NO07G03360.1, NO07G03360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03360.1
Unique NameNO07G03360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length941
Alignment locationchr7:924794..925940 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:924794..925940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03360.1 vs.
Match: EWM27037.1 (peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana])

HSP 1 Score: 335.5 bits (859), Expect = 1.500e-88
Identity = 177/262 (67.56%), Postives = 201/262 (76.72%), Query Frame = 0 
Query:    6 QPGLFLLVLLGTSLVVQGFLPPTSVPTRETTKLTALRATPASTPEHDDRRSWFQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVL 268
            Q  L + +LL  SLV+QGFL     P +      +L A PA     DDRR  F++ A ++L L+   T    S   +  +DQ  V DPI+PN+TEPA TS CFLEFASE T FGR+EVSLYGKVCP+TAANFEALCR+GYKGSNVYRVLKDFSIQMGDIGSKKRG  GRSS +GG P  KET++VQHSLEGMLSMVND+ G VDSRFFIN+GKDGSWADGRYVAFGRVT+GLEVLKE+EKVEVKPPSNVP  PIKI  AGVL
Sbjct:   45 QSCLCITMLLMASLVIQGFLGTVQGPRQRRD--ISLSAAPAR--RGDDRRHVFKKAATTVLLLT---TAASTSPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299
The following BLAST results are available for this feature:
BLAST of NO07G03360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27037.11.500e-8867.56peptidyl-prolyl cis-trans isomerase b precursor [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03360NO07G03360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03360.1NO07G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03360.1.cds1NO07G03360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03360.1.cds2NO07G03360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03360.1 ID=NO07G03360.1|Name=NO07G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=941bp
AAACCACAGCCATGCCATCAATTCCACAACCTGGCCTCTTCCTCCTCGTG
CTCTTGGGGACCAGTCTCGTCGTCCAGGGTTTTCTGCCGCCCACAAGTGT
GCCAACAAGAGAGACCACCAAGCTCACCGCCCTGCGTGCCACCCCGGCGT
CGACACCTGAACATGATGACCGCCGTTCCTGGTTTCAACAGGTGGCGGTG
TCAATGTTAGCCCTGTCCGCCACCAACACATTTCTTCGTCCGTCTTCTGC
CAGTGCGACCCGCTTTGACCAAGAAACGGTGCTCGACCCTATCTATCCCA
ACGTCACGGAGCCCGCCTTCACGTCTACCTGTTTCCTGGAATTTGCCTCG
GAGAACACCAAGTTTGGGAGAGTAGAGGTGTCACTTTATGGGAAAGTATG
TCCCAAAACAGCAGCTAATTTTGAGGCCTTGTGTCGGGAGGGGTACAAGG
GGAGCAATGTCTATCGGGTGCTCAAAGATTTCTCAATTCAAATGGGCGAT
ATTGGAAGTAAGAAACGAGGGGTCATGGGTCGGTCTAGTTTTGAGGGAGG
GGCGCCTTTCGCGAAAGAAACGATGCAGGTGCAGCATTCATTGGAAGGGA
TGCTCTCAATGGTGAATGACAGAGAAGGTAAAGTGGACTCGAGATTTTTC
ATCAACCTTGGGAAGGACGGTTCGTGGGCGGACGGACGGTATGTGGCGTT
TGGAAGGGTGACGAGGGGTTTGGAAGTCTTGAAGGAGCTGGAAAAGGTGG
AGGTGAAGCCACCCAGTAACGTCCCGGCGACTCCGATAAAGATTGTGGAG
GCCGGCGTGCTGGAGACCCGGACGAGGTAGATTAGAAATTCAAGGAGGTA
AGATCGACACTTAATTCGTCGTCAACTAGTCAGGAATCGGCGACGAAAAA
GAGTAAAATGAAAGGAAGAGACCCAAGCAGCCAGAATTCAA
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protein sequence of NO07G03360.1

>NO07G03360.1-protein ID=NO07G03360.1-protein|Name=NO07G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPSIPQPGLFLLVLLGTSLVVQGFLPPTSVPTRETTKLTALRATPASTPE
HDDRRSWFQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTE
PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNV
YRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSM
VNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKP
PSNVPATPIKIVEAGVLETRTR*
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mRNA from alignment at chr7:924794..925940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03360.1 ID=NO07G03360.1|Name=NO07G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp|location=Sequence derived from alignment at chr7:924794..925940- (Nannochloropsis oceanica)
AAACCACAGCCATGCCATCAATTCCACAACCTGGCCTCTTCCTCCTCGTG
CTCTTGGGGACCAGTCTCGTCGTCCAGGGTTTTCTGCCGCCCACAAGTGT
GCCAACAAGAGAGGTAAGCAGTTAGGCGGGGTTGGACCTCAGAGTGCAAC
CCTTTCACCTGTCCATCAGAATGGGGGGTGCGCTGCACGACATGCATTCT
ACTTTGCCTCTGTAAGAGTCAGAACTAGCCCCAAAAGGTGTGTTCAATAC
TATACAGACCATGACCCCGTCCTCACTCCCCTTTCTCCCCCCCTAACACC
ACACAATATCAATTCTCAGACCACCAAGCTCACCGCCCTGCGTGCCACCC
CGGCGTCGACACCTGAACATGATGACCGCCGTTCCTGGTTTCAACAGGTG
GCGGTGTCAATGTTAGCCCTGTCCGCCACCAACACATTTCTTCGTCCGTC
TTCTGCCAGTGCGACCCGCTTTGACCAAGAAACGGTGCTCGACCCTATCT
ATCCCAACGTCACGGAGCCCGCCTTCACGTCTACCTGTTTCCTGGAATTT
GCCTCGGAGAACACCAAGTTTGGGAGAGTAGAGGTGTCACTTTATGGGAA
AGTATGTCCCAAAACAGCAGCTAATTTTGAGGCCTTGTGTCGGGAGGGGT
ACAAGGGGAGCAATGTCTATCGGGTGCTCAAAGATTTCTCAATTCAAATG
GGCGATATTGGAAGTAAGAAACGAGGGGTCATGGGTCGGTCTAGTTTTGA
GGGAGGGGCGCCTTTCGCGAAAGAAACGATGCAGGTGCAGCATTCATTGG
AAGGGATGCTCTCAATGGTGAATGACAGAGAAGGTAAAGTGGACTCGAGA
TTTTTCATCAACCTTGGGAAGGACGGTTCGTGGGCGGACGGACGGTATGT
GGCGTTTGGAAGGGTGACGAGGGGTTTGGAAGTCTTGAAGGAGCTGGAAA
AGGTGGAGGTGAAGCCACCCAGTAACGTCCCGGCGACTCCGATAAAGATT
GTGGAGGCCGGCGTGCTGGAGACCCGGACGAGGTAGATTAGAAATTCAAG
GAGGTAAGATCGACACTTAATTCGTCGTCAACTAGTCAGGAATCGGCGAC
GAAAAAGAGTAAAATGAAAGGAAGAGACCCAAGCAGCCAGAATTCAA
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Coding sequence (CDS) from alignment at chr7:924794..925940-

>NO07G03360.1 ID=NO07G03360.1|Name=NO07G03360.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr7:924794..925940- (Nannochloropsis oceanica)
ATGCCATCAATTCCACAACCTGGCCTCTTCCTCCTCGTGCTCTTGGGGAC
CAGTCTCGTCGTCCAGGGTTTTCTGCCGCCCACAAGTGTGCCAACAAGAG
AGACCACCAAGCTCACCGCCCTGCGTGCCACCCCGGCGTCGACACCTGAA
CATGATGACCGCCGTTCCTGGTTTCAACAGGTGGCGGTGTCAATGTTAGC
CCTGTCCGCCACCAACACATTTCTTCGTCCGTCTTCTGCCAGTGCGACCC
GCTTTGACCAAGAAACGGTGCTCGACCCTATCTATCCCAACGTCACGGAG
CCCGCCTTCACGTCTACCTGTTTCCTGGAATTTGCCTCGGAGAACACCAA
GTTTGGGAGAGTAGAGGTGTCACTTTATGGGAAAGTATGTCCCAAAACAG
CAGCTAATTTTGAGGCCTTGTGTCGGGAGGGGTACAAGGGGAGCAATGTC
TATCGGGTGCTCAAAGATTTCTCAATTCAAATGGGCGATATTGGAAGTAA
GAAACGAGGGGTCATGGGTCGGTCTAGTTTTGAGGGAGGGGCGCCTTTCG
CGAAAGAAACGATGCAGGTGCAGCATTCATTGGAAGGGATGCTCTCAATG
GTGAATGACAGAGAAGGTAAAGTGGACTCGAGATTTTTCATCAACCTTGG
GAAGGACGGTTCGTGGGCGGACGGACGGTATGTGGCGTTTGGAAGGGTGA
CGAGGGGTTTGGAAGTCTTGAAGGAGCTGGAAAAGGTGGAGGTGAAGCCA
CCCAGTAACGTCCCGGCGACTCCGATAAAGATTGTGGAGGCCGGCGTGCT
GGAGACCCGGACGAGGTAG
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Synonyms
Publications