NO07G02770.1, NO07G02770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02770.1
Unique NameNO07G02770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr7:793080..795273 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:793080..795273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02770.1 vs.
Match: EWM27091.1 (orotidine-5-monophosphate decarboxylase and orotate phosphoribosyl [Nannochloropsis gaditana])

HSP 1 Score: 759.2 bits (1959), Expect = 8.700e-216
Identity = 403/527 (76.47%), Postives = 448/527 (85.01%), Query Frame = 0 
Query:   37 MSFFESLEARVRAVDSLLCVGLDPHTAQLPEATGAAAYTFCKRIIEATLPQAAAYKPNIAFFEALGKEGWQALLNVMKLIPAEVPVLLDAKRGDISTTAEAYATACLEGVGATGVTLHGYMGVDSVAPFMKDPRAGAFVLCKTSNPSSADFQTIPCS---------SPQQPWLLYEEVARRAGEWGSKYQERIGLVVGATDTEALQRVRAIVPNMWILAPGIGAQGGDLEAACSAGLSAEGSKLLLPISRGISKTTDPGEAAEAFRVAINAARK---GPILAAAAAASVSRNRSGLSSLKPYQSDFIRFALEREVLLLGSFTLKSGRVSPYFFNAGKFTSGLALKRLSHFYVQSLLENKLEFDVLFGPAYKGITLASAVAVALAETTGRDVPFAYDRKEAKDHGEGGRLVGADMRGKRVVIVDDVITAGTAIRESMELLASVKAKVVGVVLALDRQERGVESPLSAVQSVEQQFGLTVLSVVGLDALLAFFLEE---GEKGEGERGREGWEAIREYRIRYGVTLPQA 549
            MSFFE LEARV++VDSLLCVGLDPH AQL EATGAAAY FCKR+IEAT P AAAYKPNIAFFEALG EGWQALL V++ +P+++PV+LDAKRGDISTTA+AYATAC + VGATGVTLHGYMGVDSVAPFM+DP AGAF+LCKTSNPSSADFQTIPCS         S   PWLLYEEVARRAGEWG++YQ+RIGLVVGATD +AL+RVRAIVP+MWILAPGIGAQGGDL  AC+AGLS   SKLLLPISRGIS+  DP EAAEAFRVAIN ARK     +  +   + V   R G  +LK +QSDFIRFAL+ EVLLLGSFTLKSGRVSPYFFNAGKFTSGLALK+LSHFY ++LLE+ L FDVLFGPAYKGITLASAVAVAL E TGRDVPFAYDRKEAKDHGEGGRLVGA + GKRVVIVDDVITAGTAIRESM+LL SV+A+VVGV LALDRQERG +SPLSAVQSVEQQ+G+ VLSVVGL  LL FF+E+   G+ G+GE  +E  EAIREYR +YGV   QA
Sbjct:    3 MSFFECLEARVKSVDSLLCVGLDPHGAQLQEATGAAAYKFCKRLIEATAPYAAAYKPNIAFFEALGTEGWQALLEVVQSVPSDIPVILDAKRGDISTTADAYATACFKSVGATGVTLHGYMGVDSVAPFMRDPHAGAFILCKTSNPSSADFQTIPCSLSTIGSGCQSRVLPWLLYEEVARRAGEWGTQYQDRIGLVVGATDPDALKRVRAIVPDMWILAPGIGAQGGDLIGACAAGLSKGASKLLLPISRGISQARDPAEAAEAFRVAINVARKQARSQVDMSNVESLVEAPRGG--ALKSFQSDFIRFALDSEVLLLGSFTLKSGRVSPYFFNAGKFTSGLALKKLSHFYARTLLESGLVFDVLFGPAYKGITLASAVAVALGELTGRDVPFAYDRKEAKDHGEGGRLVGAALSGKRVVIVDDVITAGTAIRESMQLLTSVQAEVVGVALALDRQERGTDSPLSAVQSVEQQYGVQVLSVVGLRELLEFFMEKAGNGKAGDGE--KEALEAIREYRAQYGVAPLQA 525
The following BLAST results are available for this feature:
BLAST of NO07G02770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27091.18.700e-21676.47orotidine-5-monophosphate decarboxylase and orotat... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02770NO07G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02770.1NO07G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02770.1.cds1NO07G02770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02770.1.cds2NO07G02770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02770.1.cds3NO07G02770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02770.1 ID=NO07G02770.1|Name=NO07G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
ATGGACCATGAAGCAGAGATTAGTGGGCAAATCTGCCAGATAGTGCATAG
GGAACTGTACGCACAGGTTGACGAGTTGCAGCACCATTGTTGGACTGACG
ACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCCGGGTGAGGGCCGTT
GATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACCGCCCAGCTCCCAGA
AGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACGCATTATTGAGGCGA
CGTTACCACAAGCAGCGGCATACAAGCCCAACATTGCATTTTTCGAGGCC
TTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTCATGAAGCTCATTCC
TGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGGAGATATAAGCACGA
CGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCGTAGGCGCGACTGGT
GTAACCCTGCATGGGTACATGGGAGTCGATTCCGTGGCCCCCTTTATGAA
GGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGACTTCAAACCCTTCCT
CCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTCAACAACCCTGGTTA
CTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGGGGCTCTAAATACCA
AGAACGCATTGGTCTCGTAGTTGGTGCCACTGACACAGAAGCCTTGCAAC
GCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCGCTCCAGGAATCGGG
GCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCAGGTTTGTCGGCAGA
AGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAATTTCAAAGACGACGG
ATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCATCAATGCGGCACGA
AAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCTGTGAGCCGAAACCG
TAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGATTTCATCCGCTTTG
CCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCACTCTGAAATCAGGC
CGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTCACCTCGGGTCTAGC
CCTAAAAAGACTCAGCCATTTCTATGTACAATCGCTTCTGGAAAACAAGC
TCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAGGAATCACGCTTGCA
TCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGTAGAGACGTTCCCTT
TGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGAAGGGGGGAGGTTGG
TTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTGTCGATGACGTCATC
ACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTGTTGGCTTCGGTGAA
AGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAGGCAAGAGAGGGGGG
TGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGCAGCAGTTTGGATTG
ACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTGGCGTTTTTCCTGGA
GGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGAGGGGTGGGAAGCGA
TTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGCCACAGGCTTGACTG
TGAGACAGTAGTAATGGGAGGAAAGGGGGGATCCAATGGAGAGTGCAGTT
GGAAGAAATGGTCACCGTGAAGGTGACGACGTCGTCGGATAAAAGATGAA
GGAGAAGGTGTAGAGGAAGGCGAAGAAATGAAGGTAGAGGAAGGCGAAGA
AAGGAAGGAGGACGTATAAAGTCTGGCTAGT
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protein sequence of NO07G02770.1

>NO07G02770.1-protein ID=NO07G02770.1-protein|Name=NO07G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MDHEAEISGQICQIVHRELYAQVDELQHHCWTDDDPMSFFESLEARVRAV
DSLLCVGLDPHTAQLPEATGAAAYTFCKRIIEATLPQAAAYKPNIAFFEA
LGKEGWQALLNVMKLIPAEVPVLLDAKRGDISTTAEAYATACLEGVGATG
VTLHGYMGVDSVAPFMKDPRAGAFVLCKTSNPSSADFQTIPCSSPQQPWL
LYEEVARRAGEWGSKYQERIGLVVGATDTEALQRVRAIVPNMWILAPGIG
AQGGDLEAACSAGLSAEGSKLLLPISRGISKTTDPGEAAEAFRVAINAAR
KGPILAAAAAASVSRNRSGLSSLKPYQSDFIRFALEREVLLLGSFTLKSG
RVSPYFFNAGKFTSGLALKRLSHFYVQSLLENKLEFDVLFGPAYKGITLA
SAVAVALAETTGRDVPFAYDRKEAKDHGEGGRLVGADMRGKRVVIVDDVI
TAGTAIRESMELLASVKAKVVGVVLALDRQERGVESPLSAVQSVEQQFGL
TVLSVVGLDALLAFFLEEGEKGEGERGREGWEAIREYRIRYGVTLPQA*
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mRNA from alignment at chr7:793080..795273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02770.1 ID=NO07G02770.1|Name=NO07G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2194bp|location=Sequence derived from alignment at chr7:793080..795273- (Nannochloropsis oceanica)
ATGGACCATGAAGCAGAGATTAGTGGGCAAATCTGCCAGATAGTGCATAG
GGAACTGTACGCACAGGTTGACGAGTTGCAGCACCATTGTTGGACTGGTA
CGTGGGACGATGGATGATGGAGGTGGGGCGGTGGAAGGCAAGAGGGGAGC
AGCAGTGGACGTTGACAGGGGACGCGCGTTCCCACTGCTGGAGAAGAGCA
GTGATGCTATGACGACCAATGACAGAGCCTGTAGCACATAGTGGTTATTG
TGGTGGGCATTGTTAGTAAGTGTCGTTGTGGTTGGCTATAATGCACTTGC
CGCGAAGAGGCCGCAGCATGCATCATCGCCAGGAAATCAGCCACCAGCTT
CATAGCAACTCATTCATGCCCTACACGACCCCACAGACGACGACCCGATG
TCCTTCTTTGAGAGCCTGGAGGCCCGGGTGAGGGCCGTTGATTCCCTGCT
GTGCGTTGGGCTGGACCCGCACACCGCCCAGGTACGTAACACGCTTCCCT
CTGACCTCCCACTCAATCCTCTCACACCTCTCCAACTCATACCACCCACC
CATAGCTCCCAGAAGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACGC
ATTATTGAGGCGACGTTACCACAAGCAGCGGCATACAAGCCCAACATTGC
ATTTTTCGAGGCCTTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTCA
TGAAGCTCATTCCTGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGGA
GATATAAGCACGACGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCGT
AGGCGCGACTGGTGTAACCCTGCATGGGTACATGGGAGTCGATTCCGTGG
CCCCCTTTATGAAGGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGACT
TCAAACCCTTCCTCCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTCA
ACAACCCTGGTTACTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGGG
GCTCTAAATACCAAGAACGCATTGGTCTCGTAGTTGGTGCCACTGACACA
GAAGCCTTGCAACGCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCGC
TCCAGGAATCGGGGCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCAG
GTTTGTCGGCAGAAGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAATT
TCAAAGACGACGGATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCAT
CAATGCGGCACGAAAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCTG
TGAGCCGAAACCGTAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGAT
TTCATCCGCTTTGCCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCAC
TCTGAAATCAGGCCGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTCA
CCTCGGGTCTAGCCCTAAAAAGACTCAGCCATTTCTATGTACAATCGCTT
CTGGAAAACAAGCTCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAGG
AATCACGCTTGCATCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGTA
GAGACGTTCCCTTTGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGAA
GGGGGGAGGTTGGTTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTGT
CGATGACGTCATCACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTGT
TGGCTTCGGTGAAAGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAGG
CAAGAGAGGGGGGTGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGCA
GCAGTTTGGATTGACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTGG
CGTTTTTCCTGGAGGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGAG
GGGTGGGAAGCGATTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGCC
ACAGGCTTGACTGTGAGACAGTAGTAATGGGAGGAAAGGGGGGATCCAAT
GGAGAGTGCAGTTGGAAGAAATGGTCACCGTGAAGGTGACGACGTCGTCG
GATAAAAGATGAAGGAGAAGGTGTAGAGGAAGGCGAAGAAATGAAGGTAG
AGGAAGGCGAAGAAAGGAAGGAGGACGTATAAAGTCTGGCTAGT
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Coding sequence (CDS) from alignment at chr7:793080..795273-

>NO07G02770.1 ID=NO07G02770.1|Name=NO07G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr7:793080..795273- (Nannochloropsis oceanica)
ATGGACCATGAAGCAGAGATTAGTGGGCAAATCTGCCAGATAGTGCATAG
GGAACTGTACGCACAGGTTGACGAGTTGCAGCACCATTGTTGGACTGACG
ACGACCCGATGTCCTTCTTTGAGAGCCTGGAGGCCCGGGTGAGGGCCGTT
GATTCCCTGCTGTGCGTTGGGCTGGACCCGCACACCGCCCAGCTCCCAGA
AGCCACAGGTGCCGCGGCCTATACCTTCTGCAAACGCATTATTGAGGCGA
CGTTACCACAAGCAGCGGCATACAAGCCCAACATTGCATTTTTCGAGGCC
TTAGGAAAGGAGGGATGGCAGGCATTGCTGAACGTCATGAAGCTCATTCC
TGCTGAAGTCCCCGTCCTCCTTGATGCTAAACGCGGAGATATAAGCACGA
CGGCTGAAGCGTATGCAACAGCATGTTTGGAAGGCGTAGGCGCGACTGGT
GTAACCCTGCATGGGTACATGGGAGTCGATTCCGTGGCCCCCTTTATGAA
GGACCCGCGTGCCGGCGCTTTTGTCTTGTGCAAGACTTCAAACCCTTCCT
CCGCCGACTTTCAAACAATACCCTGCTCCTCTCCTCAACAACCCTGGTTA
CTCTACGAAGAAGTCGCGCGTCGCGCAGGCGAATGGGGCTCTAAATACCA
AGAACGCATTGGTCTCGTAGTTGGTGCCACTGACACAGAAGCCTTGCAAC
GCGTCCGTGCCATAGTCCCAAACATGTGGATCCTCGCTCCAGGAATCGGG
GCCCAAGGCGGTGACTTGGAAGCGGCCTGCTCTGCAGGTTTGTCGGCAGA
AGGGAGTAAATTGTTACTTCCCATTTCAAGAGGAATTTCAAAGACGACGG
ATCCTGGAGAGGCAGCAGAAGCGTTTCGGGTTGCCATCAATGCGGCACGA
AAGGGACCTATTCTAGCAGCAGCTGCGGCAGCATCTGTGAGCCGAAACCG
TAGTGGCTTGTCCTCACTCAAGCCGTACCAATCGGATTTCATCCGCTTTG
CCCTCGAACGGGAGGTGTTGCTGCTGGGGTCCTTCACTCTGAAATCAGGC
CGTGTCTCCCCCTACTTCTTCAATGCAGGCAAGTTCACCTCGGGTCTAGC
CCTAAAAAGACTCAGCCATTTCTATGTACAATCGCTTCTGGAAAACAAGC
TCGAATTCGACGTCCTTTTTGGTCCGGCCTATAAAGGAATCACGCTTGCA
TCTGCTGTTGCCGTTGCCCTGGCAGAAACTACGGGTAGAGACGTTCCCTT
TGCGTATGACCGGAAGGAGGCCAAGGACCACGGGGAAGGGGGGAGGTTGG
TTGGCGCGGATATGAGGGGAAAGAGAGTGGTGATTGTCGATGACGTCATC
ACGGCGGGCACTGCGATTCGCGAGAGTATGGAGCTGTTGGCTTCGGTGAA
AGCGAAGGTGGTGGGAGTGGTGCTTGCGTTGGACAGGCAAGAGAGGGGGG
TGGAGTCGCCCTTGTCGGCTGTGCAAAGCGTGGAGCAGCAGTTTGGATTG
ACGGTGCTAAGTGTGGTTGGGTTGGATGCGCTACTGGCGTTTTTCCTGGA
GGAGGGGGAGAAGGGAGAGGGAGAGAGGGGGAGGGAGGGGTGGGAAGCGA
TTAGAGAGTACCGAATCCGGTATGGAGTGACCTTGCCACAGGCTTGA
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Synonyms
Publications