NO07G03250.1, NO07G03250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03250.1
Unique NameNO07G03250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2297
Alignment locationchr7:898277..901037 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:898277..901037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03250.1 vs.
Match: EWM27055.1 (hypothetical protein Naga_100056g22 [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 2.000e-96
Identity = 248/501 (49.50%), Postives = 296/501 (59.08%), Query Frame = 0 
Query:    6 RSTSWNSTKDDAFGLEFEFGDLLVDTDHSHSLMEVTAMLEQVDGMPCGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPSSSVGHLQALRNASSSKKNAYPLTPVPSPCARF-QHQNHHQQPMQDENASPVEHGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAARVRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPTQQLEEHVALRSLSAYFAAAKMVDAA-----TGAGGAT---PSAVLQLHYVLRQDM---------------MNEWHPEENSLFDAFAASGLDQLPSS-APTAPSIYVTRTAVDTLVYRPQQQEQDQQKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIK-----------PSPFSSSSSSFESSGDSSVTQAGHP---GSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLTSESSRQSSFSNSGDDSQQ 468
            RSTSWNSTKDDAFGLEF+ GDL VDT+HS  LME++A +E  +   CG     QETP A HH  +         A +    +Q     P R+       +Q +        N +  TP P P   + QHQ      + DENA P+E G+ +         + H+  ++   S  KK  APR+NVRL+PQNS TAARVR AGYNPKLELSTPL KRVGFF+ HLA KWS+V GI SLSLRL VSP +QLEEHV+LRSL +YF  A  + A      TGAG  T   PSA+LQLHY+L +DM                + W PEENSLFDAFAA+GLDQLP +     P            V +   Q  ++ KKRRKR SLT+G A NRN+TFVNAAT+ I TPAP+K            +  SSSS S +SS D S +  G     G  KKRRRIRPTLL  G+ V+TSPSF  A CGIGS TSESSRQS FSNSGDDS Q
Sbjct:    4 RSTSWNSTKDDAFGLEFD-GDLFVDTEHS--LMELSATVEHNENTTCGKTATVQETPDAAHHQVEPVMT-----AGRAIFGEQDPSSVPLRKAHFGTAGVQLVNQGV----NLHQTTPSPRPFHPYLQHQ------IFDENAQPIERGASTV--------TRHSPSASHPGSSLKKAAAPRVNVRLVPQNSRTAARVRNAGYNPKLELSTPLSKRVGFFLGHLAKKWSNVSGINSLSLRLVVSPARQLEEHVSLRSLESYFTTATKMAAGPSPTPTGAGAVTPSSPSAILQLHYLLVEDMECDHNPAASHTTPARESPWGPEENSLFDAFAATGLDQLPCAILSDLPHSLPPSNVPPISVQQVDVQPVEEPKKRRKRASLTSGVASNRNDTFVNAATVEICTPAPVKQRATSFCSSVSTATSSSSSPSIDSSADRSRSVVGPKPALGQEKKRRRIRPTLLSAGQAVSTSPSFTMAHCGIGSFTSESSRQSCFSNSGDDSGQ 478
The following BLAST results are available for this feature:
BLAST of NO07G03250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27055.12.000e-9649.50hypothetical protein Naga_100056g22 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03250NO07G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03250.1NO07G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03250.1.cds1NO07G03250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03250.1.cds2NO07G03250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03250.1.cds3NO07G03250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03250.1 ID=NO07G03250.1|Name=NO07G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2297bp
AAAAAGGTAAGCAAGCAAAGTACTGCTATTCGTCGACGCGCGCGCCTCTC
TCGTGGGATTTACTTCCCTCCCTTGTCATTTTCTTTGCTCCACACGCTCA
GTGATGCAAGATCTCCTCCTTTAATGAAGGACGCAGCAATGCGTTTCCGC
ATACCGTGTTCTAAGCACGATGCCTCGCGTCCAACTCCCTGATTCGACTT
CCCTCCCTGCCCGACGACCGTCAAAATCATCCCCACAACCCACAGCTCGT
CAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCAGTACGTCTT
GGAACTCGACGAAAGACGACGCTTTTGGCTTGGAATTCGAATTCGGTGAC
CTGCTGGTGGATACGGACCACTCCCACTCGTTGATGGAAGTGACGGCCAT
GCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTTCACCGTGGAGCAAG
AAACACCGGTGGCAACGCACCATCACTCCCAACAATCTAGCTTGAACGCC
ACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAACAAACACCACAAGC
CCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCTGCAGGCGTTGAGGA
ATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCACTCCCGTGCCTTCT
CCTTGCGCGCGATTCCAGCATCAAAATCACCACCAACAACCCATGCAGGA
CGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAGCAGCATGCCATGCA
GCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCACCACCAGCAACAGC
GGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTCCGTCTCATGCCCCA
AAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGGGTACAACCCCAAGC
TAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTTTTTTCATCGACCAT
TTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCCTCCCTGTCGTTGCG
TTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCACGTGGCCTTGCGTT
CTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGGATGCTGCCACGGGT
GCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTGCACTATGTGCTGCG
GCAGGATATGATGAATGAGTGGCACCCTGAGGAGAATTCGCTTTTTGACG
CCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCTCTGCTCCTACCGCC
CCCTCAATCTATGTCACTAGGACCGCCGTCGATACTCTGGTTTATCGACC
GCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCGCAAGCGCGTGTCGC
TCACCACGGGAGATGCCTTCAATCGGAACGAGACCTTTGTCAACGCGGCC
ACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCCAGCCCTTTCTCCTC
CTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAGCGTAACGCAAGCCG
GGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCCGCCCAACGCTGCTG
CCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTTTTGCAGGCACAGTG
TGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCAGTCATCGTTTTCCA
ATTCGGGAGATGACTCGCAGCAATAGAGAGCGGAAGGAAGAGGAGAGGAG
GGTTGAGGAGGGGAGCGAGTCATGATTTTTTGTGCTAAATCATGGTCACG
AGAATCAGCACTTGTTTTAAAAGAAAGGTGACAGGGGGAAGCGGATTAGG
AAGAAGAAGAGGATTTGATTTGTGCAGGCACAAATCTGGCAATCAAGCAA
GAATAAAACTGAAGCGCACGCTAAAAGAAAGATGTGTGTGCTGCTGTGTA
TGAATGTATCATGAGAGATTTCAAAACAATGTGATAAGATAAGAGATTGC
GTGTACACCAACACGCACACACACACACACACGGATACATATAAACCAAC
CCACTCCCACATACGATGAGAGAAGGAGAATGGAGAGATAGAGAGATAAA
TGACTTATTCATCCGTAGAGAGGAACAGAATATAAATGAAAGTACCAGCA
CCCTTCATATGTCTTTTGAAACCAATAGTCAGTCATTCATGTCATTTCTG
CATCGTCATTGTCATACAATAGTGCTCACATCCCCGTCATCTCATCATCG
GCAGCGATACCAAAAACAATAAAGCACGCATCATGAGCACCCGCACACAT
TGATATAGAAGAAGGGTAAAACGAAAGCGGAAGGCGCTGCGTTTGAT
back to top

protein sequence of NO07G03250.1

>NO07G03250.1-protein ID=NO07G03250.1-protein|Name=NO07G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MTTFERSTSWNSTKDDAFGLEFEFGDLLVDTDHSHSLMEVTAMLEQVDGM
PCGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPSS
SVGHLQALRNASSSKKNAYPLTPVPSPCARFQHQNHHQQPMQDENASPVE
HGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAAR
VRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPTQ
QLEEHVALRSLSAYFAAAKMVDAATGAGGATPSAVLQLHYVLRQDMMNEW
HPEENSLFDAFAASGLDQLPSSAPTAPSIYVTRTAVDTLVYRPQQQEQDQ
QKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIKPSPFSSSSSSFES
SGDSSVTQAGHPGSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLTS
ESSRQSSFSNSGDDSQQ*
back to top

mRNA from alignment at chr7:898277..901037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03250.1 ID=NO07G03250.1|Name=NO07G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2761bp|location=Sequence derived from alignment at chr7:898277..901037- (Nannochloropsis oceanica)
AAAAAGGTAAGCAAGCAAAGTACTGCTATTCGTCGACGCGCGCGCCTCTC
TCGTGGGATTTACTTCCCTCCCTTGTCATTTTCTTTGCTCCACACGCTCA
GTGATGCAAGATCTCCTCCTTTAATGAAGGACGCAGCAATGCGTTTCCGC
ATACCGTGTTCTAAGCACGATGCCTCGCGTCCAACTCCCTGATTCGACTT
CCCTCCCTGCCCGACGACCGTCAAAATCATCCCCACAACCCACAGCTCGT
CAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCAGTACGTCTT
GGAACTCGACGAAAGGTACGTGTGTTCCCCATGCATGAGTTGACGTGGCA
TTGTCTCACCTCTTTTTACCGACAGCATTGCCACCTAAGGTCTTTTCCCT
CCCGTTTTCCGTGTGTTCCGACTGCCCTTCTGTTCGCCACGCCACACCCA
GGTTTTCCGCGCCTTTGGCTCACCTTCCCAACAACCGTACCCACCCAACA
ACACAGACGACGCTTTTGGCTTGGAATTCGAATTCGGTGACCTGCTGGTG
GATACGGACCACTCCCACTCGTTGATGGAAGTGACGGCCATGGTGAGTGC
GGGCACGGGTTCAGGAGGAGTTGAGAATTGCAAGTATGACGCGCAAGGGT
ATACGCAACCAATTGGGAATGCTGCGACACCAAACCTTACACTGGAATCA
TGTTGCTAACATTGTCTCTTTGCGGGACTTGAGCCCACACTCTCAGTTGA
GCGGCGAGCACGTGGCGGGAAAATAGAACCCACTTTGGAAGATTTCTTCC
CTTATTCATTCATCTGTCCGCTCACCTATGTGACACGAAACTCTCCTATC
TACCCACAACCACAGCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTT
CACCGTGGAGCAAGAAACACCGGTGGCAACGCACCATCACTCCCAACAAT
CTAGCTTGAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAA
CAAACACCACAAGCCCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCT
GCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCA
CTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGCATCAAAATCACCACCAA
CAACCCATGCAGGACGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAG
CAGCATGCCATGCAGCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCA
CCACCAGCAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTC
CGTCTCATGCCCCAAAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGG
GTACAACCCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTT
TTTTCATCGACCATTTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCC
TCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCA
CGTGGCCTTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGG
ATGCTGCCACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTG
CACTATGTGCTGCGGCAGGATATGATGAATGAGTGGCACCCTGAGGAGAA
TTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCT
CTGCTCCTACCGCCCCCTCAATCTATGTCACTAGGACCGCCGTCGATACT
CTGGTTTATCGACCGCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCG
CAAGCGCGTGTCGCTCACCACGGGAGATGCCTTCAATCGGAACGAGACCT
TTGTCAACGCGGCCACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCC
AGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAG
CGTAACGCAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCC
GCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTT
TTGCAGGCACAGTGTGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCA
GTCATCGTTTTCCAATTCGGGAGATGACTCGCAGCAATAGAGAGCGGAAG
GAAGAGGAGAGGAGGGTTGAGGAGGGGAGCGAGTCATGATTTTTTGTGCT
AAATCATGGTCACGAGAATCAGCACTTGTTTTAAAAGAAAGGTGACAGGG
GGAAGCGGATTAGGAAGAAGAAGAGGATTTGATTTGTGCAGGCACAAATC
TGGCAATCAAGCAAGAATAAAACTGAAGCGCACGCTAAAAGAAAGATGTG
TGTGCTGCTGTGTATGAATGTATCATGAGAGATTTCAAAACAATGTGATA
AGATAAGAGATTGCGTGTACACCAACACGCACACACACACACACACGGAT
ACATATAAACCAACCCACTCCCACATACGATGAGAGAAGGAGAATGGAGA
GATAGAGAGATAAATGACTTATTCATCCGTAGAGAGGAACAGAATATAAA
TGAAAGTACCAGCACCCTTCATATGTCTTTTGAAACCAATAGTCAGTCAT
TCATGTCATTTCTGCATCGTCATTGTCATACAATAGTGCTCACATCCCCG
TCATCTCATCATCGGCAGCGATACCAAAAACAATAAAGCACGCATCATGA
GCACCCGCACACATTGATATAGAAGAAGGGTAAAACGAAAGCGGAAGGCG
CTGCGTTTGAT
back to top

Coding sequence (CDS) from alignment at chr7:898277..901037-

>NO07G03250.1 ID=NO07G03250.1|Name=NO07G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr7:898277..901037- (Nannochloropsis oceanica)
ATGACCACATTTGAACGCAGTACGTCTTGGAACTCGACGAAAGACGACGC
TTTTGGCTTGGAATTCGAATTCGGTGACCTGCTGGTGGATACGGACCACT
CCCACTCGTTGATGGAAGTGACGGCCATGCTTGAGCAGGTCGACGGCATG
CCCTGTGGATCCTTCACCGTGGAGCAAGAAACACCGGTGGCAACGCACCA
TCACTCCCAACAATCTAGCTTGAACGCCACTGGCTTCGCCCCCAAGCAGC
AGCAAATGCAGCAACAAACACCACAAGCCCCACAACGGAGACCAAGCAGC
AGCGTAGGTCACCTGCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAAAAA
CGCCTACCCTCTCACTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGCATC
AAAATCACCACCAACAACCCATGCAGGACGAGAATGCCTCTCCGGTTGAG
CATGGCAGCGGAAGCAGCATGCCATGCAGCAACATTTCCTCGTCTCATCA
TGCGGGAGGTAGCACCACCAGCAACAGCGGTGCGAAGAAGGTTTTCGCCC
CGCGGATCAACGTCCGTCTCATGCCCCAAAACTCCGCGACTGCCGCACGG
GTCCGGCAAGCCGGGTACAACCCCAAGCTAGAGCTTTCTACGCCCTTGGG
CAAGCGCGTAGGTTTTTTCATCGACCATTTGGCCTCGAAATGGTCCGACG
TCCCGGGCATCGCCTCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACCCAA
CAGCTGGAGGAGCACGTGGCCTTGCGTTCTTTGAGCGCATACTTTGCCGC
GGCTAAGATGGTGGATGCTGCCACGGGTGCGGGTGGGGCGACGCCGTCGG
CGGTGCTACAGTTGCACTATGTGCTGCGGCAGGATATGATGAATGAGTGG
CACCCTGAGGAGAATTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCTGGA
CCAGCTGCCGAGCTCTGCTCCTACCGCCCCCTCAATCTATGTCACTAGGA
CCGCCGTCGATACTCTGGTTTATCGACCGCAACAGCAAGAGCAAGATCAG
CAGAAGAAGCGGCGCAAGCGCGTGTCGCTCACCACGGGAGATGCCTTCAA
TCGGAACGAGACCTTTGTCAACGCGGCCACGCTTGTCATCTCCACACCGG
CTCCCATCAAGCCCAGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAGTCG
TCGGGCGACAGCAGCGTAACGCAAGCCGGGCACCCGGGGTCAGGAAAAAA
GCGCCGCCGCATCCGCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGGCTA
CAAGTCCTAGCTTTTTGCAGGCACAGTGTGGGATTGGGAGCCTCACCTCC
GAGTCATCTCGTCAGTCATCGTTTTCCAATTCGGGAGATGACTCGCAGCA
ATAG
back to top
Synonyms
Publications