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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:757656..759899 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02630.1 vs.
Match: EWM27070.1 (rna polymerase-associated protein ctr9 [Nannochloropsis gaditana]) HSP 1 Score: 1069.7 bits (2765), Expect = 4.100e-309 Identity = 540/747 (72.29%), Postives = 624/747 (83.53%), Query Frame = 0
Query: 1 MQAPQHDGVIIPIRGSQEAECVHLLPEDLPDMNDSAGVDAILQILQAEFALPNVWADLAEAYYRKGRPDIFREVLRLLLEGLLEDGVKEEMEGHTEAQKRQFAMGLLRVYNMLGAQATLEAIKCKHAEDEQRRMELWDTAKRDFDLADTVVQYAEPTLLNKGWMALNLSAGATWKHANYLFNNAITEARNRGGHNLLAMLGLAIHAYHMKTPEELRRARKLFGEVIRRYPGCPAEVRVGFGLCCYRLGETDRAKAAFQRALTLNRGNRLALLALARAELSDAKLEEYPTTLDRVVKMQTAAYVQGDKDPLAMVSLATYYLHKWFPLPADALKVADGSEKVTVGASEGANGRLVDFERGDLIRVGPVFTARVLEVVEKEVDGEEKSGPAVVTTTLTLDRPFHGRGVATEAETEDGQPPHYPRLALYRKDFKRAMSLLDSVLGRPEELCPNDLRGEALYLKARVVHQLDDFESARTYYQQACQICPDLAPAQYGYAQMLAAQSRTLTLRDRKQEAAARLREAVLALNRVLDRVPNDPEALTLLGLLLAEQHQDAPDKSEALEKLRRAVDLRPDVKETRVALGQVYQREPGPDLKEALRCQLKAEDLILRHQEPVPAALLSNIGALFHVKGEQRAARGYYRRALEAFATTGGTGLGDLEAQYLPEEQQIRHESNAVFWRWEDVNGMTVELETGSRRAAVVGNGADGLSGLKPGEHLKFRLGQGRREGFVSEVAAEGEEGGRRTGRAGICC 748
M P+HDG+IIPIRGSQ AECVHLL EDLPD++DSA DAILQILQAEFALP+VWAD+AEAYY KGRPD+FR+VL LL +GL E GV+EEMEG+TEAQKR+F GL+RVYNMLGA AT EAIK K AEDE+RRME+WD AK + D+ADTVVQYAEPTLLNKGWMA+NLSAG+TWKHA YLFNNAITEA NRGG NL+AMLGLAIHA+H+ TP ELRRARKL GEVIRR+P CPAEVRVGFGLCCYRLGE DRAKAAF+RAL L+RGNR A+LALARAEL+DA+ +EY TLDRVV+MQTAAYVQ +KDPLA+VSLATYYLHKWFP+ A A++V +GSEKV + A+ GA R ERGDLIR+GPVFT RVL+VV +V G+ G T+LTLDR FHGRG+A EA EDG PH+P L++YRKDF++AM+L+D L RPE+L P +LR EA+++KA+VVHQLDDFESA YY+ AC++CP LAPAQYG+AQMLAAQSRTL L+DRK+EA ARL EAV ALNRVLD VP+DP+ LTLLGLLLAEQHQ A DK EAL+KLRRAV+LRPDVKET VALGQV+QR PG D KEALRC L+AE LIL+ QE VPA LLSN+GAL HVKGEQ AR YYRRALEA+A+TGG+GLG+LEAQYLP EQ I+H NAVFWRWEDV GMTV LE GSR AAVVG+G +GL+GL+PG+H++F LG G RE FVS V E E G +G C
Sbjct: 1 MGTPEHDGIIIPIRGSQRAECVHLLAEDLPDVSDSAEFDAILQILQAEFALPDVWADVAEAYYCKGRPDLFRQVLHLLRDGLKEAGVQEEMEGNTEAQKREFRRGLVRVYNMLGALATQEAIKFKRAEDEERRMEMWDVAKHNLDVADTVVQYAEPTLLNKGWMAMNLSAGSTWKHAKYLFNNAITEANNRGGQNLMAMLGLAIHAFHVNTPAELRRARKLLGEVIRRHPQCPAEVRVGFGLCCYRLGEVDRAKAAFKRALVLSRGNRFAMLALARAELADAEPDEYLDTLDRVVRMQTAAYVQDEKDPLALVSLATYYLHKWFPVGAQAVRVVEGSEKVELEAARGAGDRPHRLERGDLIRIGPVFTCRVLDVV--DVGGKGAEG----RTSLTLDRAFHGRGLAPEAVQEDGHAPHFPTLSIYRKDFRQAMALVDRALARPEDLAPAELRAEAIFVKAQVVHQLDDFESALIYYRDACELCPSLAPAQYGHAQMLAAQSRTLALKDRKEEAVARLGEAVAALNRVLDMVPHDPDTLTLLGLLLAEQHQLAADKHEALDKLRRAVELRPDVKETWVALGQVHQRAPGADPKEALRCLLEAERLILQRQEVVPAPLLSNVGALLHVKGEQGGAREYYRRALEAYASTGGSGLGELEAQYLPSEQPIQHPRNAVFWRWEDVPGMTVRLEEGSRAAAVVGSGPEGLTGLQPGDHVRFALGPGPREAFVSVVVDEKAEDDMMGGASGDLC 741
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02630.1 ID=NO07G02630.1|Name=NO07G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp
ATGCAAGCCCCTCAGCACGACGGTGTCATCATCCCCATCCGGGGCTCACA
GGAAGCGGAATGTGTCCATTTGTTGCCGGAGGACCTGCCGGATATGAATG
ACTCGGCGGGCGTGGACGCCATCCTCCAGATTTTGCAAGCAGAGTTTGCT
TTGCCCAACGTGTGGGCGGACTTGGCCGAGGCCTACTACCGCAAGGGACG
TCCGGACATTTTTCGAGAGGTTTTGAGATTGTTGTTGGAAGGTTTACTGG
AGGACGGGGTAAAGGAGGAGATGGAGGGGCACACGGAGGCGCAGAAACGA
CAATTTGCCATGGGGTTGCTCCGCGTGTACAATATGCTGGGGGCGCAAGC
GACCTTGGAAGCCATCAAATGCAAGCATGCAGAGGACGAACAACGGCGGA
TGGAGCTGTGGGACACTGCTAAGCGGGATTTCGACCTGGCTGACACTGTG
GTGCAGTATGCAGAGCCCACCCTTCTGAACAAGGGATGGATGGCCTTGAA
CCTAAGTGCGGGCGCCACGTGGAAGCACGCTAACTACCTATTTAACAATG
CCATCACTGAAGCCCGGAACCGCGGTGGGCACAATTTGCTGGCAATGCTA
GGGCTGGCTATACACGCGTATCATATGAAGACGCCTGAGGAGCTGCGCCG
GGCCCGCAAGCTGTTTGGGGAGGTTATTCGTCGTTACCCCGGTTGCCCCG
CGGAAGTCCGGGTAGGGTTTGGTCTATGCTGTTATCGCCTGGGGGAGACT
GATCGAGCCAAGGCTGCGTTCCAACGGGCTTTGACTTTGAATCGTGGGAA
TCGGTTGGCGTTGCTGGCGCTTGCGAGGGCCGAGTTGTCGGATGCCAAGC
TCGAGGAATACCCAACGACGTTGGATCGTGTGGTGAAAATGCAGACGGCG
GCGTACGTGCAAGGAGATAAGGACCCGTTGGCAATGGTAAGTTTGGCTAC
TTATTATTTGCATAAGTGGTTTCCGTTGCCCGCGGATGCATTGAAGGTGG
CGGATGGAAGTGAGAAGGTCACGGTGGGGGCGTCGGAAGGCGCGAATGGT
CGACTGGTGGACTTCGAGAGGGGCGACTTAATCAGGGTGGGGCCTGTGTT
TACTGCCCGGGTGTTGGAGGTAGTAGAGAAGGAGGTGGATGGTGAGGAGA
AGAGCGGGCCGGCGGTGGTGACAACGACCTTAACGTTGGACAGACCTTTT
CACGGACGTGGGGTCGCGACTGAGGCAGAGACGGAAGATGGGCAACCACC
GCATTACCCGCGGTTGGCCCTGTACCGCAAGGATTTTAAGCGAGCTATGT
CCCTCCTTGACAGTGTCCTGGGTCGGCCAGAAGAGCTTTGTCCCAATGAC
TTGAGGGGGGAAGCTTTGTATCTCAAAGCGCGTGTGGTGCATCAATTGGA
TGACTTTGAGTCCGCGCGTACTTACTACCAACAAGCCTGCCAAATCTGTC
CTGACCTCGCGCCCGCTCAATATGGATATGCTCAAATGCTGGCAGCACAA
AGCCGGACCCTTACCCTGCGAGATCGGAAGCAAGAGGCTGCTGCTCGTTT
AAGGGAAGCAGTACTAGCGCTGAATAGAGTTTTGGATAGAGTGCCCAACG
ACCCGGAGGCTTTGACGTTGCTCGGGCTGCTCTTAGCTGAGCAACACCAA
GATGCCCCCGATAAGAGCGAAGCGCTTGAAAAGCTACGGCGTGCTGTGGA
CCTGCGGCCGGACGTGAAGGAGACACGGGTGGCTTTGGGGCAAGTGTATC
AGCGTGAGCCTGGGCCTGATTTAAAGGAAGCATTGCGGTGTCAATTAAAA
GCGGAGGATCTGATTTTGCGGCACCAAGAGCCAGTTCCTGCTGCGCTGTT
AAGTAATATTGGTGCATTGTTTCATGTGAAAGGGGAGCAAAGGGCGGCAA
GGGGGTACTATCGCCGGGCGCTTGAGGCGTTTGCGACGACGGGGGGGACT
GGGCTGGGGGATTTGGAAGCTCAATATCTGCCGGAGGAGCAGCAAATTAG
GCATGAGAGTAATGCGGTCTTCTGGCGGTGGGAAGACGTGAACGGGATGA
CGGTGGAGTTGGAAACGGGAAGTAGGAGGGCAGCGGTTGTGGGAAATGGG
GCAGATGGCTTAAGTGGTCTGAAGCCGGGGGAGCACTTGAAATTCAGGTT
GGGCCAGGGAAGGAGGGAGGGATTTGTATCGGAAGTGGCAGCTGAGGGGG
AAGAGGGGGGGAGGAGGACAGGACGAGCGGGGATTTGCTGTTGA back to topprotein sequence of NO07G02630.1 >NO07G02630.1-protein ID=NO07G02630.1-protein|Name=NO07G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp
MQAPQHDGVIIPIRGSQEAECVHLLPEDLPDMNDSAGVDAILQILQAEFA
LPNVWADLAEAYYRKGRPDIFREVLRLLLEGLLEDGVKEEMEGHTEAQKR
QFAMGLLRVYNMLGAQATLEAIKCKHAEDEQRRMELWDTAKRDFDLADTV
VQYAEPTLLNKGWMALNLSAGATWKHANYLFNNAITEARNRGGHNLLAML
GLAIHAYHMKTPEELRRARKLFGEVIRRYPGCPAEVRVGFGLCCYRLGET
DRAKAAFQRALTLNRGNRLALLALARAELSDAKLEEYPTTLDRVVKMQTA
AYVQGDKDPLAMVSLATYYLHKWFPLPADALKVADGSEKVTVGASEGANG
RLVDFERGDLIRVGPVFTARVLEVVEKEVDGEEKSGPAVVTTTLTLDRPF
HGRGVATEAETEDGQPPHYPRLALYRKDFKRAMSLLDSVLGRPEELCPND
LRGEALYLKARVVHQLDDFESARTYYQQACQICPDLAPAQYGYAQMLAAQ
SRTLTLRDRKQEAAARLREAVLALNRVLDRVPNDPEALTLLGLLLAEQHQ
DAPDKSEALEKLRRAVDLRPDVKETRVALGQVYQREPGPDLKEALRCQLK
AEDLILRHQEPVPAALLSNIGALFHVKGEQRAARGYYRRALEAFATTGGT
GLGDLEAQYLPEEQQIRHESNAVFWRWEDVNGMTVELETGSRRAAVVGNG
ADGLSGLKPGEHLKFRLGQGRREGFVSEVAAEGEEGGRRTGRAGICC* back to topmRNA from alignment at chr7:757656..759899- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02630.1 ID=NO07G02630.1|Name=NO07G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp|location=Sequence derived from alignment at chr7:757656..759899- (Nannochloropsis oceanica)
ATGCAAGCCCCTCAGCACGACGGTGTCATCATCCCCATCCGGGGCTCACA
GGAAGCGGAATGTGTCCATTTGTTGCCGGAGGACCTGCCGGATATGAATG
ACTCGGCGGGCGTGGACGCCATCCTCCAGATTTTGCAAGCAGAGTTTGCT
TTGCCCAACGTGTGGGCGGACTTGGCCGAGGCCTACTACCGCAAGGGACG
TCCGGACATTTTTCGAGAGGTTTTGAGATTGTTGTTGGAAGGTTTACTGG
AGGACGGGGTAAAGGAGGAGATGGAGGGGCACACGGAGGCGCAGAAACGA
CAATTTGCCATGGGGTTGCTCCGCGTGTACAATATGCTGGGGGCGCAAGC
GACCTTGGAAGCCATCAAATGCAAGCATGCAGAGGACGAACAACGGCGGA
TGGAGCTGTGGGACACTGCTAAGCGGGATTTCGACCTGGCTGACACTGTG
GTGCAGTATGCAGAGCCCACCCTTCTGAACAAGGGATGGATGGCCTTGAA
CCTAAGTGCGGGCGCCACGTGGAAGCACGCTAACTACCTATTTAACAATG
CCATCACTGAAGCCCGGAACCGCGGTGGGCACAATTTGCTGGCAATGCTA
GGGCTGGCTATACACGCGTATCATATGAAGACGCCTGAGGAGCTGCGCCG
GGCCCGCAAGCTGTTTGGGGAGGTTATTCGTCGTTACCCCGGTTGCCCCG
CGGAAGTCCGGGTAGGGTTTGGTCTATGCTGTTATCGCCTGGGGGAGACT
GATCGAGCCAAGGCTGCGTTCCAACGGGCTTTGACTTTGAATCGTGGGAA
TCGGTTGGCGTTGCTGGCGCTTGCGAGGGCCGAGTTGTCGGATGCCAAGC
TCGAGGAATACCCAACGACGTTGGATCGTGTGGTGAAAATGCAGACGGCG
GCGTACGTGCAAGGAGATAAGGACCCGTTGGCAATGGTAAGTTTGGCTAC
TTATTATTTGCATAAGTGGTTTCCGTTGCCCGCGGATGCATTGAAGGTGG
CGGATGGAAGTGAGAAGGTCACGGTGGGGGCGTCGGAAGGCGCGAATGGT
CGACTGGTGGACTTCGAGAGGGGCGACTTAATCAGGGTGGGGCCTGTGTT
TACTGCCCGGGTGTTGGAGGTAGTAGAGAAGGAGGTGGATGGTGAGGAGA
AGAGCGGGCCGGCGGTGGTGACAACGACCTTAACGTTGGACAGACCTTTT
CACGGACGTGGGGTCGCGACTGAGGCAGAGACGGAAGATGGGCAACCACC
GCATTACCCGCGGTTGGCCCTGTACCGCAAGGATTTTAAGCGAGCTATGT
CCCTCCTTGACAGTGTCCTGGGTCGGCCAGAAGAGCTTTGTCCCAATGAC
TTGAGGGGGGAAGCTTTGTATCTCAAAGCGCGTGTGGTGCATCAATTGGA
TGACTTTGAGTCCGCGCGTACTTACTACCAACAAGCCTGCCAAATCTGTC
CTGACCTCGCGCCCGCTCAATATGGATATGCTCAAATGCTGGCAGCACAA
AGCCGGACCCTTACCCTGCGAGATCGGAAGCAAGAGGCTGCTGCTCGTTT
AAGGGAAGCAGTACTAGCGCTGAATAGAGTTTTGGATAGAGTGCCCAACG
ACCCGGAGGCTTTGACGTTGCTCGGGCTGCTCTTAGCTGAGCAACACCAA
GATGCCCCCGATAAGAGCGAAGCGCTTGAAAAGCTACGGCGTGCTGTGGA
CCTGCGGCCGGACGTGAAGGAGACACGGGTGGCTTTGGGGCAAGTGTATC
AGCGTGAGCCTGGGCCTGATTTAAAGGAAGCATTGCGGTGTCAATTAAAA
GCGGAGGATCTGATTTTGCGGCACCAAGAGCCAGTTCCTGCTGCGCTGTT
AAGTAATATTGGTGCATTGTTTCATGTGAAAGGGGAGCAAAGGGCGGCAA
GGGGGTACTATCGCCGGGCGCTTGAGGCGTTTGCGACGACGGGGGGGACT
GGGCTGGGGGATTTGGAAGCTCAATATCTGCCGGAGGAGCAGCAAATTAG
GCATGAGAGTAATGCGGTCTTCTGGCGGTGGGAAGACGTGAACGGGATGA
CGGTGGAGTTGGAAACGGGAAGTAGGAGGGCAGCGGTTGTGGGAAATGGG
GCAGATGGCTTAAGTGGTCTGAAGCCGGGGGAGCACTTGAAATTCAGGTT
GGGCCAGGGAAGGAGGGAGGGATTTGTATCGGAAGTGGCAGCTGAGGGGG
AAGAGGGGGGGAGGAGGACAGGACGAGCGGGGATTTGCTGTTGA back to topCoding sequence (CDS) from alignment at chr7:757656..759899- >NO07G02630.1 ID=NO07G02630.1|Name=NO07G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at chr7:757656..759899- (Nannochloropsis oceanica)
ATGCAAGCCCCTCAGCACGACGGTGTCATCATCCCCATCCGGGGCTCACA
GGAAGCGGAATGTGTCCATTTGTTGCCGGAGGACCTGCCGGATATGAATG
ACTCGGCGGGCGTGGACGCCATCCTCCAGATTTTGCAAGCAGAGTTTGCT
TTGCCCAACGTGTGGGCGGACTTGGCCGAGGCCTACTACCGCAAGGGACG
TCCGGACATTTTTCGAGAGGTTTTGAGATTGTTGTTGGAAGGTTTACTGG
AGGACGGGGTAAAGGAGGAGATGGAGGGGCACACGGAGGCGCAGAAACGA
CAATTTGCCATGGGGTTGCTCCGCGTGTACAATATGCTGGGGGCGCAAGC
GACCTTGGAAGCCATCAAATGCAAGCATGCAGAGGACGAACAACGGCGGA
TGGAGCTGTGGGACACTGCTAAGCGGGATTTCGACCTGGCTGACACTGTG
GTGCAGTATGCAGAGCCCACCCTTCTGAACAAGGGATGGATGGCCTTGAA
CCTAAGTGCGGGCGCCACGTGGAAGCACGCTAACTACCTATTTAACAATG
CCATCACTGAAGCCCGGAACCGCGGTGGGCACAATTTGCTGGCAATGCTA
GGGCTGGCTATACACGCGTATCATATGAAGACGCCTGAGGAGCTGCGCCG
GGCCCGCAAGCTGTTTGGGGAGGTTATTCGTCGTTACCCCGGTTGCCCCG
CGGAAGTCCGGGTAGGGTTTGGTCTATGCTGTTATCGCCTGGGGGAGACT
GATCGAGCCAAGGCTGCGTTCCAACGGGCTTTGACTTTGAATCGTGGGAA
TCGGTTGGCGTTGCTGGCGCTTGCGAGGGCCGAGTTGTCGGATGCCAAGC
TCGAGGAATACCCAACGACGTTGGATCGTGTGGTGAAAATGCAGACGGCG
GCGTACGTGCAAGGAGATAAGGACCCGTTGGCAATGGTAAGTTTGGCTAC
TTATTATTTGCATAAGTGGTTTCCGTTGCCCGCGGATGCATTGAAGGTGG
CGGATGGAAGTGAGAAGGTCACGGTGGGGGCGTCGGAAGGCGCGAATGGT
CGACTGGTGGACTTCGAGAGGGGCGACTTAATCAGGGTGGGGCCTGTGTT
TACTGCCCGGGTGTTGGAGGTAGTAGAGAAGGAGGTGGATGGTGAGGAGA
AGAGCGGGCCGGCGGTGGTGACAACGACCTTAACGTTGGACAGACCTTTT
CACGGACGTGGGGTCGCGACTGAGGCAGAGACGGAAGATGGGCAACCACC
GCATTACCCGCGGTTGGCCCTGTACCGCAAGGATTTTAAGCGAGCTATGT
CCCTCCTTGACAGTGTCCTGGGTCGGCCAGAAGAGCTTTGTCCCAATGAC
TTGAGGGGGGAAGCTTTGTATCTCAAAGCGCGTGTGGTGCATCAATTGGA
TGACTTTGAGTCCGCGCGTACTTACTACCAACAAGCCTGCCAAATCTGTC
CTGACCTCGCGCCCGCTCAATATGGATATGCTCAAATGCTGGCAGCACAA
AGCCGGACCCTTACCCTGCGAGATCGGAAGCAAGAGGCTGCTGCTCGTTT
AAGGGAAGCAGTACTAGCGCTGAATAGAGTTTTGGATAGAGTGCCCAACG
ACCCGGAGGCTTTGACGTTGCTCGGGCTGCTCTTAGCTGAGCAACACCAA
GATGCCCCCGATAAGAGCGAAGCGCTTGAAAAGCTACGGCGTGCTGTGGA
CCTGCGGCCGGACGTGAAGGAGACACGGGTGGCTTTGGGGCAAGTGTATC
AGCGTGAGCCTGGGCCTGATTTAAAGGAAGCATTGCGGTGTCAATTAAAA
GCGGAGGATCTGATTTTGCGGCACCAAGAGCCAGTTCCTGCTGCGCTGTT
AAGTAATATTGGTGCATTGTTTCATGTGAAAGGGGAGCAAAGGGCGGCAA
GGGGGTACTATCGCCGGGCGCTTGAGGCGTTTGCGACGACGGGGGGGACT
GGGCTGGGGGATTTGGAAGCTCAATATCTGCCGGAGGAGCAGCAAATTAG
GCATGAGAGTAATGCGGTCTTCTGGCGGTGGGAAGACGTGAACGGGATGA
CGGTGGAGTTGGAAACGGGAAGTAGGAGGGCAGCGGTTGTGGGAAATGGG
GCAGATGGCTTAAGTGGTCTGAAGCCGGGGGAGCACTTGAAATTCAGGTT
GGGCCAGGGAAGGAGGGAGGGATTTGTATCGGAAGTGGCAGCTGAGGGGG
AAGAGGGGGGGAGGAGGACAGGACGAGCGGGGATTTGCTGTTGA back to top
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