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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:870458..872597 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03130.1 vs.
Match: EWM27044.1 (eukaryotic translation initiation factor 2 subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 851.7 bits (2199), Expect = 1.100e-243 Identity = 429/461 (93.06%), Postives = 448/461 (97.18%), Query Frame = 0
Query: 1 MPMPDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVPGNYRAKGSSAPDVFEEDGKVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASSLNASAGEG 462
M +PDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKI+KC+PAE+GVPGNYRAKGSSAPDVFEEDGK W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQ++QIRKFVAGTVAD+SPIIPISAVKKFNID+VCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVL++GDQIEVRPGIVTKDA+GNVKCVPIFSQITSLFAEHNEL+FAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLP+V+TEVEISYYLLRRLLGVKTQDG K+AKVQKL AKEILMVNIGSTATGGKVLGLRED +REDYAKI+LTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTI + A+AGEG
Sbjct: 1 MSVPDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIYKCDPAEEGVPGNYRAKGSSAPDVFEEDGKTWRLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQHDQIRKFVAGTVADASPIIPISAVKKFNIDIVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLRVGDQIEVRPGIVTKDAKGNVKCVPIFSQITSLFAEHNELDFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPDVYTEVEISYYLLRRLLGVKTQDGGKQAKVQKLAAKEILMVNIGSTATGGKVLGLREDAARREDYAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTINV-----ATAGEG 456
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03130.1 ID=NO07G03130.1|Name=NO07G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp ATGCCTATGCCCGACCCCTCCACCCTCACCCCCCTGACGCCCGAGGTCAT CTCCAAGCAAGCTACCATAAATATCGGGACTATCGGTCACGTGGCGCACG GAAAATCGACGGTGGTGAAGGCAATCAGTGGCGTGAACACAGTCAGAACC AAGCCAGAGCTGGAGCGAAATATTACCATCAAGCTAGGGTACGCTAACGC CAAGATCTTTAAGTGTAACCCCGCAGAAGATGGCGTGCCAGGGAATTACC GAGCCAAGGGATCGTCTGCTCCTGACGTGTTTGAAGAGGATGGAAAGGTG TGGGAGTTGCAAAGGCATGTCTCCTTTGTTGATTGCCCGGGGCACGATAT TCTGATGGCCACGATGCTTAACGGCGCCGCAGTCATGGACGCCGCCCTCC TCCTCATCGCTGGCAATGAAGCTTGTCCTCAGCCACAGACGTCCGAGCAT CTGGCTGCCGTGGAAATCATGCGTCTCGCCAACATCATCATCTTGCAGAA TAAGGTGGATCTGGTCAAGCCCGCCGATGCCTCCATGCAATACGAACAGA TCCGCAAGTTCGTAGCTGGCACCGTCGCGGACTCCTCACCCATCATTCCC ATTTCTGCCGTTAAAAAGTTCAACATCGACGTGGTGTGCGAGTACCTTGT GAACCGCATTCCTGTCCCCCCTCGTGACTTCACCTCCTCCCCGCGGTTGA TCGTCATCCGCTCCTTCGACGTGAACAAGCCCGGGGAGCTAGTGGAGGAC CTCAAGGGCGGCGTGGCGGGCGGGAGTATCCTGCAGGGTGTGTTGAAGCT CGGCGACCAGATCGAGGTCCGGCCCGGCATAGTCACTAAGGACGCCGAGG GGAATGTGAAGTGCGTCCCCATCTTCAGCCAGATCACCTCCCTGTTTGCG GAGCACAACGAATTGGAATTCGCTGTACCCGGGGGCTTGATAGGCGTGGG AACGAGGATTGATCCCACCTTGACAAGGGCAGATCGCTTGGTGGGCCAGG TGTTGGGATTAAGAGGGCAGTTGCCCGAGGTCTTTACAGAGGTGGAAATA TCGTACTATCTGCTTCGGCGGCTCTTGGGCGTGAAGACCCAAGACGGGGA GAAGAAGGCGAAAGTGCAGAAACTGCAAGCCAAAGAGATATTGATGGTTA ATATTGGGAGCACGGCCACGGGCGGGAAGGTGTTGGGGCTGAGGGAGGAC GTGGGGAAGAGGGAGGATTATGCGAAAATTATGCTGACCCAGCCAGTGTG CACGCAGGAGGGGGAGAAGATTGCGTTGAGTCGACGGGTAGATAAGCACT GGAGGTTGATAGGATGGGGACAGATTAGGAGGGGCACCACGATTAAGATA GCGAGTAGTTTGAACGCGTCGGCAGGGGAAGGAGGAGGAGGTGGGGAGGA GGGGAAGTGA back to topprotein sequence of NO07G03130.1 >NO07G03130.1-protein ID=NO07G03130.1-protein|Name=NO07G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp MPMPDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRT KPELERNITIKLGYANAKIFKCNPAEDGVPGNYRAKGSSAPDVFEEDGKV WELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEH LAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIP ISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVED LKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFA EHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEI SYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLRED VGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKI ASSLNASAGEGGGGGEEGK* back to topmRNA from alignment at chr7:870458..872597+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03130.1 ID=NO07G03130.1|Name=NO07G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp|location=Sequence derived from alignment at chr7:870458..872597+ (Nannochloropsis oceanica) ATGGTACGTGTGCGTGCTTGCAGTCTGCCTGATTACTTTCTTTTCCTGCA
ATCCTTTCCTTCCGTTACCAAGCACACACGCGATGACTGAACTCTGTAGG
TTAGATGGTGCTTCTGTAGCTTCCTCCCGCCGTGACTTATTCTAAAACTC
CTCCAGCAATTCTTGTGAGCCTCATAATTTGTGTCTCTTTGCATGCCGCA
CCTGTCCGCAACACTCCAAAACATGCCTTTTGATAAGGCTTAATGTCCTT
CCTCATGGCTCACTCACTCCGGCCCTTACTCCTTCCCTTCGCTCTCCCTC
CTCTTAGCCTATGCCCGACCCCTCCACCCTCACCCCCCTGACGCCCGAGG
TCATCTCCAAGCAAGCTACCATAAATATCGGGACTATCGGTCACGTGGCG
CACGGAAAATCGACGGTGGTGAAGGCAATCAGTGGCGTGAACACAGTCAG
AACCAAGCCAGAGCTGGAGCGAAATATTACCATCAAGCTAGGGTAAGGCT
CATATCTCCTTCCTTCCCTCCCTCCTTGTGGAGATCCCAACCTAGTTCTC
AACCCTCCCTCCGCCCCTCCCTCCGTCCAAGGTACGCTAACGCCAAGATC
TTTAAGTGTAACCCCGCAGAAGATGGCGTGCCAGGGAATTACCGAGCCAA
GGGATCGTCTGCTCCTGACGTGTTTGAAGAGGATGGAAAGGTGTGGGAGT
TGCAAAGGCATGTCTCCTTTGTTGATTGCCCGGGGCACGATATTCTGGTA
CGTTGGGAGGGAGGGGAGGAGGGAGGGAAGGAGGAAAGAGGGGCTTAACG
TGTGCACGTGGCAACCAATAACATCGTCCCTTCTGTTTCCCTCCCTCGCA
TCCTCTTCCTCCTCCTCCCCGTCCTCCTCCTCCTTTCCCCAGATGGCCAC
GATGCTTAACGGCGCCGCAGTCATGGACGCCGCCCTCCTCCTCATCGCTG
GCAATGAAGCTTGTCCTCAGCCACAGACGTCCGAGCATCTGGCTGCCGTG
GAAATCATGCGTCTCGCCAACATCATCATCTTGCAGAATAAGGTGGATCT
GGTCAAGCCCGCCGATGCCTCCATGCAATACGAACAGGTAAACCCATCCT
CCCTTTCTTCCTCCCTCCCTCCATTCCTCCCTCCCTAGCTCCTGATTGCC
CGTCCGTCCCCATTTTCCTTTTCTTGTTTTCTCCTTGCCGCCTGAATCTT
TTATGTATCGTGTCTTTTCCATCTCCCTCTCCAACTCCCTCTCCCTCCCT
CCCTCCCTTTCTCCCTCTCTCCTCTACAGATCCGCAAGTTCGTAGCTGGC
ACCGTCGCGGACTCCTCACCCATCATTCCCATTTCTGCCGTTAAAAAGTT
CAACATCGACGTGGTGTGCGAGTACCTTGTGAACCGCATTCCTGTCCCCC
CTCGTGACTTCACCTCCTCCCCGCGGTTGATCGTCATCCGCTCCTTCGAC
GTGAACAAGCCCGGGGAGCTAGTGGAGGACCTCAAGGGCGGCGTGGCGGG
CGGGAGTATCCTGCAGGGTGTGTTGAAGCTCGGCGACCAGATCGAGGTCC
GGCCCGGCATAGTCACTAAGGACGCCGAGGGGAATGTGAAGTGCGTCCCC
ATCTTCAGCCAGATCACCTCCCTGTTTGCGGAGCACAACGAATTGGAATT
CGCTGTACCCGGGGGCTTGATAGGCGTGGGAACGAGGATTGATCCCACCT
TGACAAGGGCAGATCGCTTGGTGGGCCAGGTGTTGGGATTAAGAGGGCAG
TTGCCCGAGGTCTTTACAGAGGTGGAAATATCGTACTATCTGCTTCGGCG
GCTCTTGGGCGTGAAGACCCAAGACGGGGAGAAGAAGGCGAAAGTGCAGA
AACTGCAAGCCAAAGAGATATTGATGGTTAATATTGGGAGCACGGCCACG
GGCGGGAAGGTGTTGGGGCTGAGGGAGGACGTGGGGAAGAGGGAGGATTA
TGCGAAAATTATGCTGACCCAGCCAGTGTGCACGCAGGAGGGGGAGAAGA
TTGCGTTGAGTCGACGGGTAGATAAGCACTGGAGGTTGATAGGATGGGGA
CAGATTAGGAGGGGCACCACGATTAAGATAGCGAGTAGTTTGAACGCGTC
GGCAGGGGAAGGAGGAGGAGGTGGGGAGGAGGGGAAGTGA back to topCoding sequence (CDS) from alignment at chr7:870458..872597+ >NO07G03130.1 ID=NO07G03130.1|Name=NO07G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at chr7:870458..872597+ (Nannochloropsis oceanica) ATGCCTATGCCCGACCCCTCCACCCTCACCCCCCTGACGCCCGAGGTCAT CTCCAAGCAAGCTACCATAAATATCGGGACTATCGGTCACGTGGCGCACG GAAAATCGACGGTGGTGAAGGCAATCAGTGGCGTGAACACAGTCAGAACC AAGCCAGAGCTGGAGCGAAATATTACCATCAAGCTAGGGTACGCTAACGC CAAGATCTTTAAGTGTAACCCCGCAGAAGATGGCGTGCCAGGGAATTACC GAGCCAAGGGATCGTCTGCTCCTGACGTGTTTGAAGAGGATGGAAAGGTG TGGGAGTTGCAAAGGCATGTCTCCTTTGTTGATTGCCCGGGGCACGATAT TCTGATGGCCACGATGCTTAACGGCGCCGCAGTCATGGACGCCGCCCTCC TCCTCATCGCTGGCAATGAAGCTTGTCCTCAGCCACAGACGTCCGAGCAT CTGGCTGCCGTGGAAATCATGCGTCTCGCCAACATCATCATCTTGCAGAA TAAGGTGGATCTGGTCAAGCCCGCCGATGCCTCCATGCAATACGAACAGA TCCGCAAGTTCGTAGCTGGCACCGTCGCGGACTCCTCACCCATCATTCCC ATTTCTGCCGTTAAAAAGTTCAACATCGACGTGGTGTGCGAGTACCTTGT GAACCGCATTCCTGTCCCCCCTCGTGACTTCACCTCCTCCCCGCGGTTGA TCGTCATCCGCTCCTTCGACGTGAACAAGCCCGGGGAGCTAGTGGAGGAC CTCAAGGGCGGCGTGGCGGGCGGGAGTATCCTGCAGGGTGTGTTGAAGCT CGGCGACCAGATCGAGGTCCGGCCCGGCATAGTCACTAAGGACGCCGAGG GGAATGTGAAGTGCGTCCCCATCTTCAGCCAGATCACCTCCCTGTTTGCG GAGCACAACGAATTGGAATTCGCTGTACCCGGGGGCTTGATAGGCGTGGG AACGAGGATTGATCCCACCTTGACAAGGGCAGATCGCTTGGTGGGCCAGG TGTTGGGATTAAGAGGGCAGTTGCCCGAGGTCTTTACAGAGGTGGAAATA TCGTACTATCTGCTTCGGCGGCTCTTGGGCGTGAAGACCCAAGACGGGGA GAAGAAGGCGAAAGTGCAGAAACTGCAAGCCAAAGAGATATTGATGGTTA ATATTGGGAGCACGGCCACGGGCGGGAAGGTGTTGGGGCTGAGGGAGGAC GTGGGGAAGAGGGAGGATTATGCGAAAATTATGCTGACCCAGCCAGTGTG CACGCAGGAGGGGGAGAAGATTGCGTTGAGTCGACGGGTAGATAAGCACT GGAGGTTGATAGGATGGGGACAGATTAGGAGGGGCACCACGATTAAGATA GCGAGTAGTTTGAACGCGTCGGCAGGGGAAGGAGGAGGAGGTGGGGAGGA GGGGAAGTGA back to top
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