NO07G03660.1, NO07G03660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03660.1
Unique NameNO07G03660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr7:1018227..1019372 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1018227..1019372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03660.1 vs.
Match: EWM27007.1 (zinc finger mynd domain-containing protein 19 [Nannochloropsis gaditana])

HSP 1 Score: 353.2 bits (905), Expect = 1.000e-93
Identity = 201/402 (50.00%), Postives = 256/402 (63.68%), Query Frame = 0 
Query:   16 SPSSSAVLTPSPLPASSLESELARGLKLTEELTS-------STSTSTTESACKTSNRSNIQ------PNKQGITVLFEVDLQYAPLAEDADASATKRKCHLPSCPVTDGSSSTPLASCAQCKTVRYCGRVHQTQDWKLGHKHECAQWKTLRAMAVAAEVLASAELKGGADE--EEAGLNESKSNNTSTPSTSTASVESKAIYDEDIASPPSTDTSSFPAATR---------------ATASTFPLPL------NFDRQDIACKLLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWADRTSVKLELD 382
            SP S+         +SSLE+ELARGL+LT ELTS       STS+S    +  ++N S +       PNK GI++LF+ DLQYAP +E  +  +T +KCHLP+C   +  +S  L+ CAQCK  RYCGR HQ  DWK GHKHECAQWKTL AM  ++           ADE    AG N++ ++    P+     VE+ ++   +     ST+ S    +TR               + A+  P P+        D++D+A KLLCK+RLHLGPYT+AHYD+QGRGF F+QSTATA +L ++RPI   G P++R VL+H+LTWGEF+SVVLEDDFEYTVAR PLQ ALA YDPE EYV ++KLRCGFL V RVPLVP A ACR+LAEDY WA+R SV LELD
Sbjct:    4 SPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSR---------EADEPLPTAGGNKTNASKAQIPT----EVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392
The following BLAST results are available for this feature:
BLAST of NO07G03660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27007.11.000e-9350.00zinc finger mynd domain-containing protein 19 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03660NO07G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03660.1NO07G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03660.1.cds1NO07G03660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03660.1 ID=NO07G03660.1|Name=NO07G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
ATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTTGTCACC
TTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCTCCCTCG
AATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACGTCGTCC
ACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAGATCCAA
CATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTGATCTGC
AATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAGCGCAAA
TGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCACCCCGCT
TGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAGTGCATC
AAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAATGGAAG
ACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGCCGAGTT
AAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCAAGAGCA
ATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCAAAAGCT
ATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAGCTCCTT
TCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTCTGAACT
TCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGTCTCCAC
CTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGGGTTTGC
TTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCCGCCCCA
TCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCACTTCTTG
ACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGAGTACAC
TGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACCCGGAAG
ATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCCGTGATG
CGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGCGGAGGA
CTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATTAA
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protein sequence of NO07G03660.1

>NO07G03660.1-protein ID=NO07G03660.1-protein|Name=NO07G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MPTGTKKKSEASNSLSPSSSAVLTPSPLPASSLESELARGLKLTEELTSS
TSTSTTESACKTSNRSNIQPNKQGITVLFEVDLQYAPLAEDADASATKRK
CHLPSCPVTDGSSSTPLASCAQCKTVRYCGRVHQTQDWKLGHKHECAQWK
TLRAMAVAAEVLASAELKGGADEEEAGLNESKSNNTSTPSTSTASVESKA
IYDEDIASPPSTDTSSFPAATRATASTFPLPLNFDRQDIACKLLCKIRLH
LGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFL
TWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVM
RVPLVPDARACRKLAEDYQWADRTSVKLELD*
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mRNA from alignment at chr7:1018227..1019372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03660.1 ID=NO07G03660.1|Name=NO07G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at chr7:1018227..1019372+ (Nannochloropsis oceanica)
ATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTTGTCACC
TTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCTCCCTCG
AATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACGTCGTCC
ACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAGATCCAA
CATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTGATCTGC
AATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAGCGCAAA
TGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCACCCCGCT
TGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAGTGCATC
AAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAATGGAAG
ACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGCCGAGTT
AAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCAAGAGCA
ATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCAAAAGCT
ATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAGCTCCTT
TCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTCTGAACT
TCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGTCTCCAC
CTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGGGTTTGC
TTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCCGCCCCA
TCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCACTTCTTG
ACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGAGTACAC
TGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACCCGGAAG
ATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCCGTGATG
CGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGCGGAGGA
CTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATTAA
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Coding sequence (CDS) from alignment at chr7:1018227..1019372+

>NO07G03660.1 ID=NO07G03660.1|Name=NO07G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr7:1018227..1019372+ (Nannochloropsis oceanica)
ATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTTGTCACC
TTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCTCCCTCG
AATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACGTCGTCC
ACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAGATCCAA
CATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTGATCTGC
AATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAGCGCAAA
TGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCACCCCGCT
TGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAGTGCATC
AAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAATGGAAG
ACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGCCGAGTT
AAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCAAGAGCA
ATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCAAAAGCT
ATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAGCTCCTT
TCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTCTGAACT
TCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGTCTCCAC
CTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGGGTTTGC
TTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCCGCCCCA
TCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCACTTCTTG
ACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGAGTACAC
TGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACCCGGAAG
ATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCCGTGATG
CGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGCGGAGGA
CTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATTAA
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Synonyms
Publications