NO07G03020.1, NO07G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03020.1
Unique NameNO07G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr7:845532..846474 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:845532..846474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03020.1 vs.
Match: EWM27074.1 (hypothetical protein Naga_100194g5 [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 2.200e-37
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 0 
Query:   11 PAPVLLFLAVISILIGTSLSEAFIM---PVHSIVAARRRALTSSSIVSMSTSIEEGPSSPAATSTPTGS--SDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRTEDDE 163
            P   L  LAVIS+L    LSEAFI+   P   +V  RR    + SI+ MST   E  +S +  S+ T S  SDT  K+  PCK +PKC+GAYL +GC G GKIQGGIATFPLLGWWPIKAYRPCP+ TEAGYGYKRKGQDFSEFIAGERR + E +E
Sbjct:   44 PMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRR----THSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEE 196
The following BLAST results are available for this feature:
BLAST of NO07G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27074.12.200e-3760.51hypothetical protein Naga_100194g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03020NO07G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03020.1NO07G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03020.1.cds1NO07G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03020.1.cds2NO07G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03020.1 ID=NO07G03020.1|Name=NO07G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGGCCCGCCGCGCTGCAATCATCGGTACGCCCGCTCCAGTCCTCCTCTT
CCTTGCTGTCATTTCTATCCTTATCGGCACGTCCTTATCGGAGGCGTTTA
TCATGCCCGTCCACTCCATTGTCGCTGCTAGAAGAAGAGCGCTCACTTCA
TCTTCGATCGTGTCGATGAGCACCAGCATCGAGGAAGGCCCCTCTTCCCC
TGCCGCCACTTCCACGCCCACTGGCAGCAGCGATACGGGTCATAAGGCTG
ATCCCCCATGCAAAAAGTACCCCAAATGCAACGGGGCCTATCTAGGCAAA
GGTTGCGACGGCGCGGGCAAGATCCAAGGCGGCATTGCCACCTTTCCGCT
TTTGGGCTGGTGGCCGATCAAGGCATACAGGCCATGCCCGGCTTTGACCG
AGGCCGGCTATGGATACAAGCGGAAAGGACAGGACTTCTCGGAGTTTATC
GCAGGCGAGCGACGCACGAGGACCGAGGATGACGAATGA
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protein sequence of NO07G03020.1

>NO07G03020.1-protein ID=NO07G03020.1-protein|Name=NO07G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MARRAAIIGTPAPVLLFLAVISILIGTSLSEAFIMPVHSIVAARRRALTS
SSIVSMSTSIEEGPSSPAATSTPTGSSDTGHKADPPCKKYPKCNGAYLGK
GCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFI
AGERRTRTEDDE*
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mRNA from alignment at chr7:845532..846474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03020.1 ID=NO07G03020.1|Name=NO07G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=943bp|location=Sequence derived from alignment at chr7:845532..846474- (Nannochloropsis oceanica)
ATGGCCCGCCGCGCTGCAATCATCGGTACGCCCGCTCCAGTCCTCCTCTT
CCTTGCTGTCATTTCTATCCTTATCGGCACGTCCTTATCGGAGGCGTTTA
TCATGCCCGTCCACTCCATTGTCGCTGCTAGAAGAAGAGCGCTCACTTCA
TCTTCGATCGTGTCGATGAGCACCAGCATCGAGGAAGGCCCCTCTTCCCC
TGCCGCCACTTCCACGCCCACTGGCAGCAGCGATACGGGTCATAAGGCTG
ATCCCCCATGCAAAAAGTACCCCAAATGCAACGGGGCCTATCTAGGCAAA
GGTTGCGACGGCGCGGGCAAGATCCAAGGCGGCATTGCCACCTTTCCGCT
TTTGGGCTGGTGGCCGATCAAGGTAAAAGAGAATGGTCGAAAAAAAGAGA
GGGGTTAATGGATAATAACCGCTCTTTAATGTTTCTGTTCTTTGGGGCTT
TGCCGTTGTACGGAGCGCTCGCGGTTGCGTGTGAGTGTTTGTCTTTGTGT
GTGTGTGTGTCTCTCGGTTGGGGGACTTGTCTCTGCAGGCAATCATGCCT
GCTCCTTAGTTAAGTCCGCCGCATTAACATATGTTCGTGCTCGGCGTCTT
TCTTTTGCTCGCATCATTGCCTCCCCCAGAATTTCTAATGCGCTTCGTAA
GGACGGGATTGCTTACTTTCCTTGCGCCTTAATGAGCCAAAGATGCCAGC
CACCATTTGGTTATATCCATCTCTCTTTTTATTATTCCATTGTTTCTAGT
TTACCCCTCCCGCTTGACTACCTACCAAATTTACCAATGCCTGACGCATA
AATTACACACTTACTATTCTTTCAAGGCATACAGGCCATGCCCGGCTTTG
ACCGAGGCCGGCTATGGATACAAGCGGAAAGGACAGGACTTCTCGGAGTT
TATCGCAGGCGAGCGACGCACGAGGACCGAGGATGACGAATGA
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Coding sequence (CDS) from alignment at chr7:845532..846474-

>NO07G03020.1 ID=NO07G03020.1|Name=NO07G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr7:845532..846474- (Nannochloropsis oceanica)
ATGGCCCGCCGCGCTGCAATCATCGGTACGCCCGCTCCAGTCCTCCTCTT
CCTTGCTGTCATTTCTATCCTTATCGGCACGTCCTTATCGGAGGCGTTTA
TCATGCCCGTCCACTCCATTGTCGCTGCTAGAAGAAGAGCGCTCACTTCA
TCTTCGATCGTGTCGATGAGCACCAGCATCGAGGAAGGCCCCTCTTCCCC
TGCCGCCACTTCCACGCCCACTGGCAGCAGCGATACGGGTCATAAGGCTG
ATCCCCCATGCAAAAAGTACCCCAAATGCAACGGGGCCTATCTAGGCAAA
GGTTGCGACGGCGCGGGCAAGATCCAAGGCGGCATTGCCACCTTTCCGCT
TTTGGGCTGGTGGCCGATCAAGGCATACAGGCCATGCCCGGCTTTGACCG
AGGCCGGCTATGGATACAAGCGGAAAGGACAGGACTTCTCGGAGTTTATC
GCAGGCGAGCGACGCACGAGGACCGAGGATGACGAATGA
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Synonyms
Publications