NO07G02970.1, NO07G02970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02970.1
Unique NameNO07G02970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length582
Alignment locationchr7:834874..835640 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:834874..835640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02970.1 vs.
Match: EWM27075.1 (30s ribosomal protein s17 [Nannochloropsis gaditana])

HSP 1 Score: 172.9 bits (437), Expect = 9.400e-40
Identity = 104/199 (52.26%), Postives = 127/199 (63.82%), Query Frame = 0 
Query:    1 MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSC-SRSLSVLASSNRKACPFLLSQHKRMPQQQHE-----LLPLPRGLSTSRDSSAAQHETDAAEGAAPEGDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI 194
            M    G GL RWV  A   +     P +    P  + +C SRSL+   S+   +   +     R   + H      L+   RG ST R+S AA  +  A E    E ++LE PKPPRNS+VGVV+SDKMDKSIVVKVSRLKL+LPYMVRK+  KKIMAHDE NECG+GD VR+KPSRPLSKRK F LHE+IR++PKLTI
Sbjct:    1 MLGHAGLGLRRWVGNA---VKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHHHHHGSPLMAFSRGFSTPRESPAADLDVPA-ESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195
The following BLAST results are available for this feature:
BLAST of NO07G02970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27075.19.400e-4052.2630s ribosomal protein s17 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02970NO07G02970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02970.1NO07G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02970.1.cds1NO07G02970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02970.1.cds2NO07G02970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02970.1 ID=NO07G02970.1|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGGTGGGTGTGCGGCGCGCC
CGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTCCTCCATCATCATCCCAT
ACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTGTCCTGGCCTCGTCCAAC
CGAAAGGCCTGCCCCTTCCTTCTCTCCCAACATAAGCGCATGCCACAGCA
GCAGCATGAACTTCTACCACTACCACGAGGACTGTCGACGAGCAGAGACA
GCAGCGCGGCGCAACACGAGACAGACGCAGCAGAGGGAGCAGCGCCAGAA
GGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGCAATTCCATGGTGGGTGT
TGTAGTATCGGACAAGATGGACAAGTCCATTGTGGTCAAGGTCTCACGTT
TGAAGCTTTTTTTGCCTTACATGGTGCGGAAGCGGACGTTTAAGAAGATT
ATGGCCCACGACGAGGCCAACGAGTGTGGGGTTGGGGATATCGTTCGTGT
CAAGCCATCGCGGCCGTTGAGCAAGCGAAAGAGCTTTGCCTTGCATGAGA
TTATTCGCAAGGACCCCAAGCTGACGATATGA
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protein sequence of NO07G02970.1

>NO07G02970.1-protein ID=NO07G02970.1-protein|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSCSRSLSVLASSN
RKACPFLLSQHKRMPQQQHELLPLPRGLSTSRDSSAAQHETDAAEGAAPE
GDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKI
MAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI*
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mRNA from alignment at chr7:834874..835640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02970.1 ID=NO07G02970.1|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=767bp|location=Sequence derived from alignment at chr7:834874..835640- (Nannochloropsis oceanica)
ATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGGTGGGTGTGCGGCGCGCC
CGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTCCTCCATCATCATCCCAT
ACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTGTCCTGGCCTCGTCCAAC
CGAAAGGCCTGCCCCTTCCTTCTCTCCCAACATAAGCGCATGCCACAGCA
GCAGCATGAACTTCTACCACTACCACGAGGACTGTCGACGAGCAGAGACA
GCAGCGCGGCGCAACACGAGACAGACGCAGCAGAGGGAGCAGCGCCAGAA
GGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGCAATTCCATGGTGGGTGT
TGTAGTATCGGACAAGATGGACAAGTCCATTGTGGTCAAGGTGAGCTTTT
GAGTGCTTGGGTGGCTTGGGTGGGCGGCATGGATTAGGCAAAAAGGGAGG
GGGATATGCCTGAGGATGCTTTTCTATTGTGTGCAATGTCTTAAAACACA
CACACACTCTGTAGGAACAGTTTCGATTCCTACCTTATCCCCCACACATC
CATAAACATATTTAACACCTGATAGGTCTCACGTTTGAAGCTTTTTTTGC
CTTACATGGTGCGGAAGCGGACGTTTAAGAAGATTATGGCCCACGACGAG
GCCAACGAGTGTGGGGTTGGGGATATCGTTCGTGTCAAGCCATCGCGGCC
GTTGAGCAAGCGAAAGAGCTTTGCCTTGCATGAGATTATTCGCAAGGACC
CCAAGCTGACGATATGA
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Coding sequence (CDS) from alignment at chr7:834874..835640-

>NO07G02970.1 ID=NO07G02970.1|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr7:834874..835640- (Nannochloropsis oceanica)
ATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGGTGGGTGTGCGGCGCGCC
CGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTCCTCCATCATCATCCCAT
ACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTGTCCTGGCCTCGTCCAAC
CGAAAGGCCTGCCCCTTCCTTCTCTCCCAACATAAGCGCATGCCACAGCA
GCAGCATGAACTTCTACCACTACCACGAGGACTGTCGACGAGCAGAGACA
GCAGCGCGGCGCAACACGAGACAGACGCAGCAGAGGGAGCAGCGCCAGAA
GGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGCAATTCCATGGTGGGTGT
TGTAGTATCGGACAAGATGGACAAGTCCATTGTGGTCAAGGTCTCACGTT
TGAAGCTTTTTTTGCCTTACATGGTGCGGAAGCGGACGTTTAAGAAGATT
ATGGCCCACGACGAGGCCAACGAGTGTGGGGTTGGGGATATCGTTCGTGT
CAAGCCATCGCGGCCGTTGAGCAAGCGAAAGAGCTTTGCCTTGCATGAGA
TTATTCGCAAGGACCCCAAGCTGACGATATGA
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Synonyms
Publications