NO07G04650.1, NO07G04650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04650.1
Unique NameNO07G04650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr7:1314030..1314704 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1314030..1314704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04650.1 vs.
Match: XP_005855614.1 (hypothetical protein NGA_0612700 [Nannochloropsis gaditana CCMP526]; EKU20745.1 hypothetical protein NGA_0612700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.5 bits (275), Expect = 6.700e-21
Identity = 81/189 (42.86%), Postives = 115/189 (60.85%), Query Frame = 0 
Query:   10 LEQQHVLARMARRGVNPPDSWTDPHAVALTLAALQQLIETQRQEVEAVKRQ-------------SSDVAPATPSSSSSSSSRTLVTTTPTMRNMRQGVAELAMSFKAYEREIEKLQAKVLEATREAEALEALAPPLLAQDGTVVDPLQVLEKVRRKAQRVLAERERTMTREEEEEA---ASLRRGEGVS 183
            +EQ+  +AR+AR  ++PPDSWTDPHAVALTLAA+Q L E  +++   +K+Q              SD  PA  +S+ +    TL T  P+ R +R+G AEL +  +AYE+E+EK++A + +  REAE LE LAP L  +     DP  +LEK R+K + +L +  R MT+EE EEA   A+  R  GVS
Sbjct:   29 VEQELAIARLARHHISPPDSWTDPHAVALTLAAVQVLTEEAKEKGIKLKKQLPVMFIETQETSKESDFGPARHTSTWTRLPETLATGLPS-RVLRRGAAELNLRLQAYEKELEKVEAHLKKTAREAEVLEKLAPLLTVER----DPGWLLEKARQKVESLLQQHGRIMTQEEAEEANLIAARARRTGVS 212
The following BLAST results are available for this feature:
BLAST of NO07G04650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855614.16.700e-2142.86hypothetical protein NGA_0612700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04650NO07G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04650.1NO07G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04650.1.cds1NO07G04650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04650.1 ID=NO07G04650.1|Name=NO07G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGCAAGTCCAGCAGCGGGAGCAGTACCTCGAGCAGCAGCACGTCCTGGC
ACGCATGGCACGGCGAGGTGTCAACCCACCAGATTCCTGGACAGACCCCC
ACGCCGTCGCTCTGACCCTGGCCGCTCTTCAGCAGCTCATCGAGACCCAG
CGGCAGGAGGTGGAGGCCGTTAAACGACAGTCGTCAGATGTCGCCCCCGC
CACGCCCTCTAGTAGTAGCAGTAGTAGTAGTAGGACTCTGGTTACGACGA
CACCCACTATGCGCAACATGCGGCAAGGGGTAGCCGAGTTGGCCATGAGC
TTCAAAGCCTACGAGCGAGAGATCGAAAAGCTGCAAGCCAAGGTTCTGGA
AGCCACGCGGGAAGCCGAAGCACTTGAAGCCCTCGCACCGCCCCTACTGG
CTCAGGATGGGACAGTGGTGGACCCGCTGCAGGTGCTGGAAAAGGTAAGA
CGTAAGGCCCAGAGGGTGCTGGCGGAGCGAGAGAGGACTATGACGCGTGA
GGAAGAGGAGGAGGCGGCGTCGTTGCGGAGGGGAGAGGGAGTGTCGGGGC
CCTTGAGTCAAGAGCCTCGGGAAGAGGCGAAACGACTGGTGGCGCGTAAG
TGGATGGGGGCTGCAGGAGGCGGAGAGAGACGGACATCGGGATGTTACCA
ATACACTGAGGAATTGATTGATTGA
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protein sequence of NO07G04650.1

>NO07G04650.1-protein ID=NO07G04650.1-protein|Name=NO07G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MQVQQREQYLEQQHVLARMARRGVNPPDSWTDPHAVALTLAALQQLIETQ
RQEVEAVKRQSSDVAPATPSSSSSSSSRTLVTTTPTMRNMRQGVAELAMS
FKAYEREIEKLQAKVLEATREAEALEALAPPLLAQDGTVVDPLQVLEKVR
RKAQRVLAERERTMTREEEEEAASLRRGEGVSGPLSQEPREEAKRLVARK
WMGAAGGGERRTSGCYQYTEELID*
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mRNA from alignment at chr7:1314030..1314704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04650.1 ID=NO07G04650.1|Name=NO07G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at chr7:1314030..1314704+ (Nannochloropsis oceanica)
ATGCAAGTCCAGCAGCGGGAGCAGTACCTCGAGCAGCAGCACGTCCTGGC
ACGCATGGCACGGCGAGGTGTCAACCCACCAGATTCCTGGACAGACCCCC
ACGCCGTCGCTCTGACCCTGGCCGCTCTTCAGCAGCTCATCGAGACCCAG
CGGCAGGAGGTGGAGGCCGTTAAACGACAGTCGTCAGATGTCGCCCCCGC
CACGCCCTCTAGTAGTAGCAGTAGTAGTAGTAGGACTCTGGTTACGACGA
CACCCACTATGCGCAACATGCGGCAAGGGGTAGCCGAGTTGGCCATGAGC
TTCAAAGCCTACGAGCGAGAGATCGAAAAGCTGCAAGCCAAGGTTCTGGA
AGCCACGCGGGAAGCCGAAGCACTTGAAGCCCTCGCACCGCCCCTACTGG
CTCAGGATGGGACAGTGGTGGACCCGCTGCAGGTGCTGGAAAAGGTAAGA
CGTAAGGCCCAGAGGGTGCTGGCGGAGCGAGAGAGGACTATGACGCGTGA
GGAAGAGGAGGAGGCGGCGTCGTTGCGGAGGGGAGAGGGAGTGTCGGGGC
CCTTGAGTCAAGAGCCTCGGGAAGAGGCGAAACGACTGGTGGCGCGTAAG
TGGATGGGGGCTGCAGGAGGCGGAGAGAGACGGACATCGGGATGTTACCA
ATACACTGAGGAATTGATTGATTGA
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Coding sequence (CDS) from alignment at chr7:1314030..1314704+

>NO07G04650.1 ID=NO07G04650.1|Name=NO07G04650.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr7:1314030..1314704+ (Nannochloropsis oceanica)
ATGCAAGTCCAGCAGCGGGAGCAGTACCTCGAGCAGCAGCACGTCCTGGC
ACGCATGGCACGGCGAGGTGTCAACCCACCAGATTCCTGGACAGACCCCC
ACGCCGTCGCTCTGACCCTGGCCGCTCTTCAGCAGCTCATCGAGACCCAG
CGGCAGGAGGTGGAGGCCGTTAAACGACAGTCGTCAGATGTCGCCCCCGC
CACGCCCTCTAGTAGTAGCAGTAGTAGTAGTAGGACTCTGGTTACGACGA
CACCCACTATGCGCAACATGCGGCAAGGGGTAGCCGAGTTGGCCATGAGC
TTCAAAGCCTACGAGCGAGAGATCGAAAAGCTGCAAGCCAAGGTTCTGGA
AGCCACGCGGGAAGCCGAAGCACTTGAAGCCCTCGCACCGCCCCTACTGG
CTCAGGATGGGACAGTGGTGGACCCGCTGCAGGTGCTGGAAAAGGTAAGA
CGTAAGGCCCAGAGGGTGCTGGCGGAGCGAGAGAGGACTATGACGCGTGA
GGAAGAGGAGGAGGCGGCGTCGTTGCGGAGGGGAGAGGGAGTGTCGGGGC
CCTTGAGTCAAGAGCCTCGGGAAGAGGCGAAACGACTGGTGGCGCGTAAG
TGGATGGGGGCTGCAGGAGGCGGAGAGAGACGGACATCGGGATGTTACCA
ATACACTGAGGAATTGATTGATTGA
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Synonyms
Publications