NO07G02920.1, NO07G02920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02920.1
Unique NameNO07G02920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1863
Alignment locationchr7:821924..823786 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:821924..823786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02920.1 vs.
Match: EWM27103.1 (Ion transport [Nannochloropsis gaditana])

HSP 1 Score: 725.7 bits (1872), Expect = 1.200e-205
Identity = 398/606 (65.68%), Postives = 460/606 (75.91%), Query Frame = 0 
Query:   23 ITIGEAHRTEEKQSRKIVREAKQVLAYQDSTFSDQFNAMRVLTFVTLEHPRSSRLAWYISIFLVGCILLNSLAFISSTVPSVLRYPTSCANPICTPGPDTVCPEVVCRPLENRTTWMLELITIIIFTIDYVLRVFCVPPVPVDLVFPRSLEYTIDGRLKDRSRYYRMSTCQKVTKYVTSGLNIIDVVSIVPYYISLFAGGSYTFLRIFRFLRFLLIFKLGRRFREAGAIISRTLRASLPALLIFVFLTTVMAVTFGSIMYYFEGGVYSVTLEFPSGGFLRPNARNTALEQSPFTSIIMGIYWYIVNTTTLGNAALFPTTTGGRIASCFIAYFGLLSLALPITIIGQNFSQQYNLVYADPDSQPHLFYPPTPRTPRTPR--------RKGGAPGSADGFLGHSIVGGGKEDLSYVSPEQEIEALRAEFQQQVDGLRMHMQQQGSKAASSAPSQQEVDSLKAYVQREISSMRTAMNGATDRGQFQQQPQQPQQQHQQQQQQQQQGFREGGYGRMSSEDVDTRSFPMPVGRETVRENVFREQGRETNFRDRESAEALRQRQREEEEERENQTQRSLREAEINSFRNQITEGIGRFSPQAELETFRGGLY 621
            +T+ +AHRTEEKQSRKIVREAKQVL+Y DSTFSDQ NA+RVL FVTLEHPRSSRLAWYISIFLV CILLN+++F+  T+PS LR+PT+CA+P+C PGP T C EVVCRP ENR  W LEL TI+IFTIDY+LRVFCVP VPVDLVFPRSLEYTIDGRLKDRS YYRM  C+K TKY+ SGLNIIDV+SIVP+Y+ L A   Y  +R+FRFLRFLLIFKLGRRFREAGAIISRTLRASLPALLIFVFLTTV+A+ FGS+M+YFEGG+YSVT+EFP+GGFLRPN RNTALEQSPF SI  G+YWY+VNTTTLGNA L+PTTTGGRIASCFIAY GLLSLALPITIIGQNFSQQYNLVYADPD QPHLFYP TP TPRTP+        RKG APG+ DGF   S +GG K+D+ YV PEQEIEALRA FQQQ+D LR+H+  QGS AAS+AP+QQEVD+L++YVQREI S++ ++N    R           +  ++      + F     GR            M + R +      R +  E   R+  + ++LR                    AEIN FRNQITEGI RFSPQAELE+ RGGLY
Sbjct:   18 LTVSDAHRTEEKQSRKIVREAKQVLSYSDSTFSDQLNALRVLIFVTLEHPRSSRLAWYISIFLVACILLNAISFMVGTIPSTLRHPTTCADPVCEPGPTTFCTEVVCRPRENRIIWHLELWTIVIFTIDYLLRVFCVPAVPVDLVFPRSLEYTIDGRLKDRSNYYRMDPCKKTTKYMLSGLNIIDVISIVPFYVYLLA--PYPAIRVFRFLRFLLIFKLGRRFREAGAIISRTLRASLPALLIFVFLTTVLAIVFGSMMFYFEGGIYSVTMEFPAGGFLRPNDRNTALEQSPFQSIFTGVYWYVVNTTTLGNANLYPTTTGGRIASCFIAYCGLLSLALPITIIGQNFSQQYNLVYADPDMQPHLFYPSTPHTPRTPKGGPSQTPGRKGLAPGTRDGF--RSKMGGEKQDIDYVPPEQEIEALRAHFQQQIDALRLHV--QGSTAASAAPAQQEVDALRSYVQREIGSLKMSLNDVQGR---------TPRASEESDTTASRAFSPSNDGR-----------NMDMSRSSNAGAQRRREQEEEEDREHAAQQSLRD-------------------AEINRFRNQITEGIRRFSPQAELESLRGGLY 578
The following BLAST results are available for this feature:
BLAST of NO07G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27103.11.200e-20565.68Ion transport [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02920NO07G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02920.1NO07G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02920.1.cds1NO07G02920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02920.1 ID=NO07G02920.1|Name=NO07G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp
ATGGCAGGCCACACGGAGGTGCAGGCGTCCACCCCACCGTACAATAGTAG
CGGCAAAGGTATGAACATCACGATTGGTGAAGCTCATCGCACCGAGGAGA
AGCAGTCCAGGAAGATCGTGCGGGAAGCCAAGCAAGTCCTGGCCTACCAA
GACAGCACCTTTTCCGACCAATTCAATGCCATGCGTGTCCTGACATTCGT
CACCTTGGAGCATCCCCGCTCAAGTCGGCTTGCATGGTACATCTCTATCT
TTCTCGTGGGCTGCATCCTTCTCAACTCACTCGCCTTCATCAGCAGCACC
GTCCCTTCCGTCTTACGGTACCCGACCTCTTGCGCGAACCCAATCTGCAC
CCCCGGACCCGACACAGTGTGTCCTGAAGTCGTCTGCCGACCTCTGGAAA
ACCGCACTACATGGATGTTGGAGCTTATTACCATCATTATCTTCACCATC
GACTACGTACTGCGTGTGTTTTGCGTGCCCCCTGTGCCCGTCGATCTGGT
CTTCCCTCGCTCCCTCGAGTACACCATCGACGGGCGCCTTAAGGACCGCT
CGCGCTACTACCGTATGTCAACCTGTCAGAAGGTGACCAAGTATGTGACG
TCAGGCCTTAATATCATCGACGTTGTCTCCATCGTCCCCTACTACATCTC
CCTCTTCGCCGGCGGATCCTATACTTTCCTCCGCATTTTCCGCTTCCTGC
GGTTTCTGCTAATCTTCAAGCTAGGGCGGCGTTTTAGGGAAGCTGGTGCA
ATCATCTCCAGAACGCTCCGCGCCTCCCTTCCTGCCTTGCTTATCTTCGT
CTTTTTGACGACGGTCATGGCAGTGACTTTCGGCTCAATCATGTACTACT
TTGAAGGAGGGGTTTATAGCGTCACTTTGGAGTTTCCATCTGGTGGTTTC
CTGAGACCCAATGCACGAAACACGGCCCTGGAACAATCGCCGTTTACGTC
CATTATAATGGGCATCTATTGGTATATCGTGAATACAACCACACTCGGCA
ATGCCGCCCTCTTCCCCACCACCACCGGCGGACGGATTGCCTCCTGTTTT
ATCGCGTACTTTGGCCTCCTATCCCTCGCCCTGCCCATCACCATCATCGG
CCAGAATTTCTCCCAGCAATACAACCTTGTCTACGCCGATCCCGACAGCC
AACCCCATCTCTTCTACCCCCCGACCCCTCGCACCCCCAGAACGCCGCGT
CGGAAGGGCGGAGCCCCCGGCTCTGCAGACGGCTTTCTTGGCCACTCCAT
TGTCGGTGGCGGGAAAGAAGACTTGAGTTATGTCTCCCCTGAGCAGGAAA
TCGAGGCATTGCGCGCAGAGTTCCAGCAGCAGGTCGACGGATTGCGAATG
CATATGCAGCAGCAAGGCTCCAAAGCCGCCTCTTCCGCCCCGTCGCAGCA
GGAGGTGGATTCGTTGAAGGCTTATGTGCAGCGAGAGATCAGCAGCATGA
GAACGGCGATGAATGGCGCGACCGACCGTGGACAGTTTCAACAACAGCCG
CAACAGCCTCAACAACAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGGG
ATTTAGAGAGGGTGGATATGGGAGGATGTCGTCGGAAGATGTGGATACTA
GATCGTTCCCGATGCCCGTGGGTCGGGAAACAGTGAGGGAGAATGTTTTC
AGGGAGCAAGGGAGGGAAACCAATTTCCGAGACAGAGAGAGCGCGGAGGC
GTTAAGGCAGAGGCAGAGGGAGGAGGAGGAGGAGAGAGAGAACCAGACGC
AGCGGTCGTTGAGGGAGGCGGAGATTAATAGTTTCAGGAATCAGATAACT
GAAGGTATTGGGAGGTTTAGTCCGCAGGCTGAGCTGGAGACGTTCCGAGG
GGGGTTGTATTAG
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protein sequence of NO07G02920.1

>NO07G02920.1-protein ID=NO07G02920.1-protein|Name=NO07G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MAGHTEVQASTPPYNSSGKGMNITIGEAHRTEEKQSRKIVREAKQVLAYQ
DSTFSDQFNAMRVLTFVTLEHPRSSRLAWYISIFLVGCILLNSLAFISST
VPSVLRYPTSCANPICTPGPDTVCPEVVCRPLENRTTWMLELITIIIFTI
DYVLRVFCVPPVPVDLVFPRSLEYTIDGRLKDRSRYYRMSTCQKVTKYVT
SGLNIIDVVSIVPYYISLFAGGSYTFLRIFRFLRFLLIFKLGRRFREAGA
IISRTLRASLPALLIFVFLTTVMAVTFGSIMYYFEGGVYSVTLEFPSGGF
LRPNARNTALEQSPFTSIIMGIYWYIVNTTTLGNAALFPTTTGGRIASCF
IAYFGLLSLALPITIIGQNFSQQYNLVYADPDSQPHLFYPPTPRTPRTPR
RKGGAPGSADGFLGHSIVGGGKEDLSYVSPEQEIEALRAEFQQQVDGLRM
HMQQQGSKAASSAPSQQEVDSLKAYVQREISSMRTAMNGATDRGQFQQQP
QQPQQQHQQQQQQQQQGFREGGYGRMSSEDVDTRSFPMPVGRETVRENVF
REQGRETNFRDRESAEALRQRQREEEEERENQTQRSLREAEINSFRNQIT
EGIGRFSPQAELETFRGGLY*
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mRNA from alignment at chr7:821924..823786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02920.1 ID=NO07G02920.1|Name=NO07G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr7:821924..823786+ (Nannochloropsis oceanica)
ATGGCAGGCCACACGGAGGTGCAGGCGTCCACCCCACCGTACAATAGTAG
CGGCAAAGGTATGAACATCACGATTGGTGAAGCTCATCGCACCGAGGAGA
AGCAGTCCAGGAAGATCGTGCGGGAAGCCAAGCAAGTCCTGGCCTACCAA
GACAGCACCTTTTCCGACCAATTCAATGCCATGCGTGTCCTGACATTCGT
CACCTTGGAGCATCCCCGCTCAAGTCGGCTTGCATGGTACATCTCTATCT
TTCTCGTGGGCTGCATCCTTCTCAACTCACTCGCCTTCATCAGCAGCACC
GTCCCTTCCGTCTTACGGTACCCGACCTCTTGCGCGAACCCAATCTGCAC
CCCCGGACCCGACACAGTGTGTCCTGAAGTCGTCTGCCGACCTCTGGAAA
ACCGCACTACATGGATGTTGGAGCTTATTACCATCATTATCTTCACCATC
GACTACGTACTGCGTGTGTTTTGCGTGCCCCCTGTGCCCGTCGATCTGGT
CTTCCCTCGCTCCCTCGAGTACACCATCGACGGGCGCCTTAAGGACCGCT
CGCGCTACTACCGTATGTCAACCTGTCAGAAGGTGACCAAGTATGTGACG
TCAGGCCTTAATATCATCGACGTTGTCTCCATCGTCCCCTACTACATCTC
CCTCTTCGCCGGCGGATCCTATACTTTCCTCCGCATTTTCCGCTTCCTGC
GGTTTCTGCTAATCTTCAAGCTAGGGCGGCGTTTTAGGGAAGCTGGTGCA
ATCATCTCCAGAACGCTCCGCGCCTCCCTTCCTGCCTTGCTTATCTTCGT
CTTTTTGACGACGGTCATGGCAGTGACTTTCGGCTCAATCATGTACTACT
TTGAAGGAGGGGTTTATAGCGTCACTTTGGAGTTTCCATCTGGTGGTTTC
CTGAGACCCAATGCACGAAACACGGCCCTGGAACAATCGCCGTTTACGTC
CATTATAATGGGCATCTATTGGTATATCGTGAATACAACCACACTCGGCA
ATGCCGCCCTCTTCCCCACCACCACCGGCGGACGGATTGCCTCCTGTTTT
ATCGCGTACTTTGGCCTCCTATCCCTCGCCCTGCCCATCACCATCATCGG
CCAGAATTTCTCCCAGCAATACAACCTTGTCTACGCCGATCCCGACAGCC
AACCCCATCTCTTCTACCCCCCGACCCCTCGCACCCCCAGAACGCCGCGT
CGGAAGGGCGGAGCCCCCGGCTCTGCAGACGGCTTTCTTGGCCACTCCAT
TGTCGGTGGCGGGAAAGAAGACTTGAGTTATGTCTCCCCTGAGCAGGAAA
TCGAGGCATTGCGCGCAGAGTTCCAGCAGCAGGTCGACGGATTGCGAATG
CATATGCAGCAGCAAGGCTCCAAAGCCGCCTCTTCCGCCCCGTCGCAGCA
GGAGGTGGATTCGTTGAAGGCTTATGTGCAGCGAGAGATCAGCAGCATGA
GAACGGCGATGAATGGCGCGACCGACCGTGGACAGTTTCAACAACAGCCG
CAACAGCCTCAACAACAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGGG
ATTTAGAGAGGGTGGATATGGGAGGATGTCGTCGGAAGATGTGGATACTA
GATCGTTCCCGATGCCCGTGGGTCGGGAAACAGTGAGGGAGAATGTTTTC
AGGGAGCAAGGGAGGGAAACCAATTTCCGAGACAGAGAGAGCGCGGAGGC
GTTAAGGCAGAGGCAGAGGGAGGAGGAGGAGGAGAGAGAGAACCAGACGC
AGCGGTCGTTGAGGGAGGCGGAGATTAATAGTTTCAGGAATCAGATAACT
GAAGGTATTGGGAGGTTTAGTCCGCAGGCTGAGCTGGAGACGTTCCGAGG
GGGGTTGTATTAG
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Coding sequence (CDS) from alignment at chr7:821924..823786+

>NO07G02920.1 ID=NO07G02920.1|Name=NO07G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr7:821924..823786+ (Nannochloropsis oceanica)
ATGGCAGGCCACACGGAGGTGCAGGCGTCCACCCCACCGTACAATAGTAG
CGGCAAAGGTATGAACATCACGATTGGTGAAGCTCATCGCACCGAGGAGA
AGCAGTCCAGGAAGATCGTGCGGGAAGCCAAGCAAGTCCTGGCCTACCAA
GACAGCACCTTTTCCGACCAATTCAATGCCATGCGTGTCCTGACATTCGT
CACCTTGGAGCATCCCCGCTCAAGTCGGCTTGCATGGTACATCTCTATCT
TTCTCGTGGGCTGCATCCTTCTCAACTCACTCGCCTTCATCAGCAGCACC
GTCCCTTCCGTCTTACGGTACCCGACCTCTTGCGCGAACCCAATCTGCAC
CCCCGGACCCGACACAGTGTGTCCTGAAGTCGTCTGCCGACCTCTGGAAA
ACCGCACTACATGGATGTTGGAGCTTATTACCATCATTATCTTCACCATC
GACTACGTACTGCGTGTGTTTTGCGTGCCCCCTGTGCCCGTCGATCTGGT
CTTCCCTCGCTCCCTCGAGTACACCATCGACGGGCGCCTTAAGGACCGCT
CGCGCTACTACCGTATGTCAACCTGTCAGAAGGTGACCAAGTATGTGACG
TCAGGCCTTAATATCATCGACGTTGTCTCCATCGTCCCCTACTACATCTC
CCTCTTCGCCGGCGGATCCTATACTTTCCTCCGCATTTTCCGCTTCCTGC
GGTTTCTGCTAATCTTCAAGCTAGGGCGGCGTTTTAGGGAAGCTGGTGCA
ATCATCTCCAGAACGCTCCGCGCCTCCCTTCCTGCCTTGCTTATCTTCGT
CTTTTTGACGACGGTCATGGCAGTGACTTTCGGCTCAATCATGTACTACT
TTGAAGGAGGGGTTTATAGCGTCACTTTGGAGTTTCCATCTGGTGGTTTC
CTGAGACCCAATGCACGAAACACGGCCCTGGAACAATCGCCGTTTACGTC
CATTATAATGGGCATCTATTGGTATATCGTGAATACAACCACACTCGGCA
ATGCCGCCCTCTTCCCCACCACCACCGGCGGACGGATTGCCTCCTGTTTT
ATCGCGTACTTTGGCCTCCTATCCCTCGCCCTGCCCATCACCATCATCGG
CCAGAATTTCTCCCAGCAATACAACCTTGTCTACGCCGATCCCGACAGCC
AACCCCATCTCTTCTACCCCCCGACCCCTCGCACCCCCAGAACGCCGCGT
CGGAAGGGCGGAGCCCCCGGCTCTGCAGACGGCTTTCTTGGCCACTCCAT
TGTCGGTGGCGGGAAAGAAGACTTGAGTTATGTCTCCCCTGAGCAGGAAA
TCGAGGCATTGCGCGCAGAGTTCCAGCAGCAGGTCGACGGATTGCGAATG
CATATGCAGCAGCAAGGCTCCAAAGCCGCCTCTTCCGCCCCGTCGCAGCA
GGAGGTGGATTCGTTGAAGGCTTATGTGCAGCGAGAGATCAGCAGCATGA
GAACGGCGATGAATGGCGCGACCGACCGTGGACAGTTTCAACAACAGCCG
CAACAGCCTCAACAACAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGGG
ATTTAGAGAGGGTGGATATGGGAGGATGTCGTCGGAAGATGTGGATACTA
GATCGTTCCCGATGCCCGTGGGTCGGGAAACAGTGAGGGAGAATGTTTTC
AGGGAGCAAGGGAGGGAAACCAATTTCCGAGACAGAGAGAGCGCGGAGGC
GTTAAGGCAGAGGCAGAGGGAGGAGGAGGAGGAGAGAGAGAACCAGACGC
AGCGGTCGTTGAGGGAGGCGGAGATTAATAGTTTCAGGAATCAGATAACT
GAAGGTATTGGGAGGTTTAGTCCGCAGGCTGAGCTGGAGACGTTCCGAGG
GGGGTTGTATTAG
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Synonyms
Publications