NO07G04000.1, NO07G04000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04000.1
Unique NameNO07G04000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr7:1113218..1114717 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1113218..1114717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G04000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04000NO07G04000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04000.1NO07G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04000.1.cds1NO07G04000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04000.1 ID=NO07G04000.1|Name=NO07G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ATGTCTAGCAGCAGCAGTACCGTAGCCTCCCTGCAAGCCAAGCTGGGCGA
AATCCAAAAAGAGCGTCAAATTCTTGAGAAGAAGCTGAGCCATGCCCGCG
GCGGCAGTGGTGGCAGTGGTGGCGGGTGGGGTCGCAGTAATCGACAAGTC
ATCCTAGATGAAGCAGGAGCAGGGGGAGGAGGAGGAGGAGGAGGAAGCCG
CAGAGGAGGAGCGAGCGACGGTACCATGTACCCCAGGCACGGGCGTCCGA
CCTCTCCTCGGCGGGACGGGGGATTGCTTTCTCGCGTGGGTGAGAAGCGG
GGAAGATTGGCCTCGGCGGTGAGTGTACCGGGAGGGGAGGAGAAGGGGGA
GATCGAGGAAGGGGAAGTGCCCGATCAGGAGGGAGGGAGGGCTCGCAAGA
CTCTGCGACGTGATGGAGAAAACGGAGGAAGGGGAGGAAGAGGGAGGGGC
CCAGCTGTGGCAACGGTGGTGGTGGATCCTGCACGACAGGCAGCGCTGAA
GGCGATGAGGGACGAGGCATACGAGGCGGCAGAATTAAGGGCAGAAGAGA
GAGGGGAAATGAAGAATATCTACCAGAAGGAAGAGGTGAAGAAGAGGGAC
AGACGGATGTTTGGGGTGTTGATGGGGCATTTGGGTGCGGCGCAGGCGAG
GCTGAAGAAGGATGGGGAGGGAAGTGGGATTCTGCGGAAGCAACGAGGGG
TGATGGAGGTGGTGGTGGGTAAGGATAGGGAGGAGGCGGAGAGGAGGAAG
GTGAAGGAGGAAGAGGAGAGGGAGAAGAGGAGGAGGGGAGAGGAGAGGAG
GAGGGAGTGGTTGGCGGTGCGACAGAAGAAGGTGGAGGGAGAGCTAGACT
GCGCGAGGTATAGGGAATATTGGGGTGCATTTAAGGGCTTTATTTTGACG
CGAGTGGAGCCCAAGTTGTTTTGGTTGCCGGCACGGATGAATGAGGCTAT
GACGGAGAAATTGGAGGAGAGTCGGAGGGAGGGGGAGGAGAAGGTAAGGA
GGAGGGAGGAGGAGAGGGCGGAAGAGGGGAGGAAGGCGGAGTTGGCTTTC
ACGGAGAAGTGGGGACCGGCGGGGAGAGGGGAGGAGGAGGAGGACGGGGG
TGGAGGAAAGGAGAGGGAGGATGCCACAGTGCTTTCTGCTGGGGTGGAAG
ACGAGTCTTCGTCAGTTGGGAATGGGGATGGGAATGGGGATGGGGGGGCA
GGGGAGGAGGGAGAGGGTTATGGTAAGGGAGAGGTTGTGGTGGAGGAAAA
GAAGAAGGGGGAAAGGGGAGAGGAGGAGAAAGATGAGATGGTGGATGAAA
AGAGGAGGAAGGAGAGGGATGAGGAGGAGGGGGAGGAGGAGGAGGAGGGG
GGGTCACCTAATGACGCTATGGTGAGGCGGTCAGGTGAAGAGGAGGAGGA
GGAAGAGCAGGAGGAGAAGAATAATGACAGCGACGAAGGCAAGAAGAAAA
ATGAAGAGACTCGTGAAAGGAGGGGGAGGAGAAGCAGCAGGAGGGAGTGA
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protein sequence of NO07G04000.1

>NO07G04000.1-protein ID=NO07G04000.1-protein|Name=NO07G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MSSSSSTVASLQAKLGEIQKERQILEKKLSHARGGSGGSGGGWGRSNRQV
ILDEAGAGGGGGGGGSRRGGASDGTMYPRHGRPTSPRRDGGLLSRVGEKR
GRLASAVSVPGGEEKGEIEEGEVPDQEGGRARKTLRRDGENGGRGGRGRG
PAVATVVVDPARQAALKAMRDEAYEAAELRAEERGEMKNIYQKEEVKKRD
RRMFGVLMGHLGAAQARLKKDGEGSGILRKQRGVMEVVVGKDREEAERRK
VKEEEEREKRRRGEERRREWLAVRQKKVEGELDCARYREYWGAFKGFILT
RVEPKLFWLPARMNEAMTEKLEESRREGEEKVRRREEERAEEGRKAELAF
TEKWGPAGRGEEEEDGGGGKEREDATVLSAGVEDESSSVGNGDGNGDGGA
GEEGEGYGKGEVVVEEKKKGERGEEEKDEMVDEKRRKERDEEEGEEEEEG
GSPNDAMVRRSGEEEEEEEQEEKNNDSDEGKKKNEETRERRGRRSSRRE*
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mRNA from alignment at chr7:1113218..1114717+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04000.1 ID=NO07G04000.1|Name=NO07G04000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at chr7:1113218..1114717+ (Nannochloropsis oceanica)
ATGTCTAGCAGCAGCAGTACCGTAGCCTCCCTGCAAGCCAAGCTGGGCGA
AATCCAAAAAGAGCGTCAAATTCTTGAGAAGAAGCTGAGCCATGCCCGCG
GCGGCAGTGGTGGCAGTGGTGGCGGGTGGGGTCGCAGTAATCGACAAGTC
ATCCTAGATGAAGCAGGAGCAGGGGGAGGAGGAGGAGGAGGAGGAAGCCG
CAGAGGAGGAGCGAGCGACGGTACCATGTACCCCAGGCACGGGCGTCCGA
CCTCTCCTCGGCGGGACGGGGGATTGCTTTCTCGCGTGGGTGAGAAGCGG
GGAAGATTGGCCTCGGCGGTGAGTGTACCGGGAGGGGAGGAGAAGGGGGA
GATCGAGGAAGGGGAAGTGCCCGATCAGGAGGGAGGGAGGGCTCGCAAGA
CTCTGCGACGTGATGGAGAAAACGGAGGAAGGGGAGGAAGAGGGAGGGGC
CCAGCTGTGGCAACGGTGGTGGTGGATCCTGCACGACAGGCAGCGCTGAA
GGCGATGAGGGACGAGGCATACGAGGCGGCAGAATTAAGGGCAGAAGAGA
GAGGGGAAATGAAGAATATCTACCAGAAGGAAGAGGTGAAGAAGAGGGAC
AGACGGATGTTTGGGGTGTTGATGGGGCATTTGGGTGCGGCGCAGGCGAG
GCTGAAGAAGGATGGGGAGGGAAGTGGGATTCTGCGGAAGCAACGAGGGG
TGATGGAGGTGGTGGTGGGTAAGGATAGGGAGGAGGCGGAGAGGAGGAAG
GTGAAGGAGGAAGAGGAGAGGGAGAAGAGGAGGAGGGGAGAGGAGAGGAG
GAGGGAGTGGTTGGCGGTGCGACAGAAGAAGGTGGAGGGAGAGCTAGACT
GCGCGAGGTATAGGGAATATTGGGGTGCATTTAAGGGCTTTATTTTGACG
CGAGTGGAGCCCAAGTTGTTTTGGTTGCCGGCACGGATGAATGAGGCTAT
GACGGAGAAATTGGAGGAGAGTCGGAGGGAGGGGGAGGAGAAGGTAAGGA
GGAGGGAGGAGGAGAGGGCGGAAGAGGGGAGGAAGGCGGAGTTGGCTTTC
ACGGAGAAGTGGGGACCGGCGGGGAGAGGGGAGGAGGAGGAGGACGGGGG
TGGAGGAAAGGAGAGGGAGGATGCCACAGTGCTTTCTGCTGGGGTGGAAG
ACGAGTCTTCGTCAGTTGGGAATGGGGATGGGAATGGGGATGGGGGGGCA
GGGGAGGAGGGAGAGGGTTATGGTAAGGGAGAGGTTGTGGTGGAGGAAAA
GAAGAAGGGGGAAAGGGGAGAGGAGGAGAAAGATGAGATGGTGGATGAAA
AGAGGAGGAAGGAGAGGGATGAGGAGGAGGGGGAGGAGGAGGAGGAGGGG
GGGTCACCTAATGACGCTATGGTGAGGCGGTCAGGTGAAGAGGAGGAGGA
GGAAGAGCAGGAGGAGAAGAATAATGACAGCGACGAAGGCAAGAAGAAAA
ATGAAGAGACTCGTGAAAGGAGGGGGAGGAGAAGCAGCAGGAGGGAGTGA
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Coding sequence (CDS) from alignment at chr7:1113218..1114717+

>NO07G04000.1 ID=NO07G04000.1|Name=NO07G04000.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr7:1113218..1114717+ (Nannochloropsis oceanica)
ATGTCTAGCAGCAGCAGTACCGTAGCCTCCCTGCAAGCCAAGCTGGGCGA
AATCCAAAAAGAGCGTCAAATTCTTGAGAAGAAGCTGAGCCATGCCCGCG
GCGGCAGTGGTGGCAGTGGTGGCGGGTGGGGTCGCAGTAATCGACAAGTC
ATCCTAGATGAAGCAGGAGCAGGGGGAGGAGGAGGAGGAGGAGGAAGCCG
CAGAGGAGGAGCGAGCGACGGTACCATGTACCCCAGGCACGGGCGTCCGA
CCTCTCCTCGGCGGGACGGGGGATTGCTTTCTCGCGTGGGTGAGAAGCGG
GGAAGATTGGCCTCGGCGGTGAGTGTACCGGGAGGGGAGGAGAAGGGGGA
GATCGAGGAAGGGGAAGTGCCCGATCAGGAGGGAGGGAGGGCTCGCAAGA
CTCTGCGACGTGATGGAGAAAACGGAGGAAGGGGAGGAAGAGGGAGGGGC
CCAGCTGTGGCAACGGTGGTGGTGGATCCTGCACGACAGGCAGCGCTGAA
GGCGATGAGGGACGAGGCATACGAGGCGGCAGAATTAAGGGCAGAAGAGA
GAGGGGAAATGAAGAATATCTACCAGAAGGAAGAGGTGAAGAAGAGGGAC
AGACGGATGTTTGGGGTGTTGATGGGGCATTTGGGTGCGGCGCAGGCGAG
GCTGAAGAAGGATGGGGAGGGAAGTGGGATTCTGCGGAAGCAACGAGGGG
TGATGGAGGTGGTGGTGGGTAAGGATAGGGAGGAGGCGGAGAGGAGGAAG
GTGAAGGAGGAAGAGGAGAGGGAGAAGAGGAGGAGGGGAGAGGAGAGGAG
GAGGGAGTGGTTGGCGGTGCGACAGAAGAAGGTGGAGGGAGAGCTAGACT
GCGCGAGGTATAGGGAATATTGGGGTGCATTTAAGGGCTTTATTTTGACG
CGAGTGGAGCCCAAGTTGTTTTGGTTGCCGGCACGGATGAATGAGGCTAT
GACGGAGAAATTGGAGGAGAGTCGGAGGGAGGGGGAGGAGAAGGTAAGGA
GGAGGGAGGAGGAGAGGGCGGAAGAGGGGAGGAAGGCGGAGTTGGCTTTC
ACGGAGAAGTGGGGACCGGCGGGGAGAGGGGAGGAGGAGGAGGACGGGGG
TGGAGGAAAGGAGAGGGAGGATGCCACAGTGCTTTCTGCTGGGGTGGAAG
ACGAGTCTTCGTCAGTTGGGAATGGGGATGGGAATGGGGATGGGGGGGCA
GGGGAGGAGGGAGAGGGTTATGGTAAGGGAGAGGTTGTGGTGGAGGAAAA
GAAGAAGGGGGAAAGGGGAGAGGAGGAGAAAGATGAGATGGTGGATGAAA
AGAGGAGGAAGGAGAGGGATGAGGAGGAGGGGGAGGAGGAGGAGGAGGGG
GGGTCACCTAATGACGCTATGGTGAGGCGGTCAGGTGAAGAGGAGGAGGA
GGAAGAGCAGGAGGAGAAGAATAATGACAGCGACGAAGGCAAGAAGAAAA
ATGAAGAGACTCGTGAAAGGAGGGGGAGGAGAAGCAGCAGGAGGGAGTGA
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Synonyms
Publications