|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr7 | genome | chr7:1122429..1125310 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G04030.2 vs.
Match: XP_005853362.1 (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]; EKU22997.1 major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 517.7 bits (1332), Expect = 3.500e-143 Identity = 271/440 (61.59%), Postives = 334/440 (75.91%), Query Frame = 0
Query: 1 MEASPRKRHGGA-ANIAGPGTSPSYMMELPITPVAVEAEEIVILSPSK-GFTTPLSKGGGSSGRRHHVPPFHSLRHKDPAI--VVKRARSAQELVRAKKLLRALGFFYHLSLGVLFMTFTELLLNDFDNNYANTAAFLGTCAGVERGVQFFTSPFLGNLSDSVGRRPILFMSLLLHLASLLVVAVIPTRHTVFVYFMINGGFNVTYGMINATVADLCTAQAKTGKGELAQQYGKLGMAVGLSMILGPAIGPVLQKMNVLYPVYLSLLFLVISLGLAWFTPESLDDKYRAGSIDWKKASPFYALRKSLKYRRFVFFAAPFFLSQLSEGVYHFMVLYTKVRIGWDFVALGIYISIVGICLAVVQGNLKFIVPKIISENGSVTTGLLGHAVAMGVTSMASEGWMMGLCIIPQVRIRFFFQNRAINFPSLLRTLCTFLSPSVPG 437
M+ASPRKR GA N PG PS M ELPITPV V E++VILSP++ G TTPL G G R V PF S+ D + A++LVR KKL RALGFFYH+S GVLF TFTELLLNDF NNY+ TAAFLG CAGVERGVQFF+SP LGNLSDSVGRRPIL +SLLLH ASL+VVA++PTRH+V +YF+ING NVT GMINA VADLC+AQ KTG+GELAQQYG+LGMA+GLSMILGPAIGPVLQKMNVLYP+YLSL FL +S+ +AW ESL +RA +I+W+KA+PF+ LR+++++RRF F+ PFFL+QL+E VY F+VLYTK R GW ++ LG Y+SI+GICLA++QG+L++ VP+ +SENG VT GL GHA+AMGV S+A+ GWMMGL I+PQ+ ++ P L+ L ++P G
Sbjct: 1 MDASPRKRVNGAYGNRLSPGGGPSGMTELPITPVLVNEEKVVILSPTEEGITTPLRTGDGG---RRQVTPFDSIHASDNLENQIHGHNHHAKQLVRTKKLCRALGFFYHISFGVLFTTFTELLLNDFGNNYSQTAAFLGVCAGVERGVQFFSSPVLGNLSDSVGRRPILLLSLLLHFASLMVVAILPTRHSVLIYFLINGASNVTLGMINAIVADLCSAQGKTGEGELAQQYGRLGMAIGLSMILGPAIGPVLQKMNVLYPIYLSLAFLGVSIVIAWSMAESLQACHRALNINWRKANPFFVLREAMRFRRFQLFSGPFFLNQLTECVYQFVVLYTKRRFGWGYMTLGFYVSIIGICLAIIQGSLRYFVPRFVSENGCVTVGLFGHALAMGVISVATHGWMMGLTILPQMA-------ASLKNPGLMSALAKGIAPEQQG 430
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G04030.2 ID=NO07G04030.2|Name=NO07G04030.2|organism=Nannochloropsis oceanica|type=mRNA|length=2728bp
CTTTTTGGAAGCCATTACCGAACCCCTTAATCCGTGGAAACATTGGTCTA
CGGCTCATTCTCAATAACTTGTAGGACTGGACAACCATGCCAAGCTTTAA
TGCGGATTTTGCTGCTTTCTCTAATCCAAACTTTTGGCGCAGGCGTCACA
AACGTTTTTCACAAGCGCCCCCACTTCCCTCTTCGTCTGCTCTCGCTTAC
GTGCTCACATATGTAATTGACATCGCATAAGTCCTGACGAACCTTATACA
CAGTATCATCTCTCACGTGCTTCCCAATCCTTCTCATCTCACACATGTAC
ATCCACATAGCATGGAGGCAAGCCCGCGGAAGCGCCATGGTGGGGCTGCC
AACATCGCAGGGCCAGGGACTAGTCCGTCGTACATGATGGAGCTTCCGAT
CACGCCAGTAGCCGTCGAAGCAGAGGAAATTGTCATTCTCAGCCCCTCCA
AGGGCTTTACCACACCCTTGTCGAAGGGGGGGGGCAGTTCCGGCCGCCGC
CACCATGTCCCACCGTTCCATTCACTAAGGCACAAGGACCCTGCAATAGT
CGTGAAGCGTGCACGTAGCGCACAGGAATTGGTACGGGCTAAAAAGCTAT
TGCGTGCCTTGGGTTTTTTCTACCATTTGAGCTTGGGTGTACTGTTCATG
ACATTTACCGAGCTTCTTCTGAATGATTTCGACAACAATTATGCCAACAC
GGCCGCTTTCCTGGGGACGTGCGCGGGCGTGGAACGAGGAGTGCAGTTCT
TCACATCTCCGTTCCTTGGTAATCTGAGTGATAGCGTTGGTCGACGGCCC
ATCCTGTTTATGTCCCTGCTCCTGCATCTGGCCTCCCTGCTGGTCGTGGC
CGTCATCCCCACGCGTCACACAGTCTTTGTGTATTTTATGATTAATGGCG
GCTTCAACGTGACGTATGGAATGATCAACGCAACCGTCGCAGATCTATGC
ACCGCCCAGGCAAAGACAGGGAAGGGGGAGCTGGCTCAACAGTACGGAAA
ACTGGGCATGGCTGTGGGGCTTAGCATGATTCTCGGGCCCGCTATTGGCC
CTGTCCTCCAAAAGATGAACGTGCTCTACCCCGTCTACCTCTCCCTCCTC
TTCCTGGTTATCTCCCTCGGCCTTGCGTGGTTTACGCCCGAGAGCCTGGA
CGACAAATACCGAGCGGGGAGTATCGACTGGAAGAAAGCCAGCCCGTTCT
ATGCCCTTCGCAAATCCCTGAAATACCGTCGCTTTGTCTTCTTCGCCGCG
CCCTTTTTTCTTTCCCAGCTGTCGGAGGGGGTGTATCACTTTATGGTATT
GTACACCAAGGTCCGGATCGGGTGGGATTTTGTGGCTTTAGGCATATATA
TCTCGATTGTTGGCATATGTCTGGCGGTGGTACAGGGAAATTTAAAGTTT
ATCGTCCCCAAGATAATTAGCGAGAATGGCAGTGTGACCACGGGGTTGCT
TGGGCATGCGGTGGCGATGGGTGTCACGTCGATGGCGAGCGAGGGGTGGA
TGATGGGGCTGTGCATTATACCGCAGGTGCGTATACGTTTCTTTTTTCAA
AATCGAGCCATTAACTTCCCTTCCCTCCTTCGCACTCTTTGTACCTTCCT
CTCTCCCTCTGTCCCTGGACGATAGATAGCTTCGATACTTACTGCATTCA
TAAATGCCTCTTCCCTCCCTCCCTCTCTCCCTCCTTCTCCCCCTTCCTCC
GCCAAAGATGGTTGCTTCTCTGAAAGGGCCTGGTCTAATGTCAGCGTTGG
CCACCGGGGTCTCCCCGGAGGAGCAGGGGGTGTTGCAGGGGTCTGTATCC
AGTCTACGCGTCCTGAGCAAAGCGATAGGTGGACCGTTATTCGGTGCCGT
GATGGCCTTCTCCTTGAAGGAAGCAGGGGGGGAGGGAGGGAAGGAGGCAG
GGGCAAAAGGGGGGTGGATTCTGGGATTGCCCTTCATAGTGGCCGGGATC
TTCGATTTGGTGGCGGTAGCGATTTGCTTCGGTGTGTTTAAAGTCTACGG
GGATTTGAAGGAGGGAGGAGGGAGGGAAGGAGGGGCTAATGACACGGACA
TGATGATGGGGAAGAAGACAAAGAATAAGCACAAGGGATACATGCCGACG
GTGGTGAGTGCGAGGGAGGGAGGAAAGGGGAGCTTGGTTGATTTGGAGGC
GGGTGATGAGGTGGGAGCCGGGCGAGAGATGGTGAGAGAGGAGACGACTA
CGACTTGCTCTACGGAGGACGGCGACACAGTGCACAGTAGCAGTGACATT
TCCAGCTTGGAGGAAGAGGGGGAGGAGGAAGGAGGGGATGGGAGAATTGT
GTTGTTCGGGACGGTGGAGTATGACGGGTTGAATCCCATGTCTCCTTGGT
AGGGGGGGAGGAAGGGAGGAAACAATAGGATGTGAATGGTGTTGATAAAG
GGGGGAGACAGGGAGAATAAGGGAGGATTTGACTTGAGGAGTGAAGCGTG
GCGCGGGAAGAGACCCAAAAATTCATCACGGGGAATAGTGTGTGAGCGAG
GAACAGGGGTAGCTTTTGAGTCAGACATTAATGGAAAGGGGAAAGGATTA
CGGAAGCACAAAAATTGCGCAAAGGATAAGAAAGCGCGCTGAGTGTGTGT
GAAACAAATCACAGGCGTATGGGATCCTCATATTCTGTGACAGAGAAATT
GATAGGGTGAGGGCAAGGCGGGAGCACCCCCCAAAGAGAGATAGAATGTG
ACAAAAGAACGAAGCAATGACAGGGAAA back to topprotein sequence of NO07G04030.2 >NO07G04030.2-protein ID=NO07G04030.2-protein|Name=NO07G04030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MEASPRKRHGGAANIAGPGTSPSYMMELPITPVAVEAEEIVILSPSKGFT
TPLSKGGGSSGRRHHVPPFHSLRHKDPAIVVKRARSAQELVRAKKLLRAL
GFFYHLSLGVLFMTFTELLLNDFDNNYANTAAFLGTCAGVERGVQFFTSP
FLGNLSDSVGRRPILFMSLLLHLASLLVVAVIPTRHTVFVYFMINGGFNV
TYGMINATVADLCTAQAKTGKGELAQQYGKLGMAVGLSMILGPAIGPVLQ
KMNVLYPVYLSLLFLVISLGLAWFTPESLDDKYRAGSIDWKKASPFYALR
KSLKYRRFVFFAAPFFLSQLSEGVYHFMVLYTKVRIGWDFVALGIYISIV
GICLAVVQGNLKFIVPKIISENGSVTTGLLGHAVAMGVTSMASEGWMMGL
CIIPQVRIRFFFQNRAINFPSLLRTLCTFLSPSVPGR* back to topmRNA from alignment at chr7:1122429..1125310- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G04030.2 ID=NO07G04030.2|Name=NO07G04030.2|organism=Nannochloropsis oceanica|type=mRNA|length=2882bp|location=Sequence derived from alignment at chr7:1122429..1125310- (Nannochloropsis oceanica)
CTTTTTGGAAGCCATTACCGAACCCCTTAATCCGTGGAAACATTGGTCTA
CGGCTCATTCTCAATAACTTGTAGGACTGGACAACCATGCCAAGCTTTAA
TGCGGATTTTGCTGCTTTCTCTAATCCAAACTTTTGGCGCAGGCGTCACA
AACGTTTTTCACAAGCGCCCCCACTTCCCTCTTCGTCTGCTCTCGCTTAC
GTGCTCACATATGTAATTGACATCGCATAAGTCCTGACGAACCTTATACA
CAGTATCATCTCTCACGTGCTTCCCAATCCTTCTCATCTCACACATGTAC
ATCCACATAGCATGGAGGCAAGCCCGCGGAAGCGCCATGGTGGGGCTGCC
AACATCGCAGGGCCAGGGACTAGTCCGTCGTACATGATGGAGCTTCCGAT
CACGCCAGTAGCCGTCGAAGCAGAGGAAATTGTCATTCTCAGCCCCTCCA
AGGGCTTTACCACACCCTTGTCGAAGGGGGGGGGCAGTTCCGGCCGCCGC
CACCATGTCCCACCGTTCCATTCACTAAGGCACAAGGACCCTGCAATAGT
CGTGAAGCGTGCACGTAGCGCACAGGAATTGGTACGGGCTAAAAAGCTAT
TGCGTGCCTTGGGTTTTTTCTACCATTTGAGCTTGGGTGTACTGTTCATG
ACATTTACCGAGCTTCTTCTGAATGATTTCGACAACAATTATGCCAACAC
GGCCGCTTTCCTGGGGACGTGCGCGGGCGTGGAACGAGGAGTGCAGTTCT
TCACATCTCCGTTCCTTGGTAATCTGAGTGATAGCGTTGGTCGACGGCCC
ATCCTGTTTATGTCCCTGCTCCTGCATCTGGCCTCCCTGCTGGTCGTGGC
CGTCATCCCCACGCGTCACACAGTCTTTGTGTATTTTATGATTAATGGCG
GCTTCAACGTGACGTATGGAATGATCAACGCAACCGTCGCAGATCTATGC
ACCGCCCAGGCAAAGACAGGGAAGGGGGAGCTGGCTCAACAGTACGGAAA
ACTGGGCATGGCTGTGGGGCTTAGCATGATTCTCGGGTACGTGGATTTGG
TTGGTAAGGAGGGTAGTGGTGTTTGTGTTTTTTCTTCTGTCAAGACGCAG
CACTTTGTCTTCACATCCTGTAGCTCTGTTGACGCATACCCTCCCCTCCT
CCCTCTCCTATCCACCCATATCACACACACACACCCACAGGCCCGCTATT
GGCCCTGTCCTCCAAAAGATGAACGTGCTCTACCCCGTCTACCTCTCCCT
CCTCTTCCTGGTTATCTCCCTCGGCCTTGCGTGGTTTACGCCCGAGAGCC
TGGACGACAAATACCGAGCGGGGAGTATCGACTGGAAGAAAGCCAGCCCG
TTCTATGCCCTTCGCAAATCCCTGAAATACCGTCGCTTTGTCTTCTTCGC
CGCGCCCTTTTTTCTTTCCCAGCTGTCGGAGGGGGTGTATCACTTTATGG
TATTGTACACCAAGGTCCGGATCGGGTGGGATTTTGTGGCTTTAGGCATA
TATATCTCGATTGTTGGCATATGTCTGGCGGTGGTACAGGGAAATTTAAA
GTTTATCGTCCCCAAGATAATTAGCGAGAATGGCAGTGTGACCACGGGGT
TGCTTGGGCATGCGGTGGCGATGGGTGTCACGTCGATGGCGAGCGAGGGG
TGGATGATGGGGCTGTGCATTATACCGCAGGTGCGTATACGTTTCTTTTT
TCAAAATCGAGCCATTAACTTCCCTTCCCTCCTTCGCACTCTTTGTACCT
TCCTCTCTCCCTCTGTCCCTGGACGATAGATAGCTTCGATACTTACTGCA
TTCATAAATGCCTCTTCCCTCCCTCCCTCTCTCCCTCCTTCTCCCCCTTC
CTCCGCCAAAGATGGTTGCTTCTCTGAAAGGGCCTGGTCTAATGTCAGCG
TTGGCCACCGGGGTCTCCCCGGAGGAGCAGGGGGTGTTGCAGGGGTCTGT
ATCCAGTCTACGCGTCCTGAGCAAAGCGATAGGTGGACCGTTATTCGGTG
CCGTGATGGCCTTCTCCTTGAAGGAAGCAGGGGGGGAGGGAGGGAAGGAG
GCAGGGGCAAAAGGGGGGTGGATTCTGGGATTGCCCTTCATAGTGGCCGG
GATCTTCGATTTGGTGGCGGTAGCGATTTGCTTCGGTGTGTTTAAAGTCT
ACGGGGATTTGAAGGAGGGAGGAGGGAGGGAAGGAGGGGCTAATGACACG
GACATGATGATGGGGAAGAAGACAAAGAATAAGCACAAGGGATACATGCC
GACGGTGGTGAGTGCGAGGGAGGGAGGAAAGGGGAGCTTGGTTGATTTGG
AGGCGGGTGATGAGGTGGGAGCCGGGCGAGAGATGGTGAGAGAGGAGACG
ACTACGACTTGCTCTACGGAGGACGGCGACACAGTGCACAGTAGCAGTGA
CATTTCCAGCTTGGAGGAAGAGGGGGAGGAGGAAGGAGGGGATGGGAGAA
TTGTGTTGTTCGGGACGGTGGAGTATGACGGGTTGAATCCCATGTCTCCT
TGGTAGGGGGGGAGGAAGGGAGGAAACAATAGGATGTGAATGGTGTTGAT
AAAGGGGGGAGACAGGGAGAATAAGGGAGGATTTGACTTGAGGAGTGAAG
CGTGGCGCGGGAAGAGACCCAAAAATTCATCACGGGGAATAGTGTGTGAG
CGAGGAACAGGGGTAGCTTTTGAGTCAGACATTAATGGAAAGGGGAAAGG
ATTACGGAAGCACAAAAATTGCGCAAAGGATAAGAAAGCGCGCTGAGTGT
GTGTGAAACAAATCACAGGCGTATGGGATCCTCATATTCTGTGACAGAGA
AATTGATAGGGTGAGGGCAAGGCGGGAGCACCCCCCAAAGAGAGATAGAA
TGTGACAAAAGAACGAAGCAATGACAGGGAAA back to topCoding sequence (CDS) from alignment at chr7:1122429..1125310- >NO07G04030.2 ID=NO07G04030.2|Name=NO07G04030.2|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr7:1122429..1125310- (Nannochloropsis oceanica)
ATGGAGGCAAGCCCGCGGAAGCGCCATGGTGGGGCTGCCAACATCGCAGG
GCCAGGGACTAGTCCGTCGTACATGATGGAGCTTCCGATCACGCCAGTAG
CCGTCGAAGCAGAGGAAATTGTCATTCTCAGCCCCTCCAAGGGCTTTACC
ACACCCTTGTCGAAGGGGGGGGGCAGTTCCGGCCGCCGCCACCATGTCCC
ACCGTTCCATTCACTAAGGCACAAGGACCCTGCAATAGTCGTGAAGCGTG
CACGTAGCGCACAGGAATTGGTACGGGCTAAAAAGCTATTGCGTGCCTTG
GGTTTTTTCTACCATTTGAGCTTGGGTGTACTGTTCATGACATTTACCGA
GCTTCTTCTGAATGATTTCGACAACAATTATGCCAACACGGCCGCTTTCC
TGGGGACGTGCGCGGGCGTGGAACGAGGAGTGCAGTTCTTCACATCTCCG
TTCCTTGGTAATCTGAGTGATAGCGTTGGTCGACGGCCCATCCTGTTTAT
GTCCCTGCTCCTGCATCTGGCCTCCCTGCTGGTCGTGGCCGTCATCCCCA
CGCGTCACACAGTCTTTGTGTATTTTATGATTAATGGCGGCTTCAACGTG
ACGTATGGAATGATCAACGCAACCGTCGCAGATCTATGCACCGCCCAGGC
AAAGACAGGGAAGGGGGAGCTGGCTCAACAGTACGGAAAACTGGGCATGG
CTGTGGGGCTTAGCATGATTCTCGGGCCCGCTATTGGCCCTGTCCTCCAA
AAGATGAACGTGCTCTACCCCGTCTACCTCTCCCTCCTCTTCCTGGTTAT
CTCCCTCGGCCTTGCGTGGTTTACGCCCGAGAGCCTGGACGACAAATACC
GAGCGGGGAGTATCGACTGGAAGAAAGCCAGCCCGTTCTATGCCCTTCGC
AAATCCCTGAAATACCGTCGCTTTGTCTTCTTCGCCGCGCCCTTTTTTCT
TTCCCAGCTGTCGGAGGGGGTGTATCACTTTATGGTATTGTACACCAAGG
TCCGGATCGGGTGGGATTTTGTGGCTTTAGGCATATATATCTCGATTGTT
GGCATATGTCTGGCGGTGGTACAGGGAAATTTAAAGTTTATCGTCCCCAA
GATAATTAGCGAGAATGGCAGTGTGACCACGGGGTTGCTTGGGCATGCGG
TGGCGATGGGTGTCACGTCGATGGCGAGCGAGGGGTGGATGATGGGGCTG
TGCATTATACCGCAGGTGCGTATACGTTTCTTTTTTCAAAATCGAGCCAT
TAACTTCCCTTCCCTCCTTCGCACTCTTTGTACCTTCCTCTCTCCCTCTG
TCCCTGGACGATAG back to top
|