ALP+VIDADGLWLVAH+P++L DYP     EG +GGG    VVVTPNLIEFARLQAGL GAS+A+A P     Q  DV+ VA+AL G+ G+VTV LKG+EDIVAD +R+LVV EEG++RRSGGLGDILAG+ GVL+HWS L ++ Q+ GG    E  E    G+ A S      +++ RD VLWAC  AS IARRASR AF+E RRSMTAPD +AHLGPVLEELSPT
Sbjct:   43 PPPFLRPPTFLPALSH----------STKRGVSLRFLPLAITAFTTFFGSMSCKSGSSGRGAALSDGRGQGVAAASIHNAASYSQSDAGGSSSPIAPGRALCLNHS-AGSDIGTIKRLIPALTHTARKGQMGRVGLLGGSADFTGAPFYAGMAGLKVGGDLCYIFTAEEASGPLKAYSPELMVTPVYSAKSLGVGFAGDLEGEEDGSSDAAR----------SAEHKAKEKQVARMVQRVTPFFPKLHVLVVGPGLGRDPWIMEATRRILVEAKTHALPLVIDADGLWLVAHSPEILQDYP-----EGDDGGG----VVVTPNLIEFARLQAGLTGASVAEATPPAVPFQHTDVIAVAKALGGKAGRVTVCLKGREDIVADRERWLVVTEEGARRRSGGLGDILAGTTGVLLHWSHLAMQEQAHGGAVKAERSERGSEGKGAQSGEESTCQIDPRDRVLWACAGASLIARRASRRAFEEHRRSMTAPDVLAHLGPVLEELSPT 515
The following BLAST results are available for this feature:
BLAST of NO08G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26476.11.400e-13558.05atp-dependent -nad h-hydrate dehydratase [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00030NO08G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00030.1NO08G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00030.1.cds1NO08G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00030.1.cds2NO08G00030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00030.1 ID=NO08G00030.1|Name=NO08G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
ATGCCCGCCCCCCCCTCCTCCTGCCTTCCTCCTGCCTTTCTCCTCCAACA
GCAGCACCATTATTATCACATTCGCCGCCAGCACCTCAAGCAGCGCGGCG
GTGGCCCCTTGCGCCTTCTACCTTTGGCACTCACGGCCTTCACCACATTC
TTCGGCTCCTCCTCCTTCAAGGCCAGCGGAAGTGCTGGTGGAACAACTGG
TCAAGGCTTGTCTGCGGCTGCCATGCCTCTTGCTGCCGCTTCCTCGTCCT
CGTCCTCGTCGGAGGCCACTATGTCCACGTGCCTCAACCACGCTACCGCC
GCAGCCGACTTGGACATGATCAAACGCCTGATCCCTCCATTAACAGACAC
GGCCCGTAAGGGACAAATGGGGAAGGTGGGTATCCTAGGAGGCTCACAAG
ACTTTACCGGTGCGCCCTTCTACGCGGGCATGGCCAGCCTCAAGTTGGGC
GGCGACCTGTGCTATATCTTCACCGCAGACGAAGCCGCAGGCCCTATCAA
GGGGTATAGTCCGGAGCTTATGGTGACGTCGGTCTACTCTGCCAAGGCCC
TGGGGGTCGGAAGGAGGACCGGTGGTGCCACAGAGGAAGGAGGAGGAGGA
AAAGGAAGCTCAGTCTTGCGGCTGTTCAACCGCACTGTCGGCAGAGGCAG
AGAGGAGGAAGAGGAAGCTCTTGTGACCCGCTTTGTAGAGCAAGTGACGT
CATTTTTCCCCAAGCTGCACGTGCTGGTGGTGGGGCCCGGGCTGGGTCGT
GACCCTCTGGTAATGGAGGCGACGCACCGCATTTTGCTCGAAGCCAAACA
CCAGGCCTTGCCCGTCGTGATTGACGCCGACGGGCTCTGGCTCGTTGCGC
ACGCCCCCGACGTTTTGCACGACTATCCATCTGCAGGAGGAGGCGAAGGA
GGCGAAGGAGGAGGAAAAGTAGGCGGGGTGGTGGTTACGCCCAATCTGAT
TGAGTTTGCCAGACTGCAGGCAGGGCTCGAGGGCGCCTCGATAGCTGATG
CTGTCCCCTCGCGCAAGGCCCCGCAACCCAGGGACGTGATGAGGGTGGCT
CAGGCATTGAGTGGAGAGAAGGGAAAGGTGACAGTGCTCTTGAAGGGAAA
GGAGGACATCGTGGCGGACGGGCAGCGGTATTTGGTGGTGAGGGAGGAGG
GATCCAAGCGGCGGTCAGGGGGGCTGGGGGATATTTTGGCGGGGAGCATG
GGCGTGTTGATGCATTGGTCAGCCTTGGTTTTGAAAGCACAAAGCGGTGG
AGGGGAAGGGGAGGAAGGGGCTGGAGGAGGAGAGACGGCATCGTCGTCTT
CGTGCGAGGCTAGACGGCTCGAGGCGCGGGACACTGTGTTGTGGGCGTGT
GGCACGGCCTCTTTCATTGCCCGGCGAGCGAGTCGGGAGGCGTTCAAGGA
AAAGCGGCGGTCCATGACGGCGCCGGATGCGATCGCACACCTGGGGCCAG
TCCTGGAGGAGCTCAGTCCCACGACGCCTTGA
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protein sequence of NO08G00030.1

>NO08G00030.1-protein ID=NO08G00030.1-protein|Name=NO08G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MPAPPSSCLPPAFLLQQQHHYYHIRRQHLKQRGGGPLRLLPLALTAFTTF
FGSSSFKASGSAGGTTGQGLSAAAMPLAAASSSSSSSEATMSTCLNHATA
AADLDMIKRLIPPLTDTARKGQMGKVGILGGSQDFTGAPFYAGMASLKLG
GDLCYIFTADEAAGPIKGYSPELMVTSVYSAKALGVGRRTGGATEEGGGG
KGSSVLRLFNRTVGRGREEEEEALVTRFVEQVTSFFPKLHVLVVGPGLGR
DPLVMEATHRILLEAKHQALPVVIDADGLWLVAHAPDVLHDYPSAGGGEG
GEGGGKVGGVVVTPNLIEFARLQAGLEGASIADAVPSRKAPQPRDVMRVA
QALSGEKGKVTVLLKGKEDIVADGQRYLVVREEGSKRRSGGLGDILAGSM
GVLMHWSALVLKAQSGGGEGEEGAGGGETASSSSCEARRLEARDTVLWAC
GTASFIARRASREAFKEKRRSMTAPDAIAHLGPVLEELSPTTP*
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mRNA from alignment at chr8:8037..9780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00030.1 ID=NO08G00030.1|Name=NO08G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1744bp|location=Sequence derived from alignment at chr8:8037..9780+ (Nannochloropsis oceanica)
ATGCCCGCCCCCCCCTCCTCCTGCCTTCCTCCTGCCTTTCTCCTCCAACA
GCAGCACCATTATTATCACATTCGCCGCCAGCACCTCAAGCAGCGCGGCG
GTGGCCCCTTGCGCCTTCTACCTTTGGCACTCACGGCCTTCACCACATTC
TTCGGCTCCTCCTCCTTCAAGGCCAGCGGAAGTGCTGGTGGAACAACTGG
TCAAGGCTTGTCTGCGGCTGCCATGCCTCTTGCTGCCGCTTCCTCGTCCT
CGTCCTCGTCGGAGGCCACTATGTCCACGTGCCTCAACCACGCTACCGCC
GCAGCCGACTTGGACATGATCAAACGCCTGATCCCTCCATTAACAGACAC
GGCCCGTAAGGGACAAATGGGGAAGGTGGGTATCCTAGGAGGCTCACAAG
ACTTTACCGGTGCGCCCTTCTACGCGGGCATGGCCAGCCTCAAGTTGGGC
GGCGACCTGTGCTATATCTTCACCGCAGACGAAGCCGCAGGCCCTATCAA
GGGGTATAGTCCGGAGCTTATGGTGACGTCGGTCTACTCTGCCAAGGCCC
TGGGGGTCGGAAGGAGGACCGGTGGTGCCACAGAGGAAGGAGGAGGAGGA
AAAGGAAGCTCAGTCTTGCGGCTGTTCAACCGCACTGTCGGCAGAGGCAG
AGAGGAGGAAGAGGAAGCTCTTGTGACCCGCTTTGTAGAGCAAGTGACGT
CATTTTTCCCCAAGCTGCACGTGCTGGTGGTGGGGCCCGGGCTGGGTCGT
GACCCTCTGGTAATGGAGGCGACGCACCGCATTTTGCTCGAAGCCAAACA
CCAGGCCTTGCCCGTCGTGATTGACGCCGACGGGCTCTGGCTCGTTGCGC
ACGCCCCCGACGTTTTGCACGACTATCCATCTGCAGGAGGAGGCGAAGGA
GGCGAAGGAGGAGGAAAAGTAGGCGGGGTGGTGGTTACGCCCAATCTGAT
TGAGTTTGCCAGACTGCAGGCAGGGCTCGAGGGCGCCTCGATAGCTGATG
CTGTCCCCTCGCGCAAGGCCCCGCAACCCAGGGACGTGATGAGGGTGGCT
CAGGCATTGAGTGGAGAGAAGGGAAAGGTGACAGTGCTCTTGAAGGGAAA
GGAGGACATCGTGGCGGACGGGCAGCGGTATTTGGTGGTGAGGGAGGAGG
GATCCAAGCGGCGGTCAGGGGGGCTGGGGGATATTTTGGCGGGGAGCATG
GGCGTGTTGATGCATTGGTCAGCCTTGGTTTTGAAAGCACAAAGCGGTGG
AGGGGAAGGGGAGGAAGGGGCTGGAGGAGGAGAGACGGCATCGTCGTCTT
CGTGCGAGGCTAGACGGCTCGAGGCGCGGGACACTGTGTTGTGGGCGTGT
GGCACGGCCTCTTTCATTGCCCGGCGAGCGAGTCGGGAGGCGTTCAAGGA
AAAGCGGCGGTCCATGACGGCGCCGGATGCGATCGGTACGTGATGTTACG
AGGAGAAGATGGGGGAGAGAGGGAGAGGGAAGAGTACGCGAAGGATGGTG
CAGGAATGAGAGGCAGGAGAGTGGTAATAGTAGTGTATGTCGTCGACAAA
TGAGGTTCTAGGATTTGAGCAGGAAGGTGGAAGTCGATTTAGAGAAAACA
AGGGGCAAAGGGGGAAGCAGGAGGAAAATCAAACGGCGTCTTGTGCGAAG
TTCTCACTGGTTACTTCAACCCCCCTTATACACGCACATTTTCACAGCAC
ACCTGGGGCCAGTCCTGGAGGAGCTCAGTCCCACGACGCCTTGA
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Coding sequence (CDS) from alignment at chr8:8037..9780+

>NO08G00030.1 ID=NO08G00030.1|Name=NO08G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at chr8:8037..9780+ (Nannochloropsis oceanica)
ATGCCCGCCCCCCCCTCCTCCTGCCTTCCTCCTGCCTTTCTCCTCCAACA
GCAGCACCATTATTATCACATTCGCCGCCAGCACCTCAAGCAGCGCGGCG
GTGGCCCCTTGCGCCTTCTACCTTTGGCACTCACGGCCTTCACCACATTC
TTCGGCTCCTCCTCCTTCAAGGCCAGCGGAAGTGCTGGTGGAACAACTGG
TCAAGGCTTGTCTGCGGCTGCCATGCCTCTTGCTGCCGCTTCCTCGTCCT
CGTCCTCGTCGGAGGCCACTATGTCCACGTGCCTCAACCACGCTACCGCC
GCAGCCGACTTGGACATGATCAAACGCCTGATCCCTCCATTAACAGACAC
GGCCCGTAAGGGACAAATGGGGAAGGTGGGTATCCTAGGAGGCTCACAAG
ACTTTACCGGTGCGCCCTTCTACGCGGGCATGGCCAGCCTCAAGTTGGGC
GGCGACCTGTGCTATATCTTCACCGCAGACGAAGCCGCAGGCCCTATCAA
GGGGTATAGTCCGGAGCTTATGGTGACGTCGGTCTACTCTGCCAAGGCCC
TGGGGGTCGGAAGGAGGACCGGTGGTGCCACAGAGGAAGGAGGAGGAGGA
AAAGGAAGCTCAGTCTTGCGGCTGTTCAACCGCACTGTCGGCAGAGGCAG
AGAGGAGGAAGAGGAAGCTCTTGTGACCCGCTTTGTAGAGCAAGTGACGT
CATTTTTCCCCAAGCTGCACGTGCTGGTGGTGGGGCCCGGGCTGGGTCGT
GACCCTCTGGTAATGGAGGCGACGCACCGCATTTTGCTCGAAGCCAAACA
CCAGGCCTTGCCCGTCGTGATTGACGCCGACGGGCTCTGGCTCGTTGCGC
ACGCCCCCGACGTTTTGCACGACTATCCATCTGCAGGAGGAGGCGAAGGA
GGCGAAGGAGGAGGAAAAGTAGGCGGGGTGGTGGTTACGCCCAATCTGAT
TGAGTTTGCCAGACTGCAGGCAGGGCTCGAGGGCGCCTCGATAGCTGATG
CTGTCCCCTCGCGCAAGGCCCCGCAACCCAGGGACGTGATGAGGGTGGCT
CAGGCATTGAGTGGAGAGAAGGGAAAGGTGACAGTGCTCTTGAAGGGAAA
GGAGGACATCGTGGCGGACGGGCAGCGGTATTTGGTGGTGAGGGAGGAGG
GATCCAAGCGGCGGTCAGGGGGGCTGGGGGATATTTTGGCGGGGAGCATG
GGCGTGTTGATGCATTGGTCAGCCTTGGTTTTGAAAGCACAAAGCGGTGG
AGGGGAAGGGGAGGAAGGGGCTGGAGGAGGAGAGACGGCATCGTCGTCTT
CGTGCGAGGCTAGACGGCTCGAGGCGCGGGACACTGTGTTGTGGGCGTGT
GGCACGGCCTCTTTCATTGCCCGGCGAGCGAGTCGGGAGGCGTTCAAGGA
AAAGCGGCGGTCCATGACGGCGCCGGATGCGATCGCACACCTGGGGCCAG
TCCTGGAGGAGCTCAGTCCCACGACGCCTTGA
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Synonyms
Publications