NO07G02690.1, NO07G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02690.1
Unique NameNO07G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1902
Alignment locationchr7:776156..778796 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:776156..778796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02690.1 vs.
Match: EWM27116.1 (Protein of unknown function DUF760 [Nannochloropsis gaditana])

HSP 1 Score: 495.0 bits (1273), Expect = 3.000e-136
Identity = 316/528 (59.85%), Postives = 372/528 (70.45%), Query Frame = 0 
Query:   12 RRNREFRLLSCVAVAGCCCLVPGTFAFLPASPVLSSTSSPPSVLGVGIHRPVRASTLKVFTRKLSGGLDPPFHFGGNGNNNDDGEGDNGSDQHRNPRQPRKGQQSSQQQQQQQQQQQQQQQQQQQQQHQQQASSFRPPATASGGNMSMGAGSPSKLQGFMEGSQQLVPQIGGMPFMTGNNYVDLLVTMTPTEMITNFKAAAPIRVQEAVKRTVLRCIGSIQDSLVEDAHRTTGLIFAHLVYKAQVTGYMLFNAEVKVQGLLAA--AAQMQALPVMEQQHQQDHGV--------GAGNLLEGGKGESLRGVGGGLLTSDEDDVMRLDGVVTVTSSDGTRVQVQAQDYVDALKKEAASLKAELVRMEGEKRQMVSRDLLSYISDLSSRQSGELTGGMTQDVVEAMKMLTNRVLASIQDRPIVEKESMELDSAALAQIIMWGLVTGYSLRELERAWNYGQPASPSLLRPTSPQYPTSRPRSRRPPPPPPPPRGV-GEGEEIVHQEGDREGEGGVVVEGEGEGQEEEEGVGG 529
            +R R   +   +A+ GC   +P   AFL AS   S        +GV   RP R    K F R LSGGLDPPFHFG      D+G+G NG +  R P +P            Q  QQQ QQ++QQQ + ++ ASS RPP +ASGG  S  A  P KL+GFMEGSQ+LVPQ GGMP+M+GNNYVDLLVT++PTEMI+NFKAAAP RVQEAV+RTVLRCIGSI+DSLVED+HR TGLIFAHL+YKAQVTGYMLFNAEVKVQG++    AA   +LP  +     +  V        GA +LLE GK   L   GG LL  + +    LDG VTVT+SDGTRV+V AQDYV AL++EAASLK ELVRMEGE+RQ+++RDLL+YISDLS+RQSGELT GMT+DVVEAMK+LT+RVL SIQ++PIVE ESME+DS ALAQ+IMWGLVTGYSLRELERAWNYGQPA+PSL+RP SP  P++RPR RRPPPPPPPPRG  G G       GDR   GG      G G    EG GG
Sbjct:    9 KRRRRLTVGLSIALVGCWWRLPEAQAFLAASRCPSGAP-----MGVTGGRPSRGRVTKTFARNLSGGLDPPFHFG------DNGDGKNGDEDGRQPSKP-----------SQSFQQQHQQRRQQQPRQEEPASSLRPP-SASGGTKSGNASGPLKLEGFMEGSQKLVPQTGGMPYMSGNNYVDLLVTLSPTEMISNFKAAAPPRVQEAVRRTVLRCIGSIRDSLVEDSHRCTGLIFAHLLYKAQVTGYMLFNAEVKVQGIVGTGLAASAPSLPPQQSHRPSEQAVPVEGEDEEGAKHLLEDGKSVRL---GGALLGGEGETDAWLDGTVTVTTSDGTRVRVDAQDYVQALRQEAASLKGELVRMEGEQRQVLARDLLAYISDLSARQSGELTEGMTRDVVEAMKVLTSRVLVSIQEQPIVETESMEVDSTALAQLIMWGLVTGYSLRELERAWNYGQPATPSLMRPPSPSSPSTRPRGRRPPPPPPPPRGSRGRG-------GDRPPRGGPAGPPGGGG----EGGGG 499
The following BLAST results are available for this feature:
BLAST of NO07G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27116.13.000e-13659.85Protein of unknown function DUF760 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02690NO07G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02690.1NO07G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02690.1.cds1NO07G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02690.1.cds2NO07G02690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02690.1.cds3NO07G02690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02690.1.cds4NO07G02690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02690.1.cds5NO07G02690.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02690.1 ID=NO07G02690.1|Name=NO07G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
ATGACTTTCCCACCCACCCCGTCGTCGTCGTCAAGACGAAATCGGGAATT
CAGGCTGCTCTCATGTGTTGCTGTCGCGGGATGTTGCTGCCTCGTACCAG
GAACCTTCGCCTTCCTCCCGGCAAGCCCTGTCCTTTCCTCCACTTCCTCC
CCGCCGTCCGTGCTTGGAGTGGGAATCCACCGCCCGGTGCGGGCTAGTAC
GCTCAAGGTCTTCACCCGCAAGTTGAGCGGAGGCTTGGACCCTCCCTTCC
ACTTTGGTGGAAATGGCAACAACAACGATGACGGTGAAGGTGACAACGGA
AGCGACCAACATCGGAACCCACGACAGCCTCGCAAAGGCCAGCAATCATC
TCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGC
AGCAACAGCAGCAGCACCAGCAGCAAGCCTCTTCGTTCAGGCCCCCCGCG
ACAGCGTCCGGAGGCAACATGTCGATGGGAGCTGGTAGTCCGTCAAAGCT
GCAAGGCTTTATGGAGGGAAGCCAACAGCTCGTCCCCCAAATCGGCGGCA
TGCCATTCATGACCGGCAACAACTACGTCGATCTCCTTGTTACCATGACG
CCCACCGAGATGATAACCAACTTCAAGGCGGCTGCCCCCATCCGTGTTCA
AGAAGCGGTTAAACGCACCGTGCTTCGCTGCATCGGCTCCATCCAGGATT
CCCTCGTTGAAGACGCCCATCGAACCACGGGGTTGATTTTCGCGCACCTG
GTTTACAAGGCGCAAGTGACGGGTTACATGCTTTTTAATGCAGAAGTGAA
GGTCCAGGGTCTGTTGGCCGCTGCGGCCCAGATGCAGGCGTTGCCTGTCA
TGGAGCAGCAGCACCAGCAGGACCACGGGGTAGGGGCGGGTAATTTGCTG
GAAGGGGGAAAAGGGGAGAGTCTGAGGGGAGTGGGTGGGGGGTTGCTGAC
GAGCGATGAGGATGATGTGATGCGGCTGGATGGGGTGGTGACTGTCACGA
GCAGTGACGGGACTCGAGTGCAAGTCCAAGCGCAAGATTATGTGGACGCG
CTCAAAAAGGAAGCGGCCTCGCTCAAGGCCGAGCTGGTGCGGATGGAGGG
AGAGAAGCGTCAGATGGTCTCGAGGGACCTGCTTTCTTATATCTCGGACT
TGTCGAGCCGGCAGAGTGGGGAATTGACAGGGGGGATGACGCAAGACGTG
GTGGAGGCGATGAAGATGCTGACGAATCGGGTGTTGGCTTCTATTCAGGA
CAGGCCGATCGTGGAGAAAGAGAGCATGGAACTCGATTCGGCCGCCTTAG
CCCAAATCATAATGTGGGGCCTCGTCACCGGCTACTCTCTCCGCGAACTT
GAACGTGCATGGAACTACGGGCAACCCGCCAGTCCTTCCCTTCTTCGTCC
TACCTCTCCCCAATATCCCACGAGCCGACCTCGCAGTCGAAGGCCACCAC
CTCCTCCCCCCCCTCCGAGGGGGGTAGGGGAAGGGGAGGAGATCGTCCAC
CAAGAGGGGGACCGGGAGGGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGG
GGAAGGCCAGGAGGAGGAGGAGGGGGTGGGTGGTCTGGATGCTAATGTAA
AGGAAGTTGATGCAGCAATTTGATTAGTTTATTTTTTACTGGGCTGAGGA
TGATAACGAGGTGGAGGGAAGTGATTGGGATGGGGAAAGAGACTCGCAAA
GCTCATATATAGCGCGATTTGGGAAGAAAATGGGAGCGAGGAAGGAAGAG
AAGCGGAGACAAAAGGCCGCGTCTCATACATCACAGGGTAAGAAAAATGC
GTGGAAGGGTGAAAGGGATTGAAGCGGAAGCTGAGGCCATGTACACAAGT
AAGACATTCACATAACAAGAAAGGAAATTACTAGTTCTTTTGCCGTTCCT
AC
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protein sequence of NO07G02690.1

>NO07G02690.1-protein ID=NO07G02690.1-protein|Name=NO07G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MTFPPTPSSSSRRNREFRLLSCVAVAGCCCLVPGTFAFLPASPVLSSTSS
PPSVLGVGIHRPVRASTLKVFTRKLSGGLDPPFHFGGNGNNNDDGEGDNG
SDQHRNPRQPRKGQQSSQQQQQQQQQQQQQQQQQQQQQHQQQASSFRPPA
TASGGNMSMGAGSPSKLQGFMEGSQQLVPQIGGMPFMTGNNYVDLLVTMT
PTEMITNFKAAAPIRVQEAVKRTVLRCIGSIQDSLVEDAHRTTGLIFAHL
VYKAQVTGYMLFNAEVKVQGLLAAAAQMQALPVMEQQHQQDHGVGAGNLL
EGGKGESLRGVGGGLLTSDEDDVMRLDGVVTVTSSDGTRVQVQAQDYVDA
LKKEAASLKAELVRMEGEKRQMVSRDLLSYISDLSSRQSGELTGGMTQDV
VEAMKMLTNRVLASIQDRPIVEKESMELDSAALAQIIMWGLVTGYSLREL
ERAWNYGQPASPSLLRPTSPQYPTSRPRSRRPPPPPPPPRGVGEGEEIVH
QEGDREGEGGVVVEGEGEGQEEEEGVGGLDANVKEVDAAI*
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mRNA from alignment at chr7:776156..778796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02690.1 ID=NO07G02690.1|Name=NO07G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2641bp|location=Sequence derived from alignment at chr7:776156..778796+ (Nannochloropsis oceanica)
ATGACTTTCCCACCCACCCCGTCGTCGTCGTCAAGACGAAATCGGGAATT
CAGGCTGCTCTCATGTGTTGCTGTCGCGGGATGTTGCTGCCTCGTACCAG
GAACCTTCGCCTTCCTCCCGGCAAGCCCTGTCCTTTCCTCCACTTCCTCC
CCGCCGTCCGTGCTTGGAGTGGGAATCCACCGCCCGGTGCGGGCTAGTAC
GCTCAAGGTCTTCACCCGCAAGTTGAGCGGAGGCTTGGACCCTCCCTTCC
ACTTTGGTACATGTACAGACAGAAACGAAAGAGATGGAGAGCGGTCTTCC
TTCTAGAAAATGGGTACTTGGGCAATGTCAGCATCTCACCCATCTACCAC
ATCACACACACGCATATGTAGGTGGAAATGGCAACAACAACGATGACGGT
GAAGGTGACAACGGAAGCGACCAACATCGGAACCCACGACAGCCTCGCAA
AGGCCAGCAATCATCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAGCAGCAGCAACAGCAGCAGCACCAGCAGCAAGCCTCTTCG
TTCAGGCCCCCCGCGACAGCGTCCGGAGGCAACATGTCGATGGGAGCTGG
TAGTCCGTCAAAGCTGCAAGGCTTTATGGAGGGGTAGGTGTAAAGGGAGG
AATGGAGAGAGGGAAGGCTGCGATCGTGAATGTGAGATTGTTTTGCTTCA
TCAACCGTGCGGTGAAGAATATCAGTTCAGAAATATTGAAATACGAACGC
ATATATCCCTAATCGCTCACATTTCCTGAATTTTCTCCACTGCCCCATCT
GTAGAAGCCAACAGCTCGTCCCCCAAATCGGCGGCATGCCATTCATGACC
GGCAACAACTACGTCGATCTCCTTGTTACCATGACGCCCACCGAGATGAT
AACCAACTTCAAGGCGGCTGCCCCCATCCGTGTTCAAGAAGCGGTTAAAC
GCACCGTGCTTCGCTGCATCGGCTCCATCCAGGATTCCCTCGTTGAAGAC
GCCCATCGAACCACGGGGTTGATTTTCGCGCACCTGGTTTACAAGGCGCA
AGTGACGGGTTACATGCTTTTTAATGCAGAAGTGAAGGTCCAGGGTCTGT
TGGCCGCTGCGGCCCAGATGCAGGCGTTGCCTGTCATGGAGCAGCAGCAC
CAGCAGGACCACGGGGTAGGGGCGGGTAATTTGCTGGAAGGGGGAAAAGG
GGAGAGTCTGAGGGGAGTGGGTGGGGGGTTGCTGACGAGCGATGAGGATG
ATGTGATGCGGCTGGATGGGGTGGTGACTGTCACGAGCAGTGTAAGTGAC
ATGGATGGCGAACGCTTTTCTTTCCTTCCCTCCCTTTCTCTTCTCCCTTT
CTCCCTCTTTCCCTTTTCGTATCTCTTTGTTTGTCTCCCATTCTCCTTAT
ATCCAGACCTTGCACTATTAGTATCCACCGTGCACGCACATATATATGTA
TAATTATACTCACCCAGCCCATCAGCAGCATTTATATCGCCTTCTCCAAC
CTCCCCCCCCCTCTTCCCCCCCCAAATCTTTCTTCCCTTTGTAACTAGGA
CGGGACTCGAGTGCAAGTCCAAGCGCAAGATTATGTGGACGCGCTCAAAA
AGGAAGCGGCCTCGCTCAAGGCCGAGCTGGTGCGGATGGAGGGAGAGAAG
CGTCAGATGGTCTCGAGGGACCTGCTTTCTTATATCTCGGACTTGTCGAG
CCGGCAGAGTGGGGAATTGACAGGGGGGATGACGCAAGACGTGGTGGAGG
CGATGAAGATGCTGACGAATCGGGTGTTGGCTTCTATTCAGGACAGGCCG
ATCGTGGAGAAAGGTGGGGCTGGAGGGAGGGAGGGAGAAAGGGGAGGGGG
GAATACTGAATTGTGTCGGGAATTTCGCTTGTCTCGTGATGATTAATATT
AATTATCATCACCTGCCATGTAATTGTTTTCACTTCTCCATTTTTAGATT
GACCACTGAAATGCTGATCTCATTCCATCCCTCCCTCCTTACCTCTCGTC
CTCTTACAGAGAGCATGGAACTCGATTCGGCCGCCTTAGCCCAAATCATA
ATGTGGGGCCTCGTCACCGGCTACTCTCTCCGCGAACTTGAACGTGCATG
GAACTACGGGCAACCCGCCAGTCCTTCCCTTCTTCGTCCTACCTCTCCCC
AATATCCCACGAGCCGACCTCGCAGTCGAAGGCCACCACCTCCTCCCCCC
CCTCCGAGGGGGGTAGGGGAAGGGGAGGAGATCGTCCACCAAGAGGGGGA
CCGGGAGGGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGGGGAAGGCCAGG
AGGAGGAGGAGGGGGTGGGTGGTCTGGATGCTAATGTAAAGGAAGTTGAT
GCAGCAATTTGATTAGTTTATTTTTTACTGGGCTGAGGATGATAACGAGG
TGGAGGGAAGTGATTGGGATGGGGAAAGAGACTCGCAAAGCTCATATATA
GCGCGATTTGGGAAGAAAATGGGAGCGAGGAAGGAAGAGAAGCGGAGACA
AAAGGCCGCGTCTCATACATCACAGGGTAAGAAAAATGCGTGGAAGGGTG
AAAGGGATTGAAGCGGAAGCTGAGGCCATGTACACAAGTAAGACATTCAC
ATAACAAGAAAGGAAATTACTAGTTCTTTTGCCGTTCCTAC
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Coding sequence (CDS) from alignment at chr7:776156..778796+

>NO07G02690.1 ID=NO07G02690.1|Name=NO07G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr7:776156..778796+ (Nannochloropsis oceanica)
ATGACTTTCCCACCCACCCCGTCGTCGTCGTCAAGACGAAATCGGGAATT
CAGGCTGCTCTCATGTGTTGCTGTCGCGGGATGTTGCTGCCTCGTACCAG
GAACCTTCGCCTTCCTCCCGGCAAGCCCTGTCCTTTCCTCCACTTCCTCC
CCGCCGTCCGTGCTTGGAGTGGGAATCCACCGCCCGGTGCGGGCTAGTAC
GCTCAAGGTCTTCACCCGCAAGTTGAGCGGAGGCTTGGACCCTCCCTTCC
ACTTTGGTGGAAATGGCAACAACAACGATGACGGTGAAGGTGACAACGGA
AGCGACCAACATCGGAACCCACGACAGCCTCGCAAAGGCCAGCAATCATC
TCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGC
AGCAACAGCAGCAGCACCAGCAGCAAGCCTCTTCGTTCAGGCCCCCCGCG
ACAGCGTCCGGAGGCAACATGTCGATGGGAGCTGGTAGTCCGTCAAAGCT
GCAAGGCTTTATGGAGGGAAGCCAACAGCTCGTCCCCCAAATCGGCGGCA
TGCCATTCATGACCGGCAACAACTACGTCGATCTCCTTGTTACCATGACG
CCCACCGAGATGATAACCAACTTCAAGGCGGCTGCCCCCATCCGTGTTCA
AGAAGCGGTTAAACGCACCGTGCTTCGCTGCATCGGCTCCATCCAGGATT
CCCTCGTTGAAGACGCCCATCGAACCACGGGGTTGATTTTCGCGCACCTG
GTTTACAAGGCGCAAGTGACGGGTTACATGCTTTTTAATGCAGAAGTGAA
GGTCCAGGGTCTGTTGGCCGCTGCGGCCCAGATGCAGGCGTTGCCTGTCA
TGGAGCAGCAGCACCAGCAGGACCACGGGGTAGGGGCGGGTAATTTGCTG
GAAGGGGGAAAAGGGGAGAGTCTGAGGGGAGTGGGTGGGGGGTTGCTGAC
GAGCGATGAGGATGATGTGATGCGGCTGGATGGGGTGGTGACTGTCACGA
GCAGTGACGGGACTCGAGTGCAAGTCCAAGCGCAAGATTATGTGGACGCG
CTCAAAAAGGAAGCGGCCTCGCTCAAGGCCGAGCTGGTGCGGATGGAGGG
AGAGAAGCGTCAGATGGTCTCGAGGGACCTGCTTTCTTATATCTCGGACT
TGTCGAGCCGGCAGAGTGGGGAATTGACAGGGGGGATGACGCAAGACGTG
GTGGAGGCGATGAAGATGCTGACGAATCGGGTGTTGGCTTCTATTCAGGA
CAGGCCGATCGTGGAGAAAGAGAGCATGGAACTCGATTCGGCCGCCTTAG
CCCAAATCATAATGTGGGGCCTCGTCACCGGCTACTCTCTCCGCGAACTT
GAACGTGCATGGAACTACGGGCAACCCGCCAGTCCTTCCCTTCTTCGTCC
TACCTCTCCCCAATATCCCACGAGCCGACCTCGCAGTCGAAGGCCACCAC
CTCCTCCCCCCCCTCCGAGGGGGGTAGGGGAAGGGGAGGAGATCGTCCAC
CAAGAGGGGGACCGGGAGGGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGG
GGAAGGCCAGGAGGAGGAGGAGGGGGTGGGTGGTCTGGATGCTAATGTAA
AGGAAGTTGATGCAGCAATTTGA
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Synonyms
Publications