NO07G03000.1, NO07G03000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03000.1
Unique NameNO07G03000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1093
Alignment locationchr7:839983..841075 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:839983..841075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03000.1 vs.
Match: EWM27071.1 (hypothetical protein Naga_100194g9 [Nannochloropsis gaditana])

HSP 1 Score: 214.5 bits (545), Expect = 2.800e-52
Identity = 111/198 (56.06%), Postives = 148/198 (74.75%), Query Frame = 0 
Query:    1 MAIPIQYAKQTCIIANVVSCILSAFALILSYKGLHLYRQQQDPSSCPLGVLLLGVLPAKAVSLSLFPAISLGWVALAIYLAQPQLKGLEGKIIDNGTFANIQRQCGTVMHRVNVGRMLCSVFSVLFLWRMSIFYKQLDET----EDGKEEDQFWFGYTMLMTGFGLLAALLNTLLYHRLQVSNRNLKQALKLRFRRTL 195
            M  PIQ+A+Q+C IAN+VS IL+ F+  L Y+G  +   +      P+   ++   PAK VS+S+FPA+SLGW+ALAIY AQPQLKG +G+ ID+ TF+ +QRQCG ++HRVN+ RMLCSVFSVLFLWR+SIF+ +L ++    +  +EE + WF YT LMTG GL AALLNT LYHRL +S+R LKQAL+LRFRR++
Sbjct:    1 METPIQHARQSCTIANLVSSILALFSSTLLYQGFRIEGNRLVSLQRPV---IMTYRPAKVVSMSVFPAMSLGWIALAIYFAQPQLKGFQGREIDHATFSVMQRQCGIIVHRVNIARMLCSVFSVLFLWRLSIFFHELGKSTIAADGSREEVEKWFTYTKLMTGMGLSAALLNTYLYHRLVLSHRRLKQALRLRFRRSM 195
The following BLAST results are available for this feature:
BLAST of NO07G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27071.12.800e-5256.06hypothetical protein Naga_100194g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03000NO07G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03000.1NO07G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03000.1.cds1NO07G03000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03000.1 ID=NO07G03000.1|Name=NO07G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp
TGGGAATGAGGCGCAGACATTTGCTATCCAGGAAGGGCTGATCCACACAC
ACACACAATACAATACGATGATACTATATGATGTATGACGCCTCGCTTGT
TCCTCACAATCGTATTGACCACAGGAGCTCTCAGGTCACAATCAAACACC
GCATGCACAGGCAAGGACAGGGAATAGAGGAGAAAGGCAAGACAGCAACA
GTTCGGTGTGCTGGATTGAGGCTGACCGCACCGTCACGGAGACCTCCTCA
AAGGACCAGACTCGACCTCCTATCCCTAAAGGTATTATGGCCATTCCAAT
ACAATACGCCAAACAGACTTGCATCATTGCCAATGTAGTCTCCTGCATCC
TTTCCGCTTTTGCTCTCATTCTCTCCTACAAAGGCCTGCACCTATACCGG
CAACAACAAGACCCCTCATCTTGTCCTCTTGGTGTCCTGCTCCTTGGCGT
CCTGCCCGCCAAAGCCGTGTCCCTCAGTTTATTCCCCGCGATCTCACTAG
GATGGGTGGCCCTTGCCATTTATCTCGCCCAACCACAGCTTAAAGGACTG
GAGGGCAAAATCATAGACAATGGCACTTTTGCCAATATTCAACGGCAGTG
TGGCACGGTAATGCATCGTGTCAATGTAGGACGGATGCTCTGTAGCGTGT
TTTCAGTGTTATTTTTGTGGCGTATGAGTATTTTTTACAAGCAACTGGAC
GAAACTGAGGACGGGAAGGAGGAGGATCAGTTTTGGTTTGGGTATACTAT
GCTCATGACGGGCTTTGGGCTGTTGGCGGCGCTGTTGAACACGCTGCTGT
ACCATCGATTGCAGGTGTCAAACAGAAATTTGAAGCAAGCATTGAAACTG
CGGTTTCGACGAACACTGTAGCACTGTCGCCAGCAACCACTGAATTTAAA
TAAATCAACAAATAACTTAGAGTAATAGGAGGATTGAGAGATCATCAGGC
TACGTCGTGCTCGTAAAAGTAAGTAGGGGGCAAACATTGCACGTACCATA
GGCGCACATTTCCCCCAATGGAAGAGGAATAGAAACCAAAACAAAAGGAG
AGCTTGGAAAAAAAAAGTTATAGCAAACATGTTTCTCCGGGGC
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protein sequence of NO07G03000.1

>NO07G03000.1-protein ID=NO07G03000.1-protein|Name=NO07G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MAIPIQYAKQTCIIANVVSCILSAFALILSYKGLHLYRQQQDPSSCPLGV
LLLGVLPAKAVSLSLFPAISLGWVALAIYLAQPQLKGLEGKIIDNGTFAN
IQRQCGTVMHRVNVGRMLCSVFSVLFLWRMSIFYKQLDETEDGKEEDQFW
FGYTMLMTGFGLLAALLNTLLYHRLQVSNRNLKQALKLRFRRTL*
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mRNA from alignment at chr7:839983..841075+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03000.1 ID=NO07G03000.1|Name=NO07G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp|location=Sequence derived from alignment at chr7:839983..841075+ (Nannochloropsis oceanica)
TGGGAATGAGGCGCAGACATTTGCTATCCAGGAAGGGCTGATCCACACAC
ACACACAATACAATACGATGATACTATATGATGTATGACGCCTCGCTTGT
TCCTCACAATCGTATTGACCACAGGAGCTCTCAGGTCACAATCAAACACC
GCATGCACAGGCAAGGACAGGGAATAGAGGAGAAAGGCAAGACAGCAACA
GTTCGGTGTGCTGGATTGAGGCTGACCGCACCGTCACGGAGACCTCCTCA
AAGGACCAGACTCGACCTCCTATCCCTAAAGGTATTATGGCCATTCCAAT
ACAATACGCCAAACAGACTTGCATCATTGCCAATGTAGTCTCCTGCATCC
TTTCCGCTTTTGCTCTCATTCTCTCCTACAAAGGCCTGCACCTATACCGG
CAACAACAAGACCCCTCATCTTGTCCTCTTGGTGTCCTGCTCCTTGGCGT
CCTGCCCGCCAAAGCCGTGTCCCTCAGTTTATTCCCCGCGATCTCACTAG
GATGGGTGGCCCTTGCCATTTATCTCGCCCAACCACAGCTTAAAGGACTG
GAGGGCAAAATCATAGACAATGGCACTTTTGCCAATATTCAACGGCAGTG
TGGCACGGTAATGCATCGTGTCAATGTAGGACGGATGCTCTGTAGCGTGT
TTTCAGTGTTATTTTTGTGGCGTATGAGTATTTTTTACAAGCAACTGGAC
GAAACTGAGGACGGGAAGGAGGAGGATCAGTTTTGGTTTGGGTATACTAT
GCTCATGACGGGCTTTGGGCTGTTGGCGGCGCTGTTGAACACGCTGCTGT
ACCATCGATTGCAGGTGTCAAACAGAAATTTGAAGCAAGCATTGAAACTG
CGGTTTCGACGAACACTGTAGCACTGTCGCCAGCAACCACTGAATTTAAA
TAAATCAACAAATAACTTAGAGTAATAGGAGGATTGAGAGATCATCAGGC
TACGTCGTGCTCGTAAAAGTAAGTAGGGGGCAAACATTGCACGTACCATA
GGCGCACATTTCCCCCAATGGAAGAGGAATAGAAACCAAAACAAAAGGAG
AGCTTGGAAAAAAAAAGTTATAGCAAACATGTTTCTCCGGGGC
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Coding sequence (CDS) from alignment at chr7:839983..841075+

>NO07G03000.1 ID=NO07G03000.1|Name=NO07G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr7:839983..841075+ (Nannochloropsis oceanica)
ATGGCCATTCCAATACAATACGCCAAACAGACTTGCATCATTGCCAATGT
AGTCTCCTGCATCCTTTCCGCTTTTGCTCTCATTCTCTCCTACAAAGGCC
TGCACCTATACCGGCAACAACAAGACCCCTCATCTTGTCCTCTTGGTGTC
CTGCTCCTTGGCGTCCTGCCCGCCAAAGCCGTGTCCCTCAGTTTATTCCC
CGCGATCTCACTAGGATGGGTGGCCCTTGCCATTTATCTCGCCCAACCAC
AGCTTAAAGGACTGGAGGGCAAAATCATAGACAATGGCACTTTTGCCAAT
ATTCAACGGCAGTGTGGCACGGTAATGCATCGTGTCAATGTAGGACGGAT
GCTCTGTAGCGTGTTTTCAGTGTTATTTTTGTGGCGTATGAGTATTTTTT
ACAAGCAACTGGACGAAACTGAGGACGGGAAGGAGGAGGATCAGTTTTGG
TTTGGGTATACTATGCTCATGACGGGCTTTGGGCTGTTGGCGGCGCTGTT
GAACACGCTGCTGTACCATCGATTGCAGGTGTCAAACAGAAATTTGAAGC
AAGCATTGAAACTGCGGTTTCGACGAACACTGTAG
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Synonyms
Publications