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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1032119..1034495 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03710.3 vs.
Match: EWM27011.1 (rab gtpase [Nannochloropsis gaditana]) HSP 1 Score: 187.2 bits (474), Expect = 9.200e-44 Identity = 139/321 (43.30%), Postives = 171/321 (53.27%), Query Frame = 0
Query: 1 MADPPEAAPAATTTPPRRRGPSV-LETANSSWSVSALRYHHENMGPIVPTVGGFALVKLGEAGGSPFKGKAGVGLGLSPVRSSDSTPYAPGAGNLLLVSENYS-------GGHSADGTQTTAAAAGGCATCHPVTSSPSSSP--ARRAHVTIIRSVDEDEEEKYGDEETMEGEGGRLGDGSQEGRAAAASVPGSARTSRSSSSGTAPLCCRNCGSTEVVKKNSSLGSASLDSLKAAAVLSGVPLSTCKLLVVGNAKCGKTSVIRRFVQGNFQNAYISTVGADYLKRDVVLRDGRPVRLQLWDIAGQDRFVHLTRAYFRRGK 312
MAD P + + R PS L T SWS S H ++ P+VPT GGFA +KLG + G + PV S+ LL ++ + G H+ + C P S ++ + II SVD DE+ Y EET E G G E S+ TS + + +C ST+ +N L S SL SL++AA+ SGVP+S CKLLVVGNAKCGKTSVIRRFVQGNF+NAY+STVGADYLKRDV+L+DGRPVRLQLWDIAGQDRFVHLTR YF R K
Sbjct: 1 MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEA-----NRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDED--YEVEETKEECGTFYGGNFTES--------SSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAK 306
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03710.3 ID=NO07G03710.3|Name=NO07G03710.3|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp AAGACCTTGGTTGGGCAGACCTAATCCTCTCCCAAATGCTCACAAGCAAG GCAATTCATTTCCATTGTCAACCATCCTGGAAAAAATGCAAGCACAGGCC TGTGTCTCGCCTTTGTCCTTCACTGCGACCAGCGTCTCCACCAAGCAAGC AACACTATCATCAACATCATGGCAGATCCCCCTGAGGCTGCTCCTGCCGC AACGACGACACCGCCACGCCGCCGAGGCCCCTCCGTCCTCGAGACTGCCA ACTCGTCTTGGAGTGTCAGTGCCCTGCGTTACCATCACGAAAACATGGGA CCTATTGTGCCCACGGTCGGAGGGTTTGCCTTAGTCAAGCTAGGTGAGGC GGGAGGGTCTCCCTTTAAAGGGAAGGCAGGTGTAGGCTTAGGCCTCTCTC CTGTCAGGTCCAGCGACAGCACGCCATACGCACCGGGAGCTGGGAATTTG CTGTTGGTCTCGGAGAATTATAGTGGCGGCCATAGTGCTGATGGTACCCA AACGACCGCGGCGGCTGCTGGTGGGTGTGCGACATGTCATCCGGTCACTA GCAGCCCGAGCTCAAGTCCCGCGAGAAGGGCCCATGTGACCATCATTCGC AGCGTGGATGAGGACGAGGAAGAGAAATATGGTGATGAGGAAACGATGGA AGGAGAAGGAGGGCGTTTGGGGGACGGCAGTCAGGAAGGCAGGGCGGCAG CGGCGTCTGTTCCTGGGTCAGCAAGGACCAGCAGGAGCAGTAGCAGCGGT ACAGCACCCTTGTGCTGCCGAAATTGTGGCTCAACAGAAGTGGTGAAGAA GAATTCCTCGCTAGGTTCTGCCTCCCTCGACTCCCTCAAAGCAGCCGCCG TCCTAAGCGGGGTCCCCCTGTCCACATGCAAGCTGCTGGTGGTCGGCAAT GCTAAATGCGGGAAGACCAGTGTCATTCGCCGATTCGTACAGGGTAACTT CCAAAATGCTTATATCTCTACTGTCGGTGCCGATTACCTGAAGCGAGACG TGGTTCTACGAGACGGGCGGCCCGTTAGGTTACAGCTGTGGGATATTGCT GGACAAGACCGTTTTGTTCACTTGACGCGAGCTTACTTTAGACGAGGTAA GGAAGAGTGGGATGGAGAGGTGGAAGGAGGGGAGGATGACCATCACGGGA TATGGCGGCAACTCATGCTCGCTTTTTCGCCAATTCTTACTTCGCTGATG ATTCACTCGTCTTTCCTCCCTCCCTGGCTCACTCCCTCGCGCCTCAAGCC AAGGGCGTTCTTGTTGTCTGTGATCTAACCCGTGAGAACACGTTCGAGGC GGTGAAGGCATGGAAGAAGGAAATCGACGAATGGGCTCGGTTAGAAGGGA GGGAAGCCGGCATTCCCGTGGTGTTGATCGCAAATAAGGTATGTGGGATT ATCTTGGAGGCTTTGGGGTCGGGGTGGGTTGCGAAAGTTGAAAAAGATGG GTGGCGAACGTTGGGAGGGTGTGTAAATGCTCTTCCGTTCTAGCTTGCTT GTCATGACTTTATTGGGTTTCTTCCTGACCTATGCCGAATAATATTCCGT TGAGAAAAGTGATCTAGCACCATCTGTCTTCATGGAGTATCCTTCCTTTC ACCCTTCCTCTTTGCCACCTCATCACTACTACTAGTGCGACATGCTCACG GATGCCACGGACTCTTTTCTCGCTGGGGCTAACATGGTTGCCATGTGCCA CGAACAGAAGTTTGCGTCGTGGTACGTGACGTCGGCCAAATCAGGGAATA ATGTGGATGACGCATTCTTCGACCTGGTGGAGCGGGCGATGGAAGTGAAG GAAGAAAAGGAAATGCCCTCGGGAGGAGAGAAGGAAGGGGGAGGTGGAAA AGGGGAGGGAGGGTTCAAATTGTCGGCGGTGGATGGGATGGAGGAGAGGG GAGTAAGAGGTGGAGGAGGAGCATTTGGATGGTCCATGTGCTAGTTTTAT GTTCTATTGAGCGGGTTTTGGGGGGTCGGAAGAAACAAGTGACAGCATCT TGTACAATAAAAA back to topprotein sequence of NO07G03710.3 >NO07G03710.3-protein ID=NO07G03710.3-protein|Name=NO07G03710.3|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MADPPEAAPAATTTPPRRRGPSVLETANSSWSVSALRYHHENMGPIVPTV GGFALVKLGEAGGSPFKGKAGVGLGLSPVRSSDSTPYAPGAGNLLLVSEN YSGGHSADGTQTTAAAAGGCATCHPVTSSPSSSPARRAHVTIIRSVDEDE EEKYGDEETMEGEGGRLGDGSQEGRAAAASVPGSARTSRSSSSGTAPLCC RNCGSTEVVKKNSSLGSASLDSLKAAAVLSGVPLSTCKLLVVGNAKCGKT SVIRRFVQGNFQNAYISTVGADYLKRDVVLRDGRPVRLQLWDIAGQDRFV HLTRAYFRRGKEEWDGEVEGGEDDHHGIWRQLMLAFSPILTSLMIHSSFL PPWLTPSRLKPRAFLLSVI* back to topmRNA from alignment at chr7:1032119..1034495+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03710.3 ID=NO07G03710.3|Name=NO07G03710.3|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp|location=Sequence derived from alignment at chr7:1032119..1034495+ (Nannochloropsis oceanica) AAGACCTTGGTTGGGCAGACCTAATCCTCTCCCAAATGCTCACAAGCAAG
GCAATTCATTTCCATTGTCAACCATCCTGGAAAAAATGCAAGCACAGGCC
TGTGTCTCGCCTTTGTCCTTCACTGCGACCAGCGTCTCCACCAAGCAAGC
AACACTATCATCAACATCATGGCAGATCCCCCTGAGGCTGCTCCTGCCGC
AACGACGACACCGCCACGCCGCCGAGGCCCCTCCGTCCTCGAGACTGCCA
ACTCGTCTTGGAGTGTCAGTGCCCTGCGTTACCATCACGAAAACATGGGA
CCTATTGTGCCCACGGTCGGAGGGTTTGCCTTAGTCAAGCTAGGTGAGGC
GGGAGGGTCTCCCTTTAAAGGGAAGGCAGGTGTAGGCTTAGGCCTCTCTC
CTGTCAGGTCCAGCGACAGCACGCCATACGCACCGGGAGCTGGGAATTTG
CTGTTGGTCTCGGAGAATTATAGTGGCGGCCATAGTGCTGATGGTACCCA
AACGACCGCGGCGGCTGCTGGTGGGTGTGCGACATGTCATCCGGTCACTA
GCAGCCCGAGCTCAAGTCCCGCGAGAAGGGCCCATGTGACCATCATTCGC
AGCGTGGATGAGGACGAGGAAGAGAAATATGGTGATGAGGAAACGATGGA
AGGAGAAGGAGGGCGTTTGGGGGACGGCAGTCAGGAAGGCAGGGCGGCAG
CGGCGTCTGTTCCTGGGTCAGCAAGGACCAGCAGGAGCAGTAGCAGCGGT
ACAGCACCCTTGTGCTGCCGAAATTGTGGCTCAACAGAAGTGGTGAAGAA
GGCAAGTCGTTTCAAAAGGGACAATCAAGAGTGTCTTGTCGTTTATTTTG
TTTATTTTGTTTCTCTATGAGGTGATATAAGAGGCGAAAATCATCCAAAA
CGCTTTTGCCTACAGAGGTCCCAAGACCTGTCACCAAGAAGTATATGCCC
ATGCTCACCCATATATGTCCACGCTCACCTGCCCCTTTTACCTCATCTAC
CACCCTCCAATACTTTTTGACAGAATTCCTCGCTAGGTTCTGCCTCCCTC
GACTCCCTCAAAGCAGCCGCCGTCCTAAGCGGGGTCCCCCTGTCCACATG
CAAGCTGCTGGTGGTCGGCAATGCTAAATGCGGGAAGACCAGTGTCATTC
GCCGATTCGTACAGGGTAACTTCCAAAATGTACGTAAGGGGGCATATTTA
TCGTAAATGAATTTTAATTCGGCAAAAACTCGACGTGCGTCTGTCCCTTT
GAGACGCATTCTTCCACTCAATCATTCGTGTGCGTGACCGCCAAACAACA
ACACAACCAATCAATGCACAGGCTTATATCTCTACTGTCGGTGCCGATTA
CCTGAAGCGAGACGTGGTTCTACGAGACGGGCGGCCCGTTAGGTTACAGC
TGTGGGATATTGCTGGACAAGACCGTTTTGTTCACTTGACGCGAGCTTAC
TTTAGACGAGGTAAGGAAGAGTGGGATGGAGAGGTGGAAGGAGGGGAGGA
TGACCATCACGGGATATGGCGGCAACTCATGCTCGCTTTTTCGCCAATTC
TTACTTCGCTGATGATTCACTCGTCTTTCCTCCCTCCCTGGCTCACTCCC
TCGCGCCTCAAGCCAAGGGCGTTCTTGTTGTCTGTGATCTAACCCGTGAG
AACACGTTCGAGGCGGTGAAGGCATGGAAGAAGGAAATCGACGAATGGGC
TCGGTTAGAAGGGAGGGAAGCCGGCATTCCCGTGGTGTTGATCGCAAATA
AGGTATGTGGGATTATCTTGGAGGCTTTGGGGTCGGGGTGGGTTGCGAAA
GTTGAAAAAGATGGGTGGCGAACGTTGGGAGGGTGTGTAAATGCTCTTCC
GTTCTAGCTTGCTTGTCATGACTTTATTGGGTTTCTTCCTGACCTATGCC
GAATAATATTCCGTTGAGAAAAGTGATCTAGCACCATCTGTCTTCATGGA
GTATCCTTCCTTTCACCCTTCCTCTTTGCCACCTCATCACTACTACTAGT
GCGACATGCTCACGGATGCCACGGACTCTTTTCTCGCTGGGGCTAACATG
GTTGCCATGTGCCACGAACAGAAGTTTGCGTCGTGGTACGTGACGTCGGC
CAAATCAGGGAATAATGTGGATGACGCATTCTTCGACCTGGTGGAGCGGG
CGATGGAAGTGAAGGAAGAAAAGGAAATGCCCTCGGGAGGAGAGAAGGAA
GGGGGAGGTGGAAAAGGGGAGGGAGGGTTCAAATTGTCGGCGGTGGATGG
GATGGAGGAGAGGGGAGTAAGAGGTGGAGGAGGAGCATTTGGATGGTCCA
TGTGCTAGTTTTATGTTCTATTGAGCGGGTTTTGGGGGGTCGGAAGAAAC
AAGTGACAGCATCTTGTACAATAAAAA back to topCoding sequence (CDS) from alignment at chr7:1032119..1034495+ >NO07G03710.3 ID=NO07G03710.3|Name=NO07G03710.3|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr7:1032119..1034495+ (Nannochloropsis oceanica) ATGGCAGATCCCCCTGAGGCTGCTCCTGCCGCAACGACGACACCGCCACG CCGCCGAGGCCCCTCCGTCCTCGAGACTGCCAACTCGTCTTGGAGTGTCA GTGCCCTGCGTTACCATCACGAAAACATGGGACCTATTGTGCCCACGGTC GGAGGGTTTGCCTTAGTCAAGCTAGGTGAGGCGGGAGGGTCTCCCTTTAA AGGGAAGGCAGGTGTAGGCTTAGGCCTCTCTCCTGTCAGGTCCAGCGACA GCACGCCATACGCACCGGGAGCTGGGAATTTGCTGTTGGTCTCGGAGAAT TATAGTGGCGGCCATAGTGCTGATGGTACCCAAACGACCGCGGCGGCTGC TGGTGGGTGTGCGACATGTCATCCGGTCACTAGCAGCCCGAGCTCAAGTC CCGCGAGAAGGGCCCATGTGACCATCATTCGCAGCGTGGATGAGGACGAG GAAGAGAAATATGGTGATGAGGAAACGATGGAAGGAGAAGGAGGGCGTTT GGGGGACGGCAGTCAGGAAGGCAGGGCGGCAGCGGCGTCTGTTCCTGGGT CAGCAAGGACCAGCAGGAGCAGTAGCAGCGGTACAGCACCCTTGTGCTGC CGAAATTGTGGCTCAACAGAAGTGGTGAAGAAGAATTCCTCGCTAGGTTC TGCCTCCCTCGACTCCCTCAAAGCAGCCGCCGTCCTAAGCGGGGTCCCCC TGTCCACATGCAAGCTGCTGGTGGTCGGCAATGCTAAATGCGGGAAGACC AGTGTCATTCGCCGATTCGTACAGGGTAACTTCCAAAATGCTTATATCTC TACTGTCGGTGCCGATTACCTGAAGCGAGACGTGGTTCTACGAGACGGGC GGCCCGTTAGGTTACAGCTGTGGGATATTGCTGGACAAGACCGTTTTGTT CACTTGACGCGAGCTTACTTTAGACGAGGTAAGGAAGAGTGGGATGGAGA GGTGGAAGGAGGGGAGGATGACCATCACGGGATATGGCGGCAACTCATGC TCGCTTTTTCGCCAATTCTTACTTCGCTGATGATTCACTCGTCTTTCCTC CCTCCCTGGCTCACTCCCTCGCGCCTCAAGCCAAGGGCGTTCTTGTTGTC TGTGATCTAA back to top
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