NO07G03860.1, NO07G03860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03860.1
Unique NameNO07G03860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1726
Alignment locationchr7:1078836..1081144 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1078836..1081144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03860.1 vs.
Match: EWM26988.1 (brain protein 44-like protein [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 7.100e-47
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEAK 102
            MSARL+QFINSPTGPKTTHFWGPVANWGFVLAA+IDSRKPPETISAKMTGVLSVYS++FMRFAWMVQPRNYLLLACHASNE AQLYQLSRRI YD+ Q+ K
Sbjct:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGK 101
The following BLAST results are available for this feature:
BLAST of NO07G03860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26988.17.100e-4790.10brain protein 44-like protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03860NO07G03860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03860.1NO07G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03860.1.cds1NO07G03860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03860.1.cds2NO07G03860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03860.1.cds3NO07G03860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03860.1.cds4NO07G03860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03860.1 ID=NO07G03860.1|Name=NO07G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp
ACGTTGTTATTTACTTCGGTCTTTGATTTCTACATACACAAGCTTGCTTG
CTCGTGTCTCGCAGTACCGTCCTTTCAACGGACTGCTCACCATCCCTCCC
TCCCTCCCTCCCTCTCGCTTTCTCTCCCTCTCTCCCTCCCTCTTCGCCTC
CCCTACTCCCCATCGCTTTCAGACAGACCCAATCCTTCATCCACCTCAAA
CTCCGTCCCTGCATCATCTTCTCCCTCCACCGTGGCCTCCTCCATCTCCT
CCATCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCC
TCCTCCTCCTCCTCCTCCTCCCGCCTGGTCACCACCCCTATGGGCGTGGG
AGCAACAATGGTCTGAATTTCAACCAGCTTATCCTCCAGCTGTCGTTCCA
TGTGCGCAAGCATTTCCAGCTCTCCGTGCTCCAACCTCGGGAACCAGGCT
TCATATCGACGGGGGAGGGAAACGAGGGAAGGGAGGGGAAAGAGATGAAT
GCTGGACCGCGTTATTTTCCGCCTACAAACTCGGTGACATGAGGCAAACT
TACGCACGACGAGACTTTGAGGGGCGAGTTAGAGGGATCTACCACGCTAT
AACACTTACCCTCCTCGGTGTCGCGGGGCTCCAAAAGTGGAAAGGGAAAG
GGGATGGCGTTCATGGCTTGTGCTTAGCGTCCGAGTGTCCTCGCGGGTCA
AAATTCTCCTCCCCCTCCTTCTCTTTTTTTGGGGTAAGCGGAGGTGGTCT
GCGCGGTTTGCACGGTAGGGATTGTGTGTTGAGAGTGAAGCGCGGTACTG
TGGACTTGGCGATGATGGGAGCGAGCTGAAGGCTTGTGCCGAGCGAGGGT
GGAAAGGCCAGCCTCTACCCAGACACACTTCCCATCCCCCCTCCACCATC
TCTACGAGCAGGCACAATAACAGTGCTGTCTCTGTGTTTTGCCAATATAG
CAGTGGTAAGGGTGTCACCCCAGCCAAAATGAGAGCAAGAGAGAGAGGTG
AAGAAAGAAGCATGTCGGTCATAATCACAGGCCTCATAGCCCCTCATCTC
CCCACCACATCCAAACCCTCGCATGACCTACCCAAGACCACCACCCTATA
TCCTGCGTTCCGCAAGCACAGGCCGCTTTTTAATCCACCAGCCGGCTGCC
TGCTCCATCCCTTGCTCGTCGTTGCTGATTGCTTGCTCCTCTCCCTCCTA
GCTACACACGTCTAATTCATGTCGGCGCGACTTATGCAGTTTATCAACAG
CCCCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAATTGGG
GGTTTGTGTTGGCGGCAATCATCGACTCGCGGAAGCCACCGGAGACTATT
TCTGCCAAGATGACGGGTGTCCTCTCCGTTTATAGCATGATGTTTATGCG
TTTTGCCTGGATGGTACAGCCACGAAACTACCTCTTGTTGGCGTGCCATG
CCTCCAATGAATGCGCGCAGCTTTATCAGCTGTCGCGGAGAATCAAATAT
GACCTGAGTCAGGAGGCAAAGTGATAATTGGACGACGAATCATCTCACAG
CACCGGCTACGATTGCTCTAGATACGGATTTCTTAGTATGGGGGGAGGGA
GAAAGGTTAGGGTGTGACGAGGTGCACAAGAGACGAGCGGAGAAAGTAGA
CTGGAGGAAAGAAAAAAGTTGAAGGGTGAGGGGGAAAAAAAACGACGGCA
CTCGGTAGTATGTCGTTTTAAACGCC
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protein sequence of NO07G03860.1

>NO07G03860.1-protein ID=NO07G03860.1-protein|Name=NO07G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTG
VLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA
K*
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mRNA from alignment at chr7:1078836..1081144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03860.1 ID=NO07G03860.1|Name=NO07G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2309bp|location=Sequence derived from alignment at chr7:1078836..1081144- (Nannochloropsis oceanica)
ACGTTGTTATTTACTTCGGTCTTTGATTTCTACATACACAAGCTTGCTTG
CTCGTGTCTCGCAGTACCGTCCTTTCAACGGACTGCTCACCATCCCTCCC
TCCCTCCCTCCCTCTCGCTTTCTCTCCCTCTCTCCCTCCCTCTTCGCCTC
CCCTACTCCCCATCGCTTTCAGACAGACCCAATCCTTCATCCACCTCAAA
CTCCGTCCCTGCATCATCTTCTCCCTCCACCGTGGCCTCCTCCATCTCCT
CCATCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCC
TCCTCCTCCTCCTCCTCCTCCCGCCTGGTCACCACCCCTATGGGCGTGGG
AGCAACAATGGTCTGAATTTCAACCAGCTTATCCTCCAGCTGTCGTTCCA
TGTGCGCAAGCATTTCCAGCTCTCCGTGCTCCAACCTCGGGAACCAGGCT
TCATATCGACGGGGGAGGGAAACGAGGGAAGGGAGGGGAAAGAGATGAAT
GCTGGACCGCGTTATTTTCCGCCTACAAACTCGGTGACATGAGGCAAACT
TACGCACGACGAGACTTTGAGGGGCGAGTTAGAGGGATCTACCACGCTAT
AACACTTACCCTCCTCGGTGTCGCGGGGCTCCAAAAGTGGAAAGGGAAAG
GGGATGGCGTTCATGGCTTGTGCTTAGCGTCCGAGTGTCCTCGCGGGTCA
AAATTCTCCTCCCCCTCCTTCTCTTTTTTTGGGGTAAGCGGAGGTGGTCT
GCGCGGTTTGCACGGTAGGGATTGTGTGTTGAGAGTGAAGCGCGGTACTG
TGGACTTGGCGATGATGGGAGCGAGCTGAAGGCTTGTGCCGAGCGAGGGT
GGAAAGGCCAGCCTCTACCCAGACACACTTCCCATCCCCCCTCCACCATC
TCTACGAGCAGGCACAATAACAGTGCTGTCTCTGTGTTTTGCCAATATAG
CAGTGGTAAGGGTGTCACCCCAGCCAAAATGAGAGCAAGAGAGAGAGGTG
AAGAAAGAAGCATGTCGGTCATAATCACAGGCCTCATAGCCCCTCATCTC
CCCACCACATCCAAACCCTCGCATGACCTACCCAAGACCACCACCCTATA
TCCTGCGTTCCGCAAGCACAGGCCGCTTTTTAATCCACCAGCCGGCTGCC
TGCTCCATCCCTTGCTCGTCGTTGCTGATTGCTTGCTCCTCTCCCTCCTA
GCTACACACGTCTAATTCATGTCGGCGCGACTTATGCAGTTTATCAACAG
CCCCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAATTGGG
GGTTTGTGTTGGCGGTATGTGATGGCAGCGGGTGGGAGGAGAGGGAGGGA
AGGAAGGCGGGGAAAGTGGAGGAGGGAGGGTGGTAGGAAGAGGAGGTAGG
GCGTCTATTCATGCGCTGTCCACACTAATACAGGCAATCATCGACTCGCG
GAAGCCACCGGAGACTATTTCTGCCAAGATGACGGGTGGTACGTACCTCC
GCAAGCTGGGCCGTGTTGATTTTTCTCCCTCTTTTTGGGGAGTATTAATT
TTGTTCTTTTTTTTGGGTGGGTGTGGGGGGGCAGAATCCGTTCCTTCACT
TCCATCAACCTCGCTCGCTCGCTCTTTCCTCTCCCTCTCTGTCATTCCTC
TTTGTGCATGGACTGTTTGGAGCGTATGCGTTGTTTATCGAGCTAGCCTC
CCGCTGTTAACGACCCTTGTGGCAATCCTGCCTTCAGCCCCCTCTAACGA
TCTCATTCACTCCTTCCTCCCTCCTCTTTTTCCTCCCTCAGTCCTCTCCG
TTTATAGCATGATGTTTATGCGTTTTGCCTGGATGGTACAGCCACGAAAC
TACCTCTTGTTGGCGTGCCATGCCTCCAATGAATGCGCGCAGCTTTATCA
GCTGTCGCGGAGAATCAAATATGAGTAAGTGGGGAAGGGTGGAGGATCGG
AGAAAGGGAGGCAAGGAGAAAGGTCGGGAGAAAGGGCGACTTTGAAGATG
AAGACGTGACTTGTGTTATTACGCTCCTATACTCGCAACCGACCTCAAGC
ATTCCTTGACCCACACACACACACACCCCACACAGCCTGAGTCAGGAGGC
AAAGTGATAATTGGACGACGAATCATCTCACAGCACCGGCTACGATTGCT
CTAGATACGGATTTCTTAGTATGGGGGGAGGGAGAAAGGTTAGGGTGTGA
CGAGGTGCACAAGAGACGAGCGGAGAAAGTAGACTGGAGGAAAGAAAAAA
GTTGAAGGGTGAGGGGGAAAAAAAACGACGGCACTCGGTAGTATGTCGTT
TTAAACGCC
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Coding sequence (CDS) from alignment at chr7:1078836..1081144-

>NO07G03860.1 ID=NO07G03860.1|Name=NO07G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr7:1078836..1081144- (Nannochloropsis oceanica)
ATGTCGGCGCGACTTATGCAGTTTATCAACAGCCCCACAGGCCCCAAGAC
AACTCATTTCTGGGGGCCTGTGGCCAATTGGGGGTTTGTGTTGGCGGCAA
TCATCGACTCGCGGAAGCCACCGGAGACTATTTCTGCCAAGATGACGGGT
GTCCTCTCCGTTTATAGCATGATGTTTATGCGTTTTGCCTGGATGGTACA
GCCACGAAACTACCTCTTGTTGGCGTGCCATGCCTCCAATGAATGCGCGC
AGCTTTATCAGCTGTCGCGGAGAATCAAATATGACCTGAGTCAGGAGGCA
AAGTGA
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Synonyms
Publications