NO07G02580.1, NO07G02580.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO07G02580.1 vs.
Match: EWM27115.1 (actin-related protein 10 [Nannochloropsis gaditana]) HSP 1 Score: 466.8 bits (1200), Expect = 6.700e-128 Identity = 247/422 (58.53%), Postives = 307/422 (72.75%), Query Frame = 0 Query: 1 MGKETVVLDLGSALLKCGFAGESAPRHLLPSPLDGWSRQATMQAWGREEWVQVLGPLVVRLLVHHLYVRPRDRKVIICEPLAGPTAFREALAHVLFHWLKVPALLVVPSLTLPLYTAGADGGLVVDIGFRECHVLAVTFGIPLLHTYTAAGVGAATVLERAQELL------RKEKG--TGGEKDDLPLATLQDVVTRACFVPSRETNERRVTKSIAYDEGSISLTFSPELRSSLAEVLFDDNADDGASLPVAVLECLKKCPRDVRRIVAGHVLVTGGVAMLPGLCRRLAEEVKHQAKVKTKYQELRPLMLRQLEKN-------PLPHS----SPPNSS--CPFNFSGLCVIRDSALLSPRNVLTWVGGSILGVLVETAPHDSSPFVSRESYLAAAVDKQGREKEEGRGGWSCFAPVLSEWLS 402 M K+TVVLDLGSA++KCGFAGES+PRHLLPSPLD WSRQA + WG EEW Q LGPL+VRLLVH L+VRP + KV+ICEPLAG T FREALA+VLF WL+VPA+++ PSL +PLYTAGA+ GLVVD+GFRE HVLAV FG PLLHTY G+GA T+L+RA+ELL +KE G +G D LPL LQD+V RACFV +E + + + IAY+E LT +PELR+++AE LF ++ DDG SLP+AVLECL++CPRDVRR++A HVLV+GGVAMLPG C RLAEEV+ +A+V+ +YQEL PL+L + P H+ PP SS P + S LC++ +ALL+PRNVL WVGGSI VL ET P D+SPF+ R SY+ AV +GR ++ G PVL E LS Sbjct: 1 MVKDTVVLDLGSAIIKCGFAGESSPRHLLPSPLDDWSRQAASRGWGSEEWTQSLGPLLVRLLVHCLHVRPSENKVLICEPLAGSTTFREALAYVLFQWLRVPAIVMAPSLEMPLYTAGAETGLVVDVGFRESHVLAVVFGRPLLHTYAVVGMGALTLLDRARELLESAATAKKEGGCLSGQRGDRLPLELLQDIVMRACFVVGKE-DFQVDAEPIAYEEKGFKLTLTPELRTTVAEGLFAESVDDGESLPIAVLECLRRCPRDVRRLLASHVLVSGGVAMLPGFCPRLAEEVQQRARVRVRYQELCPLLLGHQGTSRAHEALAPSAHAPSIPPPPTSSRASPPSPSALCLVAGAALLAPRNVLAWVGGSIYAVLAETLPADASPFLFRGSYM-TAVSTRGRSSQDSGEGQGGRVPVLQEGLS 420 The following BLAST results are available for this feature:
BLAST of NO07G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02580.1 ID=NO07G02580.1|Name=NO07G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bpback to top protein sequence of NO07G02580.1 >NO07G02580.1-protein ID=NO07G02580.1-protein|Name=NO07G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bpback to top mRNA from alignment at chr7:748294..749654+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO07G02580.1 ID=NO07G02580.1|Name=NO07G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp|location=Sequence derived from alignment at chr7:748294..749654+ (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr7:748294..749654+ >NO07G02580.1 ID=NO07G02580.1|Name=NO07G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr7:748294..749654+ (Nannochloropsis oceanica)back to top Synonyms
Publications
|