NO07G02420.1, NO07G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02420.1
Unique NameNO07G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2582
Alignment locationchr7:702305..704886 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:702305..704886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02420.1 vs.
Match: EWM27226.1 (dihydrouridine synthase, partial [Nannochloropsis gaditana])

HSP 1 Score: 525.4 bits (1352), Expect = 2.500e-145
Identity = 286/470 (60.85%), Postives = 343/470 (72.98%), Query Frame = 0 
Query:    1 MVAFRARSKWKRGWRRLRHDGTTSAGSTADEDAFTFYWLFIQARLNSPEWPLPSPSRPISILGGIFGEVRQPLFVLAPMVLQSERAFRLLVQRYGVKLCFSPMLLARNVLNHAETGKVECPYARELLRPCPQDKPVMAQLAGADPQLILAAARRLWEGGNIAGIDLNFGCPQKCAEIGMYGAYLVQKDSDTAVAMVRILVKELGVPVSCKLRCIGGVEATVSFAQRLEEAGAALLTVHGRTPHQRDHQAISDFDVIRAVREAVSIPVLANGNCRTRQDAECALRYTGCDGMMSAVGLLRNPRLFAA----------PADTIAPA----DAALTSSGTLTNPRVAFACAWEYLELAEAFPPPEPRCVRDHLQVILQGVLQFKEVALWNLLGSDRMVLNKQFRELLRLGAVLCASRSEEGMKVGKEGEGGVLTLQEIKSLHRRGDKNEEEQQEGDGKGFVWGGLFEEEGEEE 457
            MVAFRARSKW+RGWRRL+ D  ++ G ++ E AF  Y   I  RL SPEWPLPSP R  S L   F E  QP+FVLAPMVLQSERAFRLLVQRYGV L FSPMLLARNVL      +++ PY  ELLRPC  D PV+AQLAG+DP  +LAAA+RLW+GG IAG+D+N GCPQ+CA+ G YGAYL +++ +TA  MVR++ +ELGVPVSCKLR +  V+ T   A+RL  AGA++LTVHGR+P +RDHQ++SD DVIRAVREAV +PV+ANGNCRTR+DAE A+ YTGCDG MSA+GLLRNPRLF A           AD  APA    ++AL++SGTL +P  AF+CAWEYL LAEA PPPE RCVRDHLQ +LQG+LQ + VALWNLLGS +MVL +QF E LRL AV C     EG ++       VL+L EIKSLHRR + N +E +E D     WG LF E  E E
Sbjct:    1 MVAFRARSKWRRGWRRLQSDAGSADGLSSSE-AFQVYRDLIITRLCSPEWPLPSPPRRFSFLREGFDET-QPVFVLAPMVLQSERAFRLLVQRYGVTLTFSPMLLARNVLLKRNEDQMD-PYVLELLRPCADDTPVIAQLAGSDPLEMLAAAQRLWDGGQIAGVDINLGCPQQCAKAGNYGAYLAEREPETAAIMVRLISQELGVPVSCKLRNMYDVDTTTRLARRLAGAGASMLTVHGRSPRERDHQSLSDLDVIRAVREAVPVPVVANGNCRTREDAERAMEYTGCDGFMSAIGLLRNPRLFGASGAARPAASPAADATAPAVPGHESALSASGTLVDPEEAFSCAWEYLRLAEAHPPPEVRCVRDHLQALLQGLLQQERVALWNLLGSSQMVLLRQFSEFLRLSAVECGVALPEGERLVP-----VLSLGEIKSLHRR-EINGQEDEEDDS----WGMLFLEGNEME 457
The following BLAST results are available for this feature:
BLAST of NO07G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27226.12.500e-14560.85dihydrouridine synthase, partial [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02420NO07G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02420.1NO07G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02420.1.cds1NO07G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02420.1 ID=NO07G02420.1|Name=NO07G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp
CGTGGCGGTGCGAACAAGGTGACGGACTACATAGTTAGAAAGTGGATGAG
CATGGTGGTGATCTGGCTGGGCTATGGTGGTGGGCCTAAGCGTGAAGGAA
AAAAAAAAAGGTGGACTTGCCCTCGGGTTCCCTGGGCCCGCGCGGGGCCC
TGGGGTTGCGTGACAGCCCGCTAGCACGATGGCAGCAGTTGGGGCCTCAG
TTCCCCTACCACGGTGTGTTGTACCGCCGACGCCACGGCCCACGGTAACC
ACCTCTCTCCAAATATGGGACACAGACAACCAATTAACACAGAGAATTTG
CGTCAGCAAGTCGAAATGGACCGTGAGCTCTTTCTGAGACACATCATCGA
TCTCATCGACCTCCCAACCCTCATCTCACACTCCACTCCACTTCATTATG
CTATCCAAGCAATGTCACTCACTTCAGGTGTCACGACTTTTGTCGATCAA
GGGGATTGTATGTTAAGGCTTTAAATACGCCCCCCATTTCTCCCCACCTC
ACCTTTTCCAATATACAGGACACACTAGGTAGGGTTAAAGTCATAAATGG
TAGCGTTTCGAGCTCGGTCAAAGTGGAAGCGGGGTTGGCGGCGCCTGAGG
CATGATGGCACAACATCAGCGGGAAGCACTGCAGATGAGGACGCGTTTAC
TTTTTATTGGCTTTTCATTCAGGCGCGTCTCAACTCGCCCGAATGGCCTT
TACCCTCTCCCTCACGCCCCATCTCCATCCTTGGAGGCATTTTCGGAGAA
GTGAGGCAGCCGCTCTTCGTACTGGCACCGATGGTCCTCCAATCAGAGAG
GGCCTTCCGGCTGCTCGTGCAACGATATGGTGTCAAGCTGTGCTTTTCGC
CAATGCTCCTCGCCCGCAATGTCCTTAATCACGCAGAAACAGGTAAGGTC
GAATGCCCTTATGCCCGAGAGCTTCTTCGACCCTGCCCTCAAGACAAGCC
AGTTATGGCTCAGTTAGCCGGTGCGGACCCACAACTGATTCTAGCAGCTG
CCCGTAGACTATGGGAAGGGGGAAATATAGCAGGTATCGATCTTAATTTT
GGTTGCCCACAGAAATGTGCTGAGATCGGAATGTATGGTGCATACCTTGT
TCAGAAGGATTCTGACACCGCTGTGGCCATGGTTAGGATTTTGGTTAAGG
AATTAGGCGTGCCCGTTTCGTGTAAGTTGCGTTGTATAGGAGGAGTGGAG
GCAACCGTTTCTTTTGCGCAGCGTTTGGAGGAGGCAGGGGCAGCGCTGTT
GACCGTGCATGGTCGGACGCCACATCAGAGAGATCATCAGGCGATAAGTG
ATTTCGATGTAATCCGTGCGGTGCGAGAAGCGGTCTCGATCCCTGTCTTG
GCGAATGGGAATTGTCGTACACGGCAGGATGCGGAATGTGCGTTGCGTTA
TACTGGGTGTGACGGCATGATGAGTGCGGTGGGGCTCCTTCGAAATCCGA
GACTTTTTGCTGCTCCTGCTGATACAATTGCTCCAGCTGACGCTGCTCTC
ACATCAAGCGGCACCCTCACTAACCCCAGGGTCGCTTTTGCCTGTGCCTG
GGAATACCTCGAGCTCGCTGAAGCTTTCCCACCGCCCGAGCCCCGTTGTG
TGCGTGATCATCTCCAGGTCATACTACAGGGAGTGTTGCAATTTAAAGAG
GTAGCTCTGTGGAATCTGTTGGGGAGTGATCGCATGGTTTTGAACAAACA
ATTCAGAGAGTTGTTGCGACTTGGCGCGGTTCTCTGCGCGAGTCGCTCGG
AGGAGGGAATGAAGGTAGGAAAAGAAGGAGAAGGAGGAGTGTTGACGTTG
CAGGAGATTAAGTCATTGCATAGGCGGGGGGATAAAAACGAGGAGGAGCA
ACAGGAAGGGGACGGGAAAGGTTTTGTTTGGGGTGGATTGTTCGAAGAGG
AGGGGGAGGAGGAAAATGAGGAGAAGGAGGAGAAGGAGGAGAAAGATGAC
CCGAAGGATGAGAATCTAGTCTATGCGCTTGAGGTGCAAGTGCCATGGTC
CCGTCGGCTGCTGGATGGAAGCAAGACTGTTGAGACTCGTGGGTATGACT
TGCCTTTACATTTGTGGGGACATCCTATTCTCTTGCTTGAGTCTCCTGCT
GGAGGAGGTTTGGCCAAGCACGGTCGAGATGCAGGAAAGACGGTGGGTGT
TGTCGTCTTTGGGAGGAGTAAGAGATACCGTTCGAGGGCAGAATGGGTGG
ATGACGCGGACAAGCATGGGGTTGATCCGCAGGCAGGGCGGGAAGAATTT
GGCTGGTGTGAGCACAAGACAAAGTGGGGGTGGGAGGTTGATAACCTTGA
GGTATGGGGGGAGGAGCAGCGGAGGGGGGTGAGCCTGAGGGAAGAACAGA
GGATAGTTGGGAGTATTTTTTGTTTGGGAGAGGAGGGGGGAAAAAGAGAA
ATAGATGCTGATTTGCAGGTAGATATAATGGCGCCAAAAGGGGACCAAGG
AGTTGTTATGTGAATATAATAGAATCCAAGGTGCAACCTTTAATGAGCAT
TTATTTTGATGATAGCACAGACCTTCAGTGACGCGAACTCAATAATTATG
AATATGACATACTTTGTAAAAACGGTCAGCGA
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protein sequence of NO07G02420.1

>NO07G02420.1-protein ID=NO07G02420.1-protein|Name=NO07G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=639bp
MVAFRARSKWKRGWRRLRHDGTTSAGSTADEDAFTFYWLFIQARLNSPEW
PLPSPSRPISILGGIFGEVRQPLFVLAPMVLQSERAFRLLVQRYGVKLCF
SPMLLARNVLNHAETGKVECPYARELLRPCPQDKPVMAQLAGADPQLILA
AARRLWEGGNIAGIDLNFGCPQKCAEIGMYGAYLVQKDSDTAVAMVRILV
KELGVPVSCKLRCIGGVEATVSFAQRLEEAGAALLTVHGRTPHQRDHQAI
SDFDVIRAVREAVSIPVLANGNCRTRQDAECALRYTGCDGMMSAVGLLRN
PRLFAAPADTIAPADAALTSSGTLTNPRVAFACAWEYLELAEAFPPPEPR
CVRDHLQVILQGVLQFKEVALWNLLGSDRMVLNKQFRELLRLGAVLCASR
SEEGMKVGKEGEGGVLTLQEIKSLHRRGDKNEEEQQEGDGKGFVWGGLFE
EEGEEENEEKEEKEEKDDPKDENLVYALEVQVPWSRRLLDGSKTVETRGY
DLPLHLWGHPILLLESPAGGGLAKHGRDAGKTVGVVVFGRSKRYRSRAEW
VDDADKHGVDPQAGREEFGWCEHKTKWGWEVDNLEVWGEEQRRGVSLREE
QRIVGSIFCLGEEGGKREIDADLQVDIMAPKGDQGVVM*
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mRNA from alignment at chr7:702305..704886+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02420.1 ID=NO07G02420.1|Name=NO07G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp|location=Sequence derived from alignment at chr7:702305..704886+ (Nannochloropsis oceanica)
CGTGGCGGTGCGAACAAGGTGACGGACTACATAGTTAGAAAGTGGATGAG
CATGGTGGTGATCTGGCTGGGCTATGGTGGTGGGCCTAAGCGTGAAGGAA
AAAAAAAAAGGTGGACTTGCCCTCGGGTTCCCTGGGCCCGCGCGGGGCCC
TGGGGTTGCGTGACAGCCCGCTAGCACGATGGCAGCAGTTGGGGCCTCAG
TTCCCCTACCACGGTGTGTTGTACCGCCGACGCCACGGCCCACGGTAACC
ACCTCTCTCCAAATATGGGACACAGACAACCAATTAACACAGAGAATTTG
CGTCAGCAAGTCGAAATGGACCGTGAGCTCTTTCTGAGACACATCATCGA
TCTCATCGACCTCCCAACCCTCATCTCACACTCCACTCCACTTCATTATG
CTATCCAAGCAATGTCACTCACTTCAGGTGTCACGACTTTTGTCGATCAA
GGGGATTGTATGTTAAGGCTTTAAATACGCCCCCCATTTCTCCCCACCTC
ACCTTTTCCAATATACAGGACACACTAGGTAGGGTTAAAGTCATAAATGG
TAGCGTTTCGAGCTCGGTCAAAGTGGAAGCGGGGTTGGCGGCGCCTGAGG
CATGATGGCACAACATCAGCGGGAAGCACTGCAGATGAGGACGCGTTTAC
TTTTTATTGGCTTTTCATTCAGGCGCGTCTCAACTCGCCCGAATGGCCTT
TACCCTCTCCCTCACGCCCCATCTCCATCCTTGGAGGCATTTTCGGAGAA
GTGAGGCAGCCGCTCTTCGTACTGGCACCGATGGTCCTCCAATCAGAGAG
GGCCTTCCGGCTGCTCGTGCAACGATATGGTGTCAAGCTGTGCTTTTCGC
CAATGCTCCTCGCCCGCAATGTCCTTAATCACGCAGAAACAGGTAAGGTC
GAATGCCCTTATGCCCGAGAGCTTCTTCGACCCTGCCCTCAAGACAAGCC
AGTTATGGCTCAGTTAGCCGGTGCGGACCCACAACTGATTCTAGCAGCTG
CCCGTAGACTATGGGAAGGGGGAAATATAGCAGGTATCGATCTTAATTTT
GGTTGCCCACAGAAATGTGCTGAGATCGGAATGTATGGTGCATACCTTGT
TCAGAAGGATTCTGACACCGCTGTGGCCATGGTTAGGATTTTGGTTAAGG
AATTAGGCGTGCCCGTTTCGTGTAAGTTGCGTTGTATAGGAGGAGTGGAG
GCAACCGTTTCTTTTGCGCAGCGTTTGGAGGAGGCAGGGGCAGCGCTGTT
GACCGTGCATGGTCGGACGCCACATCAGAGAGATCATCAGGCGATAAGTG
ATTTCGATGTAATCCGTGCGGTGCGAGAAGCGGTCTCGATCCCTGTCTTG
GCGAATGGGAATTGTCGTACACGGCAGGATGCGGAATGTGCGTTGCGTTA
TACTGGGTGTGACGGCATGATGAGTGCGGTGGGGCTCCTTCGAAATCCGA
GACTTTTTGCTGCTCCTGCTGATACAATTGCTCCAGCTGACGCTGCTCTC
ACATCAAGCGGCACCCTCACTAACCCCAGGGTCGCTTTTGCCTGTGCCTG
GGAATACCTCGAGCTCGCTGAAGCTTTCCCACCGCCCGAGCCCCGTTGTG
TGCGTGATCATCTCCAGGTCATACTACAGGGAGTGTTGCAATTTAAAGAG
GTAGCTCTGTGGAATCTGTTGGGGAGTGATCGCATGGTTTTGAACAAACA
ATTCAGAGAGTTGTTGCGACTTGGCGCGGTTCTCTGCGCGAGTCGCTCGG
AGGAGGGAATGAAGGTAGGAAAAGAAGGAGAAGGAGGAGTGTTGACGTTG
CAGGAGATTAAGTCATTGCATAGGCGGGGGGATAAAAACGAGGAGGAGCA
ACAGGAAGGGGACGGGAAAGGTTTTGTTTGGGGTGGATTGTTCGAAGAGG
AGGGGGAGGAGGAAAATGAGGAGAAGGAGGAGAAGGAGGAGAAAGATGAC
CCGAAGGATGAGAATCTAGTCTATGCGCTTGAGGTGCAAGTGCCATGGTC
CCGTCGGCTGCTGGATGGAAGCAAGACTGTTGAGACTCGTGGGTATGACT
TGCCTTTACATTTGTGGGGACATCCTATTCTCTTGCTTGAGTCTCCTGCT
GGAGGAGGTTTGGCCAAGCACGGTCGAGATGCAGGAAAGACGGTGGGTGT
TGTCGTCTTTGGGAGGAGTAAGAGATACCGTTCGAGGGCAGAATGGGTGG
ATGACGCGGACAAGCATGGGGTTGATCCGCAGGCAGGGCGGGAAGAATTT
GGCTGGTGTGAGCACAAGACAAAGTGGGGGTGGGAGGTTGATAACCTTGA
GGTATGGGGGGAGGAGCAGCGGAGGGGGGTGAGCCTGAGGGAAGAACAGA
GGATAGTTGGGAGTATTTTTTGTTTGGGAGAGGAGGGGGGAAAAAGAGAA
ATAGATGCTGATTTGCAGGTAGATATAATGGCGCCAAAAGGGGACCAAGG
AGTTGTTATGTGAATATAATAGAATCCAAGGTGCAACCTTTAATGAGCAT
TTATTTTGATGATAGCACAGACCTTCAGTGACGCGAACTCAATAATTATG
AATATGACATACTTTGTAAAAACGGTCAGCGA
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Coding sequence (CDS) from alignment at chr7:702305..704886+

>NO07G02420.1 ID=NO07G02420.1|Name=NO07G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=1917bp|location=Sequence derived from alignment at chr7:702305..704886+ (Nannochloropsis oceanica)
ATGGTAGCGTTTCGAGCTCGGTCAAAGTGGAAGCGGGGTTGGCGGCGCCT
GAGGCATGATGGCACAACATCAGCGGGAAGCACTGCAGATGAGGACGCGT
TTACTTTTTATTGGCTTTTCATTCAGGCGCGTCTCAACTCGCCCGAATGG
CCTTTACCCTCTCCCTCACGCCCCATCTCCATCCTTGGAGGCATTTTCGG
AGAAGTGAGGCAGCCGCTCTTCGTACTGGCACCGATGGTCCTCCAATCAG
AGAGGGCCTTCCGGCTGCTCGTGCAACGATATGGTGTCAAGCTGTGCTTT
TCGCCAATGCTCCTCGCCCGCAATGTCCTTAATCACGCAGAAACAGGTAA
GGTCGAATGCCCTTATGCCCGAGAGCTTCTTCGACCCTGCCCTCAAGACA
AGCCAGTTATGGCTCAGTTAGCCGGTGCGGACCCACAACTGATTCTAGCA
GCTGCCCGTAGACTATGGGAAGGGGGAAATATAGCAGGTATCGATCTTAA
TTTTGGTTGCCCACAGAAATGTGCTGAGATCGGAATGTATGGTGCATACC
TTGTTCAGAAGGATTCTGACACCGCTGTGGCCATGGTTAGGATTTTGGTT
AAGGAATTAGGCGTGCCCGTTTCGTGTAAGTTGCGTTGTATAGGAGGAGT
GGAGGCAACCGTTTCTTTTGCGCAGCGTTTGGAGGAGGCAGGGGCAGCGC
TGTTGACCGTGCATGGTCGGACGCCACATCAGAGAGATCATCAGGCGATA
AGTGATTTCGATGTAATCCGTGCGGTGCGAGAAGCGGTCTCGATCCCTGT
CTTGGCGAATGGGAATTGTCGTACACGGCAGGATGCGGAATGTGCGTTGC
GTTATACTGGGTGTGACGGCATGATGAGTGCGGTGGGGCTCCTTCGAAAT
CCGAGACTTTTTGCTGCTCCTGCTGATACAATTGCTCCAGCTGACGCTGC
TCTCACATCAAGCGGCACCCTCACTAACCCCAGGGTCGCTTTTGCCTGTG
CCTGGGAATACCTCGAGCTCGCTGAAGCTTTCCCACCGCCCGAGCCCCGT
TGTGTGCGTGATCATCTCCAGGTCATACTACAGGGAGTGTTGCAATTTAA
AGAGGTAGCTCTGTGGAATCTGTTGGGGAGTGATCGCATGGTTTTGAACA
AACAATTCAGAGAGTTGTTGCGACTTGGCGCGGTTCTCTGCGCGAGTCGC
TCGGAGGAGGGAATGAAGGTAGGAAAAGAAGGAGAAGGAGGAGTGTTGAC
GTTGCAGGAGATTAAGTCATTGCATAGGCGGGGGGATAAAAACGAGGAGG
AGCAACAGGAAGGGGACGGGAAAGGTTTTGTTTGGGGTGGATTGTTCGAA
GAGGAGGGGGAGGAGGAAAATGAGGAGAAGGAGGAGAAGGAGGAGAAAGA
TGACCCGAAGGATGAGAATCTAGTCTATGCGCTTGAGGTGCAAGTGCCAT
GGTCCCGTCGGCTGCTGGATGGAAGCAAGACTGTTGAGACTCGTGGGTAT
GACTTGCCTTTACATTTGTGGGGACATCCTATTCTCTTGCTTGAGTCTCC
TGCTGGAGGAGGTTTGGCCAAGCACGGTCGAGATGCAGGAAAGACGGTGG
GTGTTGTCGTCTTTGGGAGGAGTAAGAGATACCGTTCGAGGGCAGAATGG
GTGGATGACGCGGACAAGCATGGGGTTGATCCGCAGGCAGGGCGGGAAGA
ATTTGGCTGGTGTGAGCACAAGACAAAGTGGGGGTGGGAGGTTGATAACC
TTGAGGTATGGGGGGAGGAGCAGCGGAGGGGGGTGAGCCTGAGGGAAGAA
CAGAGGATAGTTGGGAGTATTTTTTGTTTGGGAGAGGAGGGGGGAAAAAG
AGAAATAGATGCTGATTTGCAGGTAGATATAATGGCGCCAAAAGGGGACC
AAGGAGTTGTTATGTGA
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Synonyms
Publications