NO07G02510.1, NO07G02510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02510.1
Unique NameNO07G02510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr7:726772..728435 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:726772..728435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02510.1 vs.
Match: XP_005855788.1 (hypothetical protein NGA_2083600 [Nannochloropsis gaditana CCMP526]; EKU20574.1 hypothetical protein NGA_2083600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 466.8 bits (1200), Expect = 8.100e-128
Identity = 260/471 (55.20%), Postives = 320/471 (67.94%), Query Frame = 0 
Query:   25 LLACSCLIFCSTMARPSAFLLSLPSRSHRPLLARLFASSVPNKSERLKLNIAIVGGGLSGLSTAWHLAGRVQRLTIYDSMAPGQASASAVAGGLLHPLTPKNRIIWSGLEGFEATLRLVEASKAALLNAGDEAAARRLHSSPGTILRPALIPQHVLNYQAAAAKLPEWLKWLEGEEWQCKANNPGHGLLLRNSIVLSMPDYLRGLWLSLQ-QTHGNTTMLTWEQCTFSNAQAIKHKKKNAGAAAYDVIVLASGAGICSFPALKHLPIELVTGRTLLVDQEEEDKEGREESAAGTSLGSALLCGEYVVPGVDLRRGEDWTKAERRVLRCGSTKEYVKDPWG-----QVAKVKGGEEKE----EKGEEKMRALREKAERIYPPLKRRPAAYRITTGTRVATPRSDLGRVPILGRVSLRGKEGGKEEGEEVETWLYTGLGGRGLIHHAFLGAKLAEAILMGDETLLPFQVRAPL 486
            L+A   L +C       + LL     S    L++   SS P  S    L +A+VGGGL+GLSTAWHL G V++++I+D   PGQA ASAVAGGLLHPLTPKNR++W GL GFEAT RLV +SK AL N GD A A RL S+PG ILRPAL  QHV+++QAAA +LP WLKWL GEEW+ K   PGHGLLLR S +LSMPDYLRGLWLS Q +   ++T LTWE   F+ A  +K        A YDV+VLASGAGI +FP L+HLP+E V GRTLLV  E +      E  +  SL  ALLCGEYVVPGVD     D    ERRVLRCGST+EY++D W       V K+ G   +E    EK + ++ +LR KAE IYPPL++ P AYR+T+GTRVAT RS+LG++PI+GR+    ++    EG + ETWL+TGLGGRG++HH FLG  LA+AIL GDET LP +VRAPL
Sbjct:    9 LIATLFLFYCFKPDMAHSLLLHGLRGSLPVCLSKSLLSSKPEPSN---LKVAVVGGGLAGLSTAWHLTGLVKQVSIFDPRPPGQAEASAVAGGLLHPLTPKNRLLWCGLRGFEATSRLVVSSKTALSNYGDTAGASRLQSAPGAILRPALTSQHVIDFQAAAKRLPNWLKWLNGEEWEQKVGVPGHGLLLRQSAILSMPDYLRGLWLSSQARAERSSTALTWESSLFT-ADCVKQS-----GAKYDVVVLASGAGIRAFPELEHLPVEFVRGRTLLVADESKGGVEPSEQESAPSLQCALLCGEYVVPGVDTEMCSDAEGKERRVLRCGSTREYLRDSWHVQDGIGVGKMGGRRTEEWFQSEKNDGEIASLRRKAESIYPPLRQGPEAYRVTSGTRVATRRSNLGKLPIVGRL----EQTKVAEGIKAETWLFTGLGGRGVVHHGFLGECLAQAILTGDETHLPSEVRAPL 466
The following BLAST results are available for this feature:
BLAST of NO07G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855788.18.100e-12855.20hypothetical protein NGA_2083600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02510NO07G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02510.1NO07G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02510.1.cds1NO07G02510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02510.1 ID=NO07G02510.1|Name=NO07G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
AAAACATTCCCACTTCCTCCATCCCTCCCTTCCACCAACCAACATGCACA
CATCCACATCATCGCAGGAACACGGCATGCCAGCGGGCGGTGTGAGGGTC
TCGGTTGCGGTCCCTCTGCTCGCATGCTCCTGCCTCATTTTTTGCAGTAC
AATGGCGCGGCCCTCAGCCTTCCTTCTAAGCCTCCCGTCTCGTTCACACC
GCCCCCTCCTTGCTCGTCTTTTCGCCTCGTCAGTGCCAAACAAATCAGAA
CGGCTGAAGTTAAATATAGCAATTGTTGGTGGCGGTTTGTCTGGCCTGTC
GACAGCTTGGCATCTGGCAGGCCGTGTTCAACGCCTTACCATCTATGACA
GCATGGCACCAGGGCAGGCCTCGGCCTCGGCCGTTGCGGGCGGCTTACTC
CACCCACTCACGCCCAAGAACCGCATAATTTGGTCAGGACTGGAAGGATT
CGAAGCCACTCTCCGCCTCGTGGAGGCAAGCAAGGCAGCGCTCTTGAATG
CAGGAGATGAAGCTGCCGCCCGTCGGCTGCACTCATCACCGGGCACCATT
CTTCGTCCAGCATTGATTCCACAACACGTCCTCAACTACCAGGCAGCCGC
CGCCAAGCTCCCGGAATGGCTAAAATGGCTGGAGGGAGAGGAATGGCAAT
GTAAAGCCAACAATCCGGGGCATGGATTGCTGTTGCGGAATAGTATTGTG
TTGTCCATGCCTGACTACTTGCGAGGCCTCTGGCTGTCACTTCAACAAAC
ACACGGCAACACCACCATGTTGACATGGGAACAGTGCACCTTTTCCAATG
CTCAGGCTATCAAACATAAAAAAAAAAATGCAGGAGCTGCAGCGTACGAT
GTAATCGTCCTAGCCTCAGGGGCCGGCATCTGCTCTTTCCCCGCACTGAA
GCATCTACCCATTGAGCTGGTCACAGGACGCACTTTACTGGTGGATCAAG
AGGAAGAAGATAAGGAAGGGAGGGAAGAGAGCGCGGCGGGGACCTCATTG
GGCTCAGCATTGCTCTGCGGCGAATATGTAGTGCCGGGGGTGGACTTGAG
GAGGGGCGAAGACTGGACGAAGGCAGAGAGGAGAGTGCTGAGGTGTGGTT
CGACAAAGGAATACGTGAAAGATCCTTGGGGACAAGTGGCCAAAGTGAAA
GGCGGGGAGGAGAAAGAGGAAAAGGGCGAGGAGAAGATGAGGGCTTTGCG
AGAGAAAGCGGAGAGGATCTACCCTCCTTTGAAAAGGAGACCTGCCGCGT
ACCGTATCACGACTGGTACTCGCGTAGCCACGCCAAGAAGTGATCTTGGC
AGGGTTCCTATACTCGGTCGTGTTTCTTTGAGAGGAAAGGAGGGAGGAAA
GGAGGAAGGGGAGGAGGTGGAGACGTGGTTGTACACCGGGTTGGGTGGGA
GGGGCTTGATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGAGGCTATC
TTGATGGGGGATGAGACATTACTGCCCTTCCAGGTACGGGCACCCCTTGT
CAAGCAGAGGGAAAAAAGATTTTGGTGAAGGTATGAGTGGTCGTAGGAAA
ATCATGAGAGAAATACAGAATCTTAGTCGTGGTAGGAGTGCAAGGCATTG
GCACTGTAAGTAATGCATGTCAGTTCATCGTAAAATAGAAAAAAGAAAAG
CACACAAACGCACA
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protein sequence of NO07G02510.1

>NO07G02510.1-protein ID=NO07G02510.1-protein|Name=NO07G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MHTSTSSQEHGMPAGGVRVSVAVPLLACSCLIFCSTMARPSAFLLSLPSR
SHRPLLARLFASSVPNKSERLKLNIAIVGGGLSGLSTAWHLAGRVQRLTI
YDSMAPGQASASAVAGGLLHPLTPKNRIIWSGLEGFEATLRLVEASKAAL
LNAGDEAAARRLHSSPGTILRPALIPQHVLNYQAAAAKLPEWLKWLEGEE
WQCKANNPGHGLLLRNSIVLSMPDYLRGLWLSLQQTHGNTTMLTWEQCTF
SNAQAIKHKKKNAGAAAYDVIVLASGAGICSFPALKHLPIELVTGRTLLV
DQEEEDKEGREESAAGTSLGSALLCGEYVVPGVDLRRGEDWTKAERRVLR
CGSTKEYVKDPWGQVAKVKGGEEKEEKGEEKMRALREKAERIYPPLKRRP
AAYRITTGTRVATPRSDLGRVPILGRVSLRGKEGGKEEGEEVETWLYTGL
GGRGLIHHAFLGAKLAEAILMGDETLLPFQVRAPLVKQREKRFW*
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mRNA from alignment at chr7:726772..728435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02510.1 ID=NO07G02510.1|Name=NO07G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr7:726772..728435+ (Nannochloropsis oceanica)
AAAACATTCCCACTTCCTCCATCCCTCCCTTCCACCAACCAACATGCACA
CATCCACATCATCGCAGGAACACGGCATGCCAGCGGGCGGTGTGAGGGTC
TCGGTTGCGGTCCCTCTGCTCGCATGCTCCTGCCTCATTTTTTGCAGTAC
AATGGCGCGGCCCTCAGCCTTCCTTCTAAGCCTCCCGTCTCGTTCACACC
GCCCCCTCCTTGCTCGTCTTTTCGCCTCGTCAGTGCCAAACAAATCAGAA
CGGCTGAAGTTAAATATAGCAATTGTTGGTGGCGGTTTGTCTGGCCTGTC
GACAGCTTGGCATCTGGCAGGCCGTGTTCAACGCCTTACCATCTATGACA
GCATGGCACCAGGGCAGGCCTCGGCCTCGGCCGTTGCGGGCGGCTTACTC
CACCCACTCACGCCCAAGAACCGCATAATTTGGTCAGGACTGGAAGGATT
CGAAGCCACTCTCCGCCTCGTGGAGGCAAGCAAGGCAGCGCTCTTGAATG
CAGGAGATGAAGCTGCCGCCCGTCGGCTGCACTCATCACCGGGCACCATT
CTTCGTCCAGCATTGATTCCACAACACGTCCTCAACTACCAGGCAGCCGC
CGCCAAGCTCCCGGAATGGCTAAAATGGCTGGAGGGAGAGGAATGGCAAT
GTAAAGCCAACAATCCGGGGCATGGATTGCTGTTGCGGAATAGTATTGTG
TTGTCCATGCCTGACTACTTGCGAGGCCTCTGGCTGTCACTTCAACAAAC
ACACGGCAACACCACCATGTTGACATGGGAACAGTGCACCTTTTCCAATG
CTCAGGCTATCAAACATAAAAAAAAAAATGCAGGAGCTGCAGCGTACGAT
GTAATCGTCCTAGCCTCAGGGGCCGGCATCTGCTCTTTCCCCGCACTGAA
GCATCTACCCATTGAGCTGGTCACAGGACGCACTTTACTGGTGGATCAAG
AGGAAGAAGATAAGGAAGGGAGGGAAGAGAGCGCGGCGGGGACCTCATTG
GGCTCAGCATTGCTCTGCGGCGAATATGTAGTGCCGGGGGTGGACTTGAG
GAGGGGCGAAGACTGGACGAAGGCAGAGAGGAGAGTGCTGAGGTGTGGTT
CGACAAAGGAATACGTGAAAGATCCTTGGGGACAAGTGGCCAAAGTGAAA
GGCGGGGAGGAGAAAGAGGAAAAGGGCGAGGAGAAGATGAGGGCTTTGCG
AGAGAAAGCGGAGAGGATCTACCCTCCTTTGAAAAGGAGACCTGCCGCGT
ACCGTATCACGACTGGTACTCGCGTAGCCACGCCAAGAAGTGATCTTGGC
AGGGTTCCTATACTCGGTCGTGTTTCTTTGAGAGGAAAGGAGGGAGGAAA
GGAGGAAGGGGAGGAGGTGGAGACGTGGTTGTACACCGGGTTGGGTGGGA
GGGGCTTGATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGAGGCTATC
TTGATGGGGGATGAGACATTACTGCCCTTCCAGGTACGGGCACCCCTTGT
CAAGCAGAGGGAAAAAAGATTTTGGTGAAGGTATGAGTGGTCGTAGGAAA
ATCATGAGAGAAATACAGAATCTTAGTCGTGGTAGGAGTGCAAGGCATTG
GCACTGTAAGTAATGCATGTCAGTTCATCGTAAAATAGAAAAAAGAAAAG
CACACAAACGCACA
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Coding sequence (CDS) from alignment at chr7:726772..728435+

>NO07G02510.1 ID=NO07G02510.1|Name=NO07G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr7:726772..728435+ (Nannochloropsis oceanica)
ATGCACACATCCACATCATCGCAGGAACACGGCATGCCAGCGGGCGGTGT
GAGGGTCTCGGTTGCGGTCCCTCTGCTCGCATGCTCCTGCCTCATTTTTT
GCAGTACAATGGCGCGGCCCTCAGCCTTCCTTCTAAGCCTCCCGTCTCGT
TCACACCGCCCCCTCCTTGCTCGTCTTTTCGCCTCGTCAGTGCCAAACAA
ATCAGAACGGCTGAAGTTAAATATAGCAATTGTTGGTGGCGGTTTGTCTG
GCCTGTCGACAGCTTGGCATCTGGCAGGCCGTGTTCAACGCCTTACCATC
TATGACAGCATGGCACCAGGGCAGGCCTCGGCCTCGGCCGTTGCGGGCGG
CTTACTCCACCCACTCACGCCCAAGAACCGCATAATTTGGTCAGGACTGG
AAGGATTCGAAGCCACTCTCCGCCTCGTGGAGGCAAGCAAGGCAGCGCTC
TTGAATGCAGGAGATGAAGCTGCCGCCCGTCGGCTGCACTCATCACCGGG
CACCATTCTTCGTCCAGCATTGATTCCACAACACGTCCTCAACTACCAGG
CAGCCGCCGCCAAGCTCCCGGAATGGCTAAAATGGCTGGAGGGAGAGGAA
TGGCAATGTAAAGCCAACAATCCGGGGCATGGATTGCTGTTGCGGAATAG
TATTGTGTTGTCCATGCCTGACTACTTGCGAGGCCTCTGGCTGTCACTTC
AACAAACACACGGCAACACCACCATGTTGACATGGGAACAGTGCACCTTT
TCCAATGCTCAGGCTATCAAACATAAAAAAAAAAATGCAGGAGCTGCAGC
GTACGATGTAATCGTCCTAGCCTCAGGGGCCGGCATCTGCTCTTTCCCCG
CACTGAAGCATCTACCCATTGAGCTGGTCACAGGACGCACTTTACTGGTG
GATCAAGAGGAAGAAGATAAGGAAGGGAGGGAAGAGAGCGCGGCGGGGAC
CTCATTGGGCTCAGCATTGCTCTGCGGCGAATATGTAGTGCCGGGGGTGG
ACTTGAGGAGGGGCGAAGACTGGACGAAGGCAGAGAGGAGAGTGCTGAGG
TGTGGTTCGACAAAGGAATACGTGAAAGATCCTTGGGGACAAGTGGCCAA
AGTGAAAGGCGGGGAGGAGAAAGAGGAAAAGGGCGAGGAGAAGATGAGGG
CTTTGCGAGAGAAAGCGGAGAGGATCTACCCTCCTTTGAAAAGGAGACCT
GCCGCGTACCGTATCACGACTGGTACTCGCGTAGCCACGCCAAGAAGTGA
TCTTGGCAGGGTTCCTATACTCGGTCGTGTTTCTTTGAGAGGAAAGGAGG
GAGGAAAGGAGGAAGGGGAGGAGGTGGAGACGTGGTTGTACACCGGGTTG
GGTGGGAGGGGCTTGATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGA
GGCTATCTTGATGGGGGATGAGACATTACTGCCCTTCCAGGTACGGGCAC
CCCTTGTCAAGCAGAGGGAAAAAAGATTTTGGTGA
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Synonyms
Publications