NO07G04490.1, NO07G04490.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G04490.1
Unique Name	NO07G04490.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1458
Alignment location	chr7:1258188..1261646 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1258188..1261646 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G04490.1 vs.
Match: EWM26932.1 (hypothetical protein Naga_100274g1 [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 6.600e-66
Identity = 145/276 (52.54%), Postives = 194/276 (70.29%), Query Frame = 0

Query:    9 LRSLFLLLLAPLLAAELIQVQVVVRAGAHKWAPYNKPKREVGSSLLPSGYVGMEQLGKILKARYLGKAATVPLANVTDIYKPGDALVRAMSRDQTVSSSDAMVYGMWNPIAAAGRAAPLTGGYQPVPVFTISRGVDYLLSAYSVCPAIDAHVEAFFNSSDFKEKEVATADVRSQLGTLLNMTHQLVDMPLMYDRVTLATKYGDVPSGGA-ILPALTTAQLAALADMADFVEHGKYSNRDTGVLCG-GPLLAEIFSRIDSVVSGASLRAAPFLAYMG 283
            +R L LLL   LLAA+LIQVQV+ RAGAHKW   +K  R+  ++LLP+G+VGME+LG++LKARY+G AA++PLANV+DIY+ GDAL+R M+R+QTV S+DA+ YG+W+P+  A R APLTGG+Q VPVFTIS  +DYLLSAY  CP +D  V+ F N SD+++KE AT  +R+QLGTLLNM+ +L+ MP +YDRV LAT YGD+PS G  + P+      + L+     V HG  S R TG      P L + +  ++S  S +SL+  P L   G
Sbjct:    1 MRGLLLLLGLRLLAADLIQVQVISRAGAHKWHFPSKQWRQESAALLPAGFVGMEELGQVLKARYIGLAASMPLANVSDIYQFGDALIRTMAREQTVQSADAITYGVWSPVGRAVRGAPLTGGHQAVPVFTISPAMDYLLSAYRACPMVDFVVDTFMNGSDYQKKENATLGIRTQLGTLLNMSSELIMMPQLYDRVVLATLYGDMPSAGEYVFPSFP----SLLSLPCSCVCHG--SGRGTGACPALPPCLLKRWRVVES--SSSSLQPLPLLGCSG 268

The following BLAST results are available for this feature:

BLAST of NO07G04490.1 vs.

BLAST of NO07G04490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26932.1	6.600e-66	52.54	hypothetical protein Naga_100274g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G04490	NO07G04490	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04490.1	NO07G04490.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04490.1.cds1	NO07G04490.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds2	NO07G04490.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds3	NO07G04490.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds4	NO07G04490.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds5	NO07G04490.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds6	NO07G04490.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds7	NO07G04490.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds8	NO07G04490.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds9	NO07G04490.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds10	NO07G04490.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds11	NO07G04490.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds12	NO07G04490.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04490.1.cds13	NO07G04490.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:1258188..1261646-
coding sequence from alignment at chr7:1258188..1261646-

mRNA sequence

>NO07G04490.1 ID=NO07G04490.1|Name=NO07G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGGAAGTTGCTAGAAGCAGCCGTCTGCGAAGCCTGTTCCTGCTGCTGCT
TGCACCCCTCTTGGCGGCGGAGCTAATCCAAGTCCAGGTTGTCGTCCGGG
CGGGCGCCCACAAATGGGCCCCTTACAATAAGCCCAAGCGGGAGGTGGGC
AGTAGCTTGCTGCCCTCTGGGTACGTGGGCATGGAGCAGCTGGGCAAGAT
TCTCAAGGCCCGCTATCTCGGCAAGGCTGCCACCGTGCCTTTGGCCAACG
TCACCGACATCTACAAACCCGGCGACGCGCTTGTTCGCGCCATGTCGCGG
GACCAAACCGTCTCCTCCTCGGATGCCATGGTGTACGGCATGTGGAATCC
GATTGCCGCCGCGGGGAGGGCTGCGCCCCTGACTGGAGGATACCAGCCCG
TTCCTGTCTTCACCATCAGCCGTGGAGTGGATTACCTGCTGTCGGCTTAT
AGTGTGTGTCCCGCCATTGACGCGCACGTCGAGGCTTTCTTCAACAGCTC
CGACTTCAAGGAGAAGGAGGTTGCTACGGCCGACGTCCGCTCCCAACTCG
GCACCCTCCTCAATATGACGCACCAGCTGGTGGACATGCCGTTGATGTAC
GACCGAGTCACCCTCGCCACAAAGTACGGCGATGTGCCCAGTGGCGGAGC
GATCCTCCCCGCCCTGACGACTGCCCAGCTCGCGGCCTTGGCGGACATGG
CCGACTTCGTCGAGCACGGCAAATACTCGAATCGTGACACGGGTGTCCTG
TGTGGTGGGCCCTTGCTCGCCGAGATCTTCAGTCGCATTGACTCGGTGGT
TAGCGGTGCGAGCCTGCGGGCCGCTCCCTTCCTGGCCTATATGGGCACGC
ACTCGACCATCAACTGCCTAATCTCCGCGCTCGATGCCCCCGACACGGTG
ATGACGAACCGCATCCATCCCTACGGCTCGGCCGTCATCTTCGAGACGCA
CACGGTGGGGAAGGAGCACTACCTGAATACCCTCTATTTGGAGGGAGGCA
CCGCCGACTTCCAGAAGGTTTACTTGAACAAGAAGGCCGAGGGTCCCTGT
GGCCAGGGCGGGAAGCCGTGTGTCCTGGCGGACGCTCAGCAGCTGCTCGT
TGAGAGGATGGAACCCAGCGTGATCGGCTGGTGCGACGCCTGCAGCAGCT
ACTTCATGCCGGCGTGCAACCAAGCCATGCAGATGAAGATGAGCGAAGCC
CTGGAGATGGACTTCGAGAGCACGGAGCGACGCAATCGTCTGACCAACGT
GGGTGCCGCCTTCATCGGCCTCTTCATGGGCGCCCTCCTGGTGGTGCTCT
CCGCCTTCTTGGGGCCCAAAATTAAACGACGGTGGAGGGCGAGGCGGACA
GAGGCCGCGGGCTATGTGTCCGGGGAAGAGGGAGGGATGGAGGGCGAGGG
GGAGATCGAGGCCCAGGGGAGGAGGAGGGGGGTGGACGAGGAAGGCACGG
CTATTTAA

protein sequence of NO07G04490.1

>NO07G04490.1-protein ID=NO07G04490.1-protein|Name=NO07G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MEVARSSRLRSLFLLLLAPLLAAELIQVQVVVRAGAHKWAPYNKPKREVG
SSLLPSGYVGMEQLGKILKARYLGKAATVPLANVTDIYKPGDALVRAMSR
DQTVSSSDAMVYGMWNPIAAAGRAAPLTGGYQPVPVFTISRGVDYLLSAY
SVCPAIDAHVEAFFNSSDFKEKEVATADVRSQLGTLLNMTHQLVDMPLMY
DRVTLATKYGDVPSGGAILPALTTAQLAALADMADFVEHGKYSNRDTGVL
CGGPLLAEIFSRIDSVVSGASLRAAPFLAYMGTHSTINCLISALDAPDTV
MTNRIHPYGSAVIFETHTVGKEHYLNTLYLEGGTADFQKVYLNKKAEGPC
GQGGKPCVLADAQQLLVERMEPSVIGWCDACSSYFMPACNQAMQMKMSEA
LEMDFESTERRNRLTNVGAAFIGLFMGALLVVLSAFLGPKIKRRWRARRT
EAAGYVSGEEGGMEGEGEIEAQGRRRGVDEEGTAI*

mRNA from alignment at chr7:1258188..1261646-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G04490.1 ID=NO07G04490.1|Name=NO07G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3459bp|location=Sequence derived from alignment at chr7:1258188..1261646- (Nannochloropsis oceanica)
ATGGAAGTTGCTAGAAGCAGCCGTCTGCGAAGCCTGTTCCTGCTGCTGCT
TGCACCCCTCTTGGCGGTACGTTTTGAGGACGACAAAGAACACAGTGGTA
GCTAGGGACGGAGAGTGAGGAAAGGACATGGTGTGAGATGTCGAATGGCT
GGGTGGGAGAGTCAGTCGTGGCAAGGATACAAATTGAAGATCTATGTGCC
ATCCATCGAGCCGTGCCAAGCCCCTCATGGCGTGGTAATTGCTGCCTCCC
ATGGCCTCCTACCTCTCCTTCTCTTCCAGTATCCTTCCAGCACCAAGCAC
ATCTTAGTGTTGAGCTCAAAATTCACTCGTACTCTGCATCGTCCTCTACT
TCCTTTCCCCCTCCCTCCATCCCCCCCCCTCCCAGGCGGAGCTAATCCAA
GTCCAGGTTGTCGTCCGGGCGGGCGCCCACAAATGGGCCCCTTACAATAA
GCCCAAGCGGGAGGTGGGCAGTAGCTTGCTGCCCTCTGGGTACGTGGGCA
TGGAGCAGCTGGGCAAGATTCTCAAGGTGAGGGCAGGAAGGAGGAGGGCA
GGGAGGGTGGGAGTGAGGGAAGGAGGGAGGGAGGGCGGGAAGTCTGGTGC
GTGGAGTGGGGGAGGGGAAGACATAAAGAGAAAGAGATGGTTATGACATT
CAAGCAAAGCACAAACTAACACGTCTGTGCTCCTCATCACAGGCCCGCTA
TCTCGGCAAGGCTGCCACCGTGCCTTTGGCCAACGTCACCGAGTGAGTTT
CCTCCCTCCCTCCCTCCCACCCCCCGCTCCCTCCTCCCCCCTCATTCCTT
GTCTAAACGTCCCTCCTCCTCCTCCTCCTTCCCCCCCCTCATCAGCATCT
ACAAACCCGGCGACGCGCTTGTTCGCGCCATGTCGCGGGACCAAACCGTC
TCCTCCTCGGATGCCATGGTGTACGGCATGTGGAATCCGATTGCCGCCGC
GGGGAGGGCTGCGCCCCTGACTGGAGGATACCAGCCCGTTCCTGTCTTCA
CCATCAGGTATAGAGGGAGGAAGAGAGGGGGGGTGAGTGCGGATGTCTTA
TCGCTGCGCCCAGCTGGAGGAGAAGACGACGGTGTCTCTCCCTCTTTTGT
CCCCTGCAACCTCACTCCTCCCTCCCTCCCTCCCTCCCCCTCTTCCTCTT
CCGTTTAGCCGTGGAGTGGATTACCTGCTGTCGGCTTATAGTGTGTGTCC
CGCCATTGACGCGCACGTCGAGGCTTTCTTCAACAGCTCCGACTTCAAGG
AGAAGGAGGTTGCTACGGCCGACGTCCGCTCCCAACTCGGTACGCCCCCC
CCTCCTTTCCTCCCTCCCTCCCTCGCCTTCCTCATCCCCTCCCCCCCTTT
CTCCTTACCCCCTCCCTTCCCAGGCACCCTCCTCAATATGACGCACCAGC
TGGTGGACATGCCGTTGATGTACGACCGAGTCACCCTCGCCACAAAGTAC
GGCGATGTGCCCAGTGGCGGAGCGTAAGTCCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCTCGCTCATCGTGATTG
TGATGGCTCACTTCTTCTTTCATCCTTTCTGTCACTCCCTCCCACCCTCC
CTCCCTCTCTAGGATCCTCCCCGCCCTGACGACTGCCCAGCTCGCGGCCT
TGGCGGACATGGCCGACTTCGTCGAGGTAAGCACCCTCCCTCCTTCCCTC
CTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCAATTTGCCTTCCTTCCA
TCACCCCGGCCACTCATCTTTCTTGCCCTTCTCACCCCTCCCGCCCTCCC
TCCCGCCCTCCCTCCCGCCCTCCCTCACGTCCCAGCACGGCAAATACTCG
AATCGTGACACGGGTGTCCTGTGTGGTGGGCCCTTGCTCGCCGAGGTACG
TCCTCTAAGGAGGGAGGGAGGGAGGAAGGGAAGGGAGAAGAGGGAGAGAA
GGACAGTCAAGTGATAATTACCCTCTTGGGGTTTTCGGTCCTTTCATTGA
CTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTTCAGATCTTCAGTCGCATTGACTCGGTGGTTAGCGGTGCGAGCC
TGCGGGCCGCTCCCTTCCTGGCCTATATGGGCACGCACTCGACCATCAAC
TGCCTAATCTCCGCGCTCGATGCCCCCGACACGGTGGTAAGCAAGCCCGC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCTCTGCCC
GAGTCAGTTTGTCTTCATCTCGGAGAGGATGATCTGTAGTCTAACCCACC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCAGATGACGAACCG
CATCCATCCCTACGGCTCGGCCGTCATCTTCGAGACGCACACGGTGGGGA
AGGAGCACTACCTGAATACCCTCTATTTGGAGGGAGGCACCGCCGACTTC
CAGAAGGTTTACTTGAGTGAGTCCTCCCTCCTTCCCTCCCTCCCTCCCTC
GCCCCCCCCCCTCCCTCATATTGGTCCCTTGGCCTTTTGACGGCCTCTTG
TCCGAGAACCCCTCCATCGCTCAGGTCTCAACCCTCCCTCCCTCCCTCCC
TCCCTCCCCTGTAGACAAGAAGGCCGAGGGTCCCTGTGGCCAGGGCGGGA
AGCCGTGTGTCCTGGCGGACGCTCAGCAGCTGCTCGTTGAGAGGATGGAA
CCCAGCGTGATCGGCTGGTGCGACGCCTGCAGCAGGTAGGGAGGGAGGGC
GGGAGGGAGGGCGGGAGGGAGGGAGGGAGGGCGGGAGGGAGGGAGGGTGG
GCGGGGGGGAAAAGAGGGCGGGAGAAGGGAGGGAGGGAACGGAGGATGGG
GTTGTATGAATCGCAGTGGCTGCTTTCCTCTTGTCATCCACCCTCTGCAT
CCGCTACTGCGGAATCCGCCTTGCCTTCTGACACCAGCCGGCCCTGCCTC
CCTCCCTCCCTCCCTCCCTCCCTCGTGCAGCTACTTCATGCCGGCGTGCA
ACCAAGCCATGCAGATGAAGATGAGCGAAGCCCTGGAGATGGACTTCGAG
AGCACGGAGCGACGCAATCGTCTGACCAACGTGGGTGCCGCCTTCATCGG
TAAGGAGGGAGGGAGGGAGGATGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGATTATTCTCTGGCTGGAAGTCTCTCCCTTTAACGATAAAA
TTTTAGAAACAAACTTCCTCATTTCATTTCCATTTCTTCCTCCCTCCTTC
CCTTCCTCCCTCCCTCAGGCCTCTTCATGGGCGCCCTCCTGGTGGTGCTC
TCCGCCTTCTTGGGGCCCAAAATTAAACGACGGTGGAGGGCGAGGCGGAC
AGAGGCCGCGGGCTATGTGTCCGGGGAAGAGGGAGGGATGGAGGGCGAGG
GGGAGATCGAGGCCCAGGGGAGGAGGAGGGGGGTGGACGAGGAAGGCACG
GCTATTTAA

Coding sequence (CDS) from alignment at chr7:1258188..1261646-

>NO07G04490.1 ID=NO07G04490.1|Name=NO07G04490.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr7:1258188..1261646- (Nannochloropsis oceanica)
ATGGAAGTTGCTAGAAGCAGCCGTCTGCGAAGCCTGTTCCTGCTGCTGCT
TGCACCCCTCTTGGCGGCGGAGCTAATCCAAGTCCAGGTTGTCGTCCGGG
CGGGCGCCCACAAATGGGCCCCTTACAATAAGCCCAAGCGGGAGGTGGGC
AGTAGCTTGCTGCCCTCTGGGTACGTGGGCATGGAGCAGCTGGGCAAGAT
TCTCAAGGCCCGCTATCTCGGCAAGGCTGCCACCGTGCCTTTGGCCAACG
TCACCGACATCTACAAACCCGGCGACGCGCTTGTTCGCGCCATGTCGCGG
GACCAAACCGTCTCCTCCTCGGATGCCATGGTGTACGGCATGTGGAATCC
GATTGCCGCCGCGGGGAGGGCTGCGCCCCTGACTGGAGGATACCAGCCCG
TTCCTGTCTTCACCATCAGCCGTGGAGTGGATTACCTGCTGTCGGCTTAT
AGTGTGTGTCCCGCCATTGACGCGCACGTCGAGGCTTTCTTCAACAGCTC
CGACTTCAAGGAGAAGGAGGTTGCTACGGCCGACGTCCGCTCCCAACTCG
GCACCCTCCTCAATATGACGCACCAGCTGGTGGACATGCCGTTGATGTAC
GACCGAGTCACCCTCGCCACAAAGTACGGCGATGTGCCCAGTGGCGGAGC
GATCCTCCCCGCCCTGACGACTGCCCAGCTCGCGGCCTTGGCGGACATGG
CCGACTTCGTCGAGCACGGCAAATACTCGAATCGTGACACGGGTGTCCTG
TGTGGTGGGCCCTTGCTCGCCGAGATCTTCAGTCGCATTGACTCGGTGGT
TAGCGGTGCGAGCCTGCGGGCCGCTCCCTTCCTGGCCTATATGGGCACGC
ACTCGACCATCAACTGCCTAATCTCCGCGCTCGATGCCCCCGACACGGTG
ATGACGAACCGCATCCATCCCTACGGCTCGGCCGTCATCTTCGAGACGCA
CACGGTGGGGAAGGAGCACTACCTGAATACCCTCTATTTGGAGGGAGGCA
CCGCCGACTTCCAGAAGGTTTACTTGAACAAGAAGGCCGAGGGTCCCTGT
GGCCAGGGCGGGAAGCCGTGTGTCCTGGCGGACGCTCAGCAGCTGCTCGT
TGAGAGGATGGAACCCAGCGTGATCGGCTGGTGCGACGCCTGCAGCAGCT
ACTTCATGCCGGCGTGCAACCAAGCCATGCAGATGAAGATGAGCGAAGCC
CTGGAGATGGACTTCGAGAGCACGGAGCGACGCAATCGTCTGACCAACGT
GGGTGCCGCCTTCATCGGCCTCTTCATGGGCGCCCTCCTGGTGGTGCTCT
CCGCCTTCTTGGGGCCCAAAATTAAACGACGGTGGAGGGCGAGGCGGACA
GAGGCCGCGGGCTATGTGTCCGGGGAAGAGGGAGGGATGGAGGGCGAGGG
GGAGATCGAGGCCCAGGGGAGGAGGAGGGGGGTGGACGAGGAAGGCACGG
CTATTTAA

Synonyms

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