NO07G04150.1, NO07G04150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04150.1
Unique NameNO07G04150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1577
Alignment locationchr7:1154627..1156557 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1154627..1156557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04150.1 vs.
Match: EWM26956.1 (had-like protein [Nannochloropsis gaditana])

HSP 1 Score: 151.4 bits (381), Expect = 5.900e-33
Identity = 89/171 (52.05%), Postives = 117/171 (68.42%), Query Frame = 0 
Query:  220 EVLGALHRTRTVTLAIASRAPNTQAAVQMLQLMKLHAFFLASPSLSSSNPSFSSPSSVVVLEKGDEEGREGEEGKS---RSDEMLMHISAEGFGKAKHLREILRTAKAEAHQVLFFDDQMGNLQDARKLGCCAQVVTSTEGLSWTALESGLRVYREQWRARRMMAKHFVKK 388
            +V+ ALH      LAIASRAP++ AAV+ML+LM+LHAFF     LS S+P            +G +E  E +E +    +  + L+ I+ +G+GK KHLR+ILR   A+ H VLFFDDQ GNL+DAR+LGCCAQ V+  +GLSW +LE GLR+YRE+ RAR +MAKHFVKK
Sbjct:  183 QVITALHGV--TRLAIASRAPDSMAAVKMLKLMELHAFFRLP--LSQSSPPRG---------QGADEKTETQEERGIGPQEPQELIAIANDGWGKTKHLRDILRWTGAQPHDVLFFDDQKGNLEDARRLGCCAQSVSCADGLSWASLEKGLRLYREKGRARSIMAKHFVKK 340
The following BLAST results are available for this feature:
BLAST of NO07G04150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26956.15.900e-3352.05had-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04150NO07G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04150.1NO07G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04150.1.cds1NO07G04150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04150.1.cds2NO07G04150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04150.1.cds3NO07G04150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04150.1.cds4NO07G04150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04150.1 ID=NO07G04150.1|Name=NO07G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp
GCTCACGTGCTTGCTTACGGTGTTGCTTGTCAACCTCCCCGCTCTTTCTT
CCTTTCTTCACAATCAGACGCAGATCCCCCACTTCCTACGCACACAGGGC
CGGCAGAGAGCATGGAAGAACCATTACAACAAGGAGACCCACAGCGGCGG
AAGCATATCACAAAACGGCCCGCGGAAGGGCCGTTTTGCGGGGATAGGCC
TGCCTCCTGTACCTACTCTAATTATCCGCAATTGCAGCCCCAACAGCATC
CGCAGCAGCATGAGAGGGATGACGAGGAAGAGGAACAGCGTAAGCGGGTC
CGTGGCAGTGCTGCTATTGGTACTCTCACAACGAGCGGCAGCACAAGCAT
CCTCATAGTCCTCGACAGTGACGAGGAGGTGGCGGACGAGGAGCGTCTAG
GGGAAGAGAGGATAGCACGAACGCAATCGGCAACAACAAATAATGCACCA
GTTTCACCGTTGCTGCCGATACCACCCTGTCTACCCAGATCTTCTCATTG
CCATCACCCCCGTCTTCACGCCCTCCTTGCCTCCCTTTCCTCCTCCTCAT
CCACCTCTTTCGAACTCCCTTCCCTCATCATCGTCGACTTGGACTACACT
CTTTGGAAAGGCAACATTTCGGATCAACTTCCTCCCTTTGCCGCAACCAA
CCATCCCGACCACGTGCACGTTGGCGGCGTCTTCAGTAGTGGCGGTTGGG
GAGGAGGGCGAGGTGGAGGAGGAGGAAGAGGTGGGCCGACCCTCTTTCGT
TTGTTCCCGGAAACGCGCGAGGTTCTCGGTGCTCTTCACCGCACTAGAAC
TGTCACCCTAGCCATTGCCTCCCGCGCGCCCAACACCCAGGCAGCCGTCC
AAATGCTGCAATTAATGAAACTGCATGCTTTCTTCCTCGCTTCTCCCTCA
CTCTCCTCCTCCAACCCCTCTTTCTCTTCCCCCTCCTCCGTCGTGGTGTT
GGAAAAGGGGGACGAGGAAGGAAGGGAGGGAGAAGAAGGCAAAAGCAGAA
GCGACGAGATGCTCATGCATATTTCCGCCGAGGGCTTTGGCAAGGCGAAG
CACCTTCGGGAGATTCTGAGGACCGCCAAAGCAGAGGCGCACCAAGTCTT
GTTTTTCGACGACCAAATGGGTAATCTGCAAGATGCCCGCAAGCTGGGTT
GTTGTGCTCAAGTTGTCACATCGACTGAGGGCCTGTCGTGGACTGCCCTA
GAGAGTGGCTTGCGTGTGTACAGAGAGCAATGGCGGGCTCGGAGGATGAT
GGCAAAGCATTTTGTGAAGAAGTAGGTGGAAAGAGGAGGAAGCGATGGAC
AAAGATATGTAAAGAAACAATATATGGGGCAAACAGAACGTAAAAGAATC
AATATGTACCCCTCGATGCTGCATTTCTTTTATTAATCAATATGCAGGGT
TGAGATAAAAGCGATGAAATGGGCGTTGTTTGCAGACCAAAACACGCTCT
CGCTCAGTTCATGCCCTTTATGCGGCCTATTTGAGGACATGCAGTAAGTA
ATGATGCACTAAACAAGCATTGACGCAATGCCAAAGATCTATGAGGTATA
TTGTGACATTTGCGACGCATCCTTTCA
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protein sequence of NO07G04150.1

>NO07G04150.1-protein ID=NO07G04150.1-protein|Name=NO07G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MEEPLQQGDPQRRKHITKRPAEGPFCGDRPASCTYSNYPQLQPQQHPQQH
ERDDEEEEQRKRVRGSAAIGTLTTSGSTSILIVLDSDEEVADEERLGEER
IARTQSATTNNAPVSPLLPIPPCLPRSSHCHHPRLHALLASLSSSSSTSF
ELPSLIIVDLDYTLWKGNISDQLPPFAATNHPDHVHVGGVFSSGGWGGGR
GGGGGRGGPTLFRLFPETREVLGALHRTRTVTLAIASRAPNTQAAVQMLQ
LMKLHAFFLASPSLSSSNPSFSSPSSVVVLEKGDEEGREGEEGKSRSDEM
LMHISAEGFGKAKHLREILRTAKAEAHQVLFFDDQMGNLQDARKLGCCAQ
VVTSTEGLSWTALESGLRVYREQWRARRMMAKHFVKK*
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mRNA from alignment at chr7:1154627..1156557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04150.1 ID=NO07G04150.1|Name=NO07G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1931bp|location=Sequence derived from alignment at chr7:1154627..1156557+ (Nannochloropsis oceanica)
GCTCACGTGCTTGCTTACGGTGTTGCTTGTCAACCTCCCCGCTCTTTCTT
CCTTTCTTCACAATCAGACGCAGATCCCCCACTTCCTACGCACACAGGGC
CGGCAGAGAGCATGGAAGAACCATTACAACAAGGAGACCCACAGCGGCGG
AAGCATATCACAAAACGGCCCGCGGAAGGGCCGTTTTGCGGGGATAGGCC
TGCCTCCTGTACCTACTCTAATTATCCGCAATTGCAGCCCCAACAGCATC
CGCAGCAGCATGAGAGGGATGACGAGGAAGAGGAACAGCGTAAGCGGGTC
CGTGGCAGTGCTGCTATTGGTACTCTCACAACGAGCGGCAGCACAAGCAT
CCTCATAGTCCTCGACAGTGACGAGGAGGTGGCGGACGAGGAGCGTCTAG
GGGAAGAGAGGATAGCACGAACGCAATCGGCAACAACAAATAATGCACCA
GTTTCACCGTTGCTGCCGATACCACCCTGTCTACCCAGATCTTCTCATTG
CCATCACCCCCGTCTTCACGCCCTCCTTGCCTCCCTTTCCTCCTCCTCAT
CCACCTCTTTCGAACTCCCTTCCCTCATCATCGTCGACTTGGACTACACT
CTTTGGAAAGGCAACATTTCGGATCAACTTCCTCCCTTTGCCGCAACCAA
CCATCCCGACCACGTGCACGTTGGCGGCGTCTTCAGTAGTGGCGGTTGGG
GAGGAGGGCGAGGTGGAGGAGGAGGAAGAGGTGGGCCGACCCTCTTTCGT
TTGTTCCCGGAAACGCGCGAGGTAGGTCTTGTCTCCCGATGTTCGTGTCT
GGGGTCCTCTTACTTTTTATCTCTTCCCCCTTCCTCCTCTTAATATCTTT
CTTGGTCCGTTTTCCCTGCTTCCCCTTCCCTCCTCCCATTTCCTTAGGTT
CTCGGTGCTCTTCACCGCACTAGAACTGTCACCCTAGCCATTGCCTCCCG
CGCGCCCAACACCCAGGCAGCCGTCCAAATGCTGCAATTAATGAAACTGC
ATGCTTTCTTCCTCGCTTCTCCCTCACTCTCCTCCTCCAACCCCTCTTTC
TCTTCCCCCTCCTCCGTCGTGGTGTTGGAAAAGGGGGACGAGGAAGGAAG
GGAGGGAGAAGAAGGCAAAAGCAGAAGCGACGAGATGCTCATGCATATTT
CCGCCGAGGGCTTTGGCAAGGCGAAGCACCTTCGGGAGATTCTGAGGTAT
GGCACCCAGAGACAAGTCGGCCTTACTCCCTTCTCTTATCGAAGCCTCTT
CGACCCTTCCGTCTCATCCCACTCATTTTTTTTTAACCCTCACAAAACAG
GACCGCCAAAGCAGAGGCGCACCAAGTCTTGTTTTTCGACGACCAAATGG
GTAATCTGCAAGGTCCGTAGTGGCGCTTGTCTTTCTTTTCACTCCATGCT
GACATACTTAACGTGACTTTCCGATGTATGTATGTTTTTGTCCCTCCCCC
TCATTCAACGCCTCATTCGCTGCCTCTTTGTCACAGATGCCCGCAAGCTG
GGTTGTTGTGCTCAAGTTGTCACATCGACTGAGGGCCTGTCGTGGACTGC
CCTAGAGAGTGGCTTGCGTGTGTACAGAGAGCAATGGCGGGCTCGGAGGA
TGATGGCAAAGCATTTTGTGAAGAAGTAGGTGGAAAGAGGAGGAAGCGAT
GGACAAAGATATGTAAAGAAACAATATATGGGGCAAACAGAACGTAAAAG
AATCAATATGTACCCCTCGATGCTGCATTTCTTTTATTAATCAATATGCA
GGGTTGAGATAAAAGCGATGAAATGGGCGTTGTTTGCAGACCAAAACACG
CTCTCGCTCAGTTCATGCCCTTTATGCGGCCTATTTGAGGACATGCAGTA
AGTAATGATGCACTAAACAAGCATTGACGCAATGCCAAAGATCTATGAGG
TATATTGTGACATTTGCGACGCATCCTTTCA
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Coding sequence (CDS) from alignment at chr7:1154627..1156557+

>NO07G04150.1 ID=NO07G04150.1|Name=NO07G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr7:1154627..1156557+ (Nannochloropsis oceanica)
ATGGAAGAACCATTACAACAAGGAGACCCACAGCGGCGGAAGCATATCAC
AAAACGGCCCGCGGAAGGGCCGTTTTGCGGGGATAGGCCTGCCTCCTGTA
CCTACTCTAATTATCCGCAATTGCAGCCCCAACAGCATCCGCAGCAGCAT
GAGAGGGATGACGAGGAAGAGGAACAGCGTAAGCGGGTCCGTGGCAGTGC
TGCTATTGGTACTCTCACAACGAGCGGCAGCACAAGCATCCTCATAGTCC
TCGACAGTGACGAGGAGGTGGCGGACGAGGAGCGTCTAGGGGAAGAGAGG
ATAGCACGAACGCAATCGGCAACAACAAATAATGCACCAGTTTCACCGTT
GCTGCCGATACCACCCTGTCTACCCAGATCTTCTCATTGCCATCACCCCC
GTCTTCACGCCCTCCTTGCCTCCCTTTCCTCCTCCTCATCCACCTCTTTC
GAACTCCCTTCCCTCATCATCGTCGACTTGGACTACACTCTTTGGAAAGG
CAACATTTCGGATCAACTTCCTCCCTTTGCCGCAACCAACCATCCCGACC
ACGTGCACGTTGGCGGCGTCTTCAGTAGTGGCGGTTGGGGAGGAGGGCGA
GGTGGAGGAGGAGGAAGAGGTGGGCCGACCCTCTTTCGTTTGTTCCCGGA
AACGCGCGAGGTTCTCGGTGCTCTTCACCGCACTAGAACTGTCACCCTAG
CCATTGCCTCCCGCGCGCCCAACACCCAGGCAGCCGTCCAAATGCTGCAA
TTAATGAAACTGCATGCTTTCTTCCTCGCTTCTCCCTCACTCTCCTCCTC
CAACCCCTCTTTCTCTTCCCCCTCCTCCGTCGTGGTGTTGGAAAAGGGGG
ACGAGGAAGGAAGGGAGGGAGAAGAAGGCAAAAGCAGAAGCGACGAGATG
CTCATGCATATTTCCGCCGAGGGCTTTGGCAAGGCGAAGCACCTTCGGGA
GATTCTGAGGACCGCCAAAGCAGAGGCGCACCAAGTCTTGTTTTTCGACG
ACCAAATGGGTAATCTGCAAGATGCCCGCAAGCTGGGTTGTTGTGCTCAA
GTTGTCACATCGACTGAGGGCCTGTCGTGGACTGCCCTAGAGAGTGGCTT
GCGTGTGTACAGAGAGCAATGGCGGGCTCGGAGGATGATGGCAAAGCATT
TTGTGAAGAAGTAG
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Synonyms
Publications