NO07G02800.1, NO07G02800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02800.1
Unique NameNO07G02800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length911
Alignment locationchr7:797034..798183 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:797034..798183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02800.1 vs.
Match: CBN74764.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-15
Identity = 75/254 (29.53%), Postives = 113/254 (44.49%), Query Frame = 0 
Query:    6 PPPLP-HNSNFHQQPSDANIALFEACAIAKDVSHVDKLLASGASPNWYNYQEGGQTALHAAARVPSSSPSSAHATVIVQRLLAHGAVTNVLTLPDFNLPLHFAASAGNLATVKLLVEHDQKHTTPKTLSAAVASPFASLIKAPTIATCGVRQSNIFGNTPLHEACISGHEELITLLLANGADLRHMDQDGVGILHIAAMQGHREIVDHLLKEKMLGKAGW---TKDANGHSPMFYAKMKGFDEIEKMLSEAERD 256
            P  +P H    +Q P+  N  L+ A A + ++S +   LA+GA+ NWYN  E G TALH AA       S  H    V++LL +G+V +   L + N  LH A   G++ TVK+L+                             ++  V   N +GN P+H A + GH  ++ LLL +GA+ + M+  G  +LH  A        D       L +AG    +KD +G +P+      G  E+   L E   D
Sbjct:   17 PSQIPEHKLAENQLPTKKNRDLYGA-ATSGNLSELKVALAAGANSNWYNKSEDGATALHRAA-------SGGHVGC-VEQLLKNGSVIDERLLTNSNSALHLACGNGHMETVKVLLA----------------------------SSAAVNAGNSYGNAPIHAALMGGHRAVVELLLESGAEAQWMNNKGSSLLHFLAYSTAMPPADKKALALKLVQAGVNLDSKDEDGMTPLHVVGQSGDKEMATFLFENGAD 233
The following BLAST results are available for this feature:
BLAST of NO07G02800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74764.12.900e-1529.53conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02800NO07G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02800.1NO07G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02800.1.cds1NO07G02800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02800.1.cds2NO07G02800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02800.1 ID=NO07G02800.1|Name=NO07G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
GCCAAAACACAGGACACAAGCCCACGTCTCCATTACAAAGAGCTACTTTT
ACCACTTCAGACTTTGTTGGTCTTGATGAATCATCCTATTTCCACCATCA
GACTTTCCAAATGGCCATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCA
ATTTTCACCAACAGCCCAGCGACGCCAACATTGCCCTTTTCGAGGCATGT
GCCATAGCCAAGGATGTAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGC
CAGCCCTAATTGGTATAATTATCAGGAGGGAGGGCAGACGGCGTTGCATG
CCGCTGCGCGTGTTCCCTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTG
ATTGTGCAGCGCCTACTTGCACACGGTGCCGTGACCAACGTCCTGACCCT
GCCAGATTTTAACTTGCCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGG
CGACGGTAAAGCTGCTTGTTGAGCACGACCAGAAGCACACAACTCCCAAA
ACCCTTTCCGCGGCCGTTGCTTCACCATTCGCCTCTCTTATAAAGGCCCC
CACCATTGCCACATGTGGCGTCCGCCAGAGCAATATATTCGGTAATACAC
CCCTTCATGAGGCGTGCATTTCGGGGCACGAAGAGCTGATTACCCTCCTC
CTTGCCAACGGAGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTAT
CTTGCATATTGCTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTT
TGAAAGAGAAAATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGA
CATTCGCCCATGTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAA
GATGTTGTCGGAGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATG
TCGGTGCTTGA
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protein sequence of NO07G02800.1

>NO07G02800.1-protein ID=NO07G02800.1-protein|Name=NO07G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAMSSPPPLPHNSNFHQQPSDANIALFEACAIAKDVSHVDKLLASGASPN
WYNYQEGGQTALHAAARVPSSSPSSAHATVIVQRLLAHGAVTNVLTLPDF
NLPLHFAASAGNLATVKLLVEHDQKHTTPKTLSAAVASPFASLIKAPTIA
TCGVRQSNIFGNTPLHEACISGHEELITLLLANGADLRHMDQDGVGILHI
AAMQGHREIVDHLLKEKMLGKAGWTKDANGHSPMFYAKMKGFDEIEKMLS
EAERDEVKGERENVGA*
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mRNA from alignment at chr7:797034..798183+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02800.1 ID=NO07G02800.1|Name=NO07G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at chr7:797034..798183+ (Nannochloropsis oceanica)
GCCAAAACACAGGACACAAGCCCACGTCTCCATTACAAAGAGCTACTTTT
ACCACTTCAGACTTTGTTGGTCTTGATGAATCATCCTATTTCCACCATCA
GACTTTCCAAATGGCCATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCA
ATTTTCACCAACAGCCCAGCGACGCCAACATTGCCCTTTTCGAGGCATGT
GCCATAGCCAAGGATGTAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGC
CAGCCCTAATTGGTATAATTATCAGGAGGGAGGGCAGACGGCGTTGCATG
CCGCTGCGCGTGTTCCCTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTG
ATTGTGCAGCGCCTACTTGCACACGGTGCCGTGACCAACGTCCTGACCCT
GCCAGATTTTAACTTGCCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGG
CGACGGTAAAGCTGCTTGTTGAGCACGACCAGAAGCACACAACTCCCAAA
ACCCTTTCCGCGGCCGTTGCTTCACCATTCGCCTCTCTTATAAAGGCCCC
CACCATTGCCACATGTGGCGTCCGCCAGAGCAATATATTCGGTAATACAC
CCCTTCATGAGGCGTGCATTTCGGGGCACGAAGAGGTAGGATCGCTGGGA
AAGGAGGTCACATATAAATGATATTAATCATCTCTTCCACATCACCGCAC
TCACATTGCTTTTCTTCTTTCATTTTCTTCTCATTCACATGTGGTCCAAA
GTGCGCAAATTACATCCTATCCCAAGATAGGGCCACCGCCCGGCCCTCCC
TCGTCAACCTTTCCAACAAACGCGGCTCCACTCCACTCCTCTTCTCGCTT
TATGGCTCCCATCCCTCCCTCAAGCTGATTACCCTCCTCCTTGCCAACGG
AGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTATCTTGCATATTG
CTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTTTGAAAGAGAAA
ATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGACATTCGCCCAT
GTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAAGATGTTGTCGG
AGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATGTCGGTGCTTGA
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Coding sequence (CDS) from alignment at chr7:797034..798183+

>NO07G02800.1 ID=NO07G02800.1|Name=NO07G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr7:797034..798183+ (Nannochloropsis oceanica)
ATGGCCATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCAATTTTCACCA
ACAGCCCAGCGACGCCAACATTGCCCTTTTCGAGGCATGTGCCATAGCCA
AGGATGTAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGCCAGCCCTAAT
TGGTATAATTATCAGGAGGGAGGGCAGACGGCGTTGCATGCCGCTGCGCG
TGTTCCCTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTGATTGTGCAGC
GCCTACTTGCACACGGTGCCGTGACCAACGTCCTGACCCTGCCAGATTTT
AACTTGCCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGGCGACGGTAAA
GCTGCTTGTTGAGCACGACCAGAAGCACACAACTCCCAAAACCCTTTCCG
CGGCCGTTGCTTCACCATTCGCCTCTCTTATAAAGGCCCCCACCATTGCC
ACATGTGGCGTCCGCCAGAGCAATATATTCGGTAATACACCCCTTCATGA
GGCGTGCATTTCGGGGCACGAAGAGCTGATTACCCTCCTCCTTGCCAACG
GAGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTATCTTGCATATT
GCTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTTTGAAAGAGAA
AATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGACATTCGCCCA
TGTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAAGATGTTGTCG
GAGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATGTCGGTGCTTG
A
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Synonyms
Publications