NO07G02780.1, NO07G02780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02780.1
Unique NameNO07G02780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length652
Alignment locationchr7:795042..795951 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:795042..795951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02780.1 vs.
Match: OQR92312.1 (hypothetical protein ACHHYP_03820 [Achlya hypogyna])

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-9
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 0 
Query:    7 NLLMEPQNRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQ 97
            N   +  NR V  KL L+T+ MF +P+  +++     F++    R MWSGF ++A VNV+I +Y++ AFRED   EK +PVPAVG +  Q
Sbjct:    9 NAANKAHNRAVIAKLGLFTVLMFVLPIATYYLLHN-TFLATWENRTMWSGFGAIAMVNVVIFVYILEAFREDAATEK-EPVPAVGKFKKQ 96
The following BLAST results are available for this feature:
BLAST of NO07G02780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR92312.11.600e-942.22hypothetical protein ACHHYP_03820 [Achlya hypogyna... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02780NO07G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02780.1NO07G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02780.1.cds1NO07G02780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02780.1.cds2NO07G02780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02780.1.cds3NO07G02780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02780.1 ID=NO07G02780.1|Name=NO07G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=652bp
ACAGGCTCTGTCATTGGTCGTCATAGCATCACTGCTCTTCTCCAGCAGTG
GGAACGCGCGTCCCCTGTCAACGTCCACTGCTGCTCCCCTCTTGCCTTCC
ACCGCCCCACCTCCATCATCCATCGTCCCACGTACCAGTCCAACAATGGT
GCTGCAACTCGTCAACCTGCTGATGGAGCCTCAAAATAGGCACGTCGGAC
ACAAGCTCTTCCTGTATACCATGGCCATGTTTAGCGTTCCTGTCCTCGTC
TTTTTTATTTGTCGGGAATGGGTGTTTGTGTCGGATCCACGGCGAAGGGA
CATGTGGAGCGGTTTCGCCTCCGTCGCGTCCGTGAATGTCATCATAGCCC
TGTACGTGGTAATGGCCTTTCGAGAGGACAAAGACGAGGAGAAACGCCAG
CCTGTGCCTGCCGTTGGGGTATGGGCGATGCAGAGGACCAAGGAACGAAC
TGATTGAAGAATGAGGAGGTGGAGGTGGCAGGTTATAAAAAGATTGGTCC
AAATAAAGTACATAGACGCACGTGCTGCCAATTCGCGCCTGCGCCTAACC
CCCACAAGATATCAAGACATATGTACACCGGGGAAAAATGAAAGAACAAT
GTACCCATAAGTGCGGAAAATATATGTCTCGATAGAAACAAGCAGGTAGC
GG
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protein sequence of NO07G02780.1

>NO07G02780.1-protein ID=NO07G02780.1-protein|Name=NO07G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MVLQLVNLLMEPQNRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRR
RDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQRTKE
RTD*
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mRNA from alignment at chr7:795042..795951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02780.1 ID=NO07G02780.1|Name=NO07G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at chr7:795042..795951+ (Nannochloropsis oceanica)
ACAGGCTCTGTCATTGGTCGTCATAGCATCACTGCTCTTCTCCAGCAGTG
GGAACGCGCGTCCCCTGTCAACGTCCACTGCTGCTCCCCTCTTGCCTTCC
ACCGCCCCACCTCCATCATCCATCGTCCCACGTACCAGTCCAACAATGGT
GCTGCAACTCGTCAACCTGTGCGTACAGTTCCCTATGCACTATCTGGCAG
ATTTGCCCACTAATCTCTGCTTCATGGTCCATCTTGTTCACACCCCGCAC
CACTTTTCCCCTCGATGCAGGCTGATGGAGCCTCAAAATAGGCACGTCGG
ACACAAGCTCTTCCTGTATACCATGGCCATGTTTAGCGTTCCTGTCCTCG
TCTTTTTTATTTGTCGGGAATGGGTGTTTGTGTCGGATCCACGGCGAAGG
GACATGTGGAGGTAAGCTTCGGTGGAGAAAGAGGTGAGGTGTAATGCGTA
CGCGTGCAGGCCTAGGTGAGAGGGGACAGCATTGGGATCACAGAGCGCAC
CACCTACAAGAGATTCAATTAGAGCTTAACCATACTTTTGTATTTATTTC
TATCTCTATGTTTAAAGCGGTTTCGCCTCCGTCGCGTCCGTGAATGTCAT
CATAGCCCTGTACGTGGTAATGGCCTTTCGAGAGGACAAAGACGAGGAGA
AACGCCAGCCTGTGCCTGCCGTTGGGGTATGGGCGATGCAGAGGACCAAG
GAACGAACTGATTGAAGAATGAGGAGGTGGAGGTGGCAGGTTATAAAAAG
ATTGGTCCAAATAAAGTACATAGACGCACGTGCTGCCAATTCGCGCCTGC
GCCTAACCCCCACAAGATATCAAGACATATGTACACCGGGGAAAAATGAA
AGAACAATGTACCCATAAGTGCGGAAAATATATGTCTCGATAGAAACAAG
CAGGTAGCGG
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Coding sequence (CDS) from alignment at chr7:795042..795951+

>NO07G02780.1 ID=NO07G02780.1|Name=NO07G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at chr7:795042..795951+ (Nannochloropsis oceanica)
ATGGTGCTGCAACTCGTCAACCTGCTGATGGAGCCTCAAAATAGGCACGT
CGGACACAAGCTCTTCCTGTATACCATGGCCATGTTTAGCGTTCCTGTCC
TCGTCTTTTTTATTTGTCGGGAATGGGTGTTTGTGTCGGATCCACGGCGA
AGGGACATGTGGAGCGGTTTCGCCTCCGTCGCGTCCGTGAATGTCATCAT
AGCCCTGTACGTGGTAATGGCCTTTCGAGAGGACAAAGACGAGGAGAAAC
GCCAGCCTGTGCCTGCCGTTGGGGTATGGGCGATGCAGAGGACCAAGGAA
CGAACTGATTGA
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Synonyms
Publications