NO07G04040.1, NO07G04040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04040.1
Unique NameNO07G04040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length931
Alignment locationchr7:1125567..1126856 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1125567..1126856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G04040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04040NO07G04040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04040.1NO07G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04040.1.cds1NO07G04040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04040.1.cds2NO07G04040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04040.1.cds3NO07G04040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04040.1 ID=NO07G04040.1|Name=NO07G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
AGCAGCATTAAAATGTCGAGCAAGGATACTCCCCCGCCTCCGTCATTCCC
CATGCCTCCTCCAACTCGGGGTGGCTCTTCTTCACTACTGTCGCGCGTGC
AAGCTTTCTTGCCCCAAATTGCGGAGGCAAATGCCAAACTGGAGGAGCGG
CTGCTGGCGGGCCAAGGAGAGGATGTGCGCATCGACACCAGCCTGCTGGA
GGAGGACGCAGCAGAGAAGGACGGAGAGAATGAAAACGCTAAGGGGCCGC
AACAGCCCGTCATCAGCATGAATTTGGCACTGGGACCTGTGGATGAGACG
TTGGCGGCAGCTTTGGAAGGGGACGAGGGGAGGGAGGGAGGACAGGAGCT
CAACGTGCAGAGTGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGAGGAAGGGAAGAGGACAGC
AGGACCCGCGTGGTGGTCTCGTTGTTGGGAGAAGGAAAGAATGAAAAAAG
AAAGGAAGAGAGGAATAAGGAGGAAGAGAAGGAGGAAGAAGCAAGGGTCA
AAGTTTCTAAGAAGGCGCTCATTCAGGAGCTCTCATGAGAAACCTCCAAA
ATCAAAAACAATAACAGCAGTAACTAGAGAATAGAGAAGAAAAGACAGAG
CACAAGCACCCAACTTGCTCACAAAGCATGCCCGGCAGTCAATTGAAGCA
ACGAACACCAATAAGTCTGCTTCAGACAAATAAAATACAAAAAAGAATTG
AAAGAAGGGCGCACCAAACTATCCGTCGTTGGTGTTGACGTACACTTCTT
TCTCCTCTCCTTCCTCCGGACAGATGGAATGGAGGTCCTCATCTTTGATT
TTTTTGGAATGATAAATGGCGCGAACATTTAGACAAGCAGGCGCACATGC
ATCTTTGTAAAAGAAAAACAACAAGGACAGC
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protein sequence of NO07G04040.1

>NO07G04040.1-protein ID=NO07G04040.1-protein|Name=NO07G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MSSKDTPPPPSFPMPPPTRGGSSSLLSRVQAFLPQIAEANAKLEERLLAG
QGEDVRIDTSLLEEDAAEKDGENENAKGPQQPVISMNLALGPVDETLAAA
LEGDEGREGGQELNVQSEEEEEEKEEEEEEEEEEEEEEGRGREEDSRTRV
VVSLLGEGKNEKRKEERNKEEEKEEEARVKVSKKALIQELS*
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mRNA from alignment at chr7:1125567..1126856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04040.1 ID=NO07G04040.1|Name=NO07G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp|location=Sequence derived from alignment at chr7:1125567..1126856+ (Nannochloropsis oceanica)
AGCAGCATTAAAATGTCGAGCAAGGATACTCCCCCGCCTCCGTCATTCCC
CATGCCTCCTCCAACTCGGGGTGGCTCTTCTTCACGTACGTAGGTCGTGG
AGGAATCCTGAGTTTCAACGCGTAGCCCTCACATATCCTTTCTACAAATA
CTATTACCCTTGTAGTACTGTCGCGCGTGCAAGCTTTCTTGCCCCAAATT
GCGGAGGCAAATGCCAAACTGGAGGAGCGGCTGCTGGCGGGCCAAGGAGA
GGGTACGTTATTGTATAATTATGTCGAGGTGGTACCTTAAATAGTCGCGA
CTGTCGATGAATGAATGTGAATCGGGTGATGTGTGATTAGCCTGTGTCCT
TTGTGCGTGCAAGCGCAGCGATGGGATGGATATTGGTCCCGGGGTGCAAC
GTATAAGGAGTAAGCCGTTTGTCCCTGAGCTATTGAGAGAGCTTTAAATG
TCTTGTTGATTATTTATCTTCCACACTTTACAAATCAGCTCTCATAAGCC
CCTTCCTCTCCCTCTATACGTCCCCTTACAGATGTGCGCATCGACACCAG
CCTGCTGGAGGAGGACGCAGCAGAGAAGGACGGAGAGAATGAAAACGCTA
AGGGGCCGCAACAGCCCGTCATCAGCATGAATTTGGCACTGGGACCTGTG
GATGAGACGTTGGCGGCAGCTTTGGAAGGGGACGAGGGGAGGGAGGGAGG
ACAGGAGCTCAACGTGCAGAGTGAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGAGGAAGGGAA
GAGGACAGCAGGACCCGCGTGGTGGTCTCGTTGTTGGGAGAAGGAAAGAA
TGAAAAAAGAAAGGAAGAGAGGAATAAGGAGGAAGAGAAGGAGGAAGAAG
CAAGGGTCAAAGTTTCTAAGAAGGCGCTCATTCAGGAGCTCTCATGAGAA
ACCTCCAAAATCAAAAACAATAACAGCAGTAACTAGAGAATAGAGAAGAA
AAGACAGAGCACAAGCACCCAACTTGCTCACAAAGCATGCCCGGCAGTCA
ATTGAAGCAACGAACACCAATAAGTCTGCTTCAGACAAATAAAATACAAA
AAAGAATTGAAAGAAGGGCGCACCAAACTATCCGTCGTTGGTGTTGACGT
ACACTTCTTTCTCCTCTCCTTCCTCCGGACAGATGGAATGGAGGTCCTCA
TCTTTGATTTTTTTGGAATGATAAATGGCGCGAACATTTAGACAAGCAGG
CGCACATGCATCTTTGTAAAAGAAAAACAACAAGGACAGC
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Coding sequence (CDS) from alignment at chr7:1125567..1126856+

>NO07G04040.1 ID=NO07G04040.1|Name=NO07G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr7:1125567..1126856+ (Nannochloropsis oceanica)
ATGTCGAGCAAGGATACTCCCCCGCCTCCGTCATTCCCCATGCCTCCTCC
AACTCGGGGTGGCTCTTCTTCACTACTGTCGCGCGTGCAAGCTTTCTTGC
CCCAAATTGCGGAGGCAAATGCCAAACTGGAGGAGCGGCTGCTGGCGGGC
CAAGGAGAGGATGTGCGCATCGACACCAGCCTGCTGGAGGAGGACGCAGC
AGAGAAGGACGGAGAGAATGAAAACGCTAAGGGGCCGCAACAGCCCGTCA
TCAGCATGAATTTGGCACTGGGACCTGTGGATGAGACGTTGGCGGCAGCT
TTGGAAGGGGACGAGGGGAGGGAGGGAGGACAGGAGCTCAACGTGCAGAG
TGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGAGAGGAAGGGAAGAGGACAGCAGGACCCGCGTG
GTGGTCTCGTTGTTGGGAGAAGGAAAGAATGAAAAAAGAAAGGAAGAGAG
GAATAAGGAGGAAGAGAAGGAGGAAGAAGCAAGGGTCAAAGTTTCTAAGA
AGGCGCTCATTCAGGAGCTCTCATGA
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Synonyms
Publications