NO07G02270.1, NO07G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02270.1
Unique NameNO07G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1290
Alignment locationchr7:675243..676725 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:675243..676725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02270.1 vs.
Match: EWM27195.1 (hsp90-like protein [Nannochloropsis gaditana])

HSP 1 Score: 477.6 bits (1228), Expect = 4.000e-131
Identity = 261/399 (65.41%), Postives = 307/399 (76.94%), Query Frame = 0 
Query:   38 RGIFAAGNLPEAELLYDKAIAIKPDAVLFANRAAVRLGLNLTDSALADACKAIEIDPKYSKAYYRKGQAHNARREHESAVDAFEKGMELDPGNRSFRECATKAKAAAAKL-------AEEAAKTPSPPPFTTPATATTTTTTTTTSNSSLLLAAPGHTGSKKKKPKKKEGEAGGGLGEEDNSGEEDVIIKAEAMRGYKVLEDGRKTTYFNNTLSEEARRLIGDIAPKKIEMPEG-GGVGGEGTAGSAWNYAGTFEERNMTEWATGRLQELLSEVCFSVPREGVGAGVEEGGRFDVKKVTGLEGDASVTFVRGKKKYLFDFVFTLEWEIGLLGGGKAKGTLKYPDVTPDNDDEYDTLLEVDQLTPPEARPLINAYVKSSSAGLQQMVREKLQQFMTEYQA 429
            R IFA+GN PEAE+LYDKAI +KPDAVL+ANRAAVRLGLNL DSALADA KAIE+D +YSKAYYRKGQAHN R+E E+A  AFE+G+ELDP N++FRECA+ AK AAAK        A+E+++ P         + + +T +   SNS   ++AP  +   KK   K  GE    + + D   +++    +E MRGYK+LEDGRKTTYFNN LSE+A+RLIGDIAPKKIE P G G  G EGTAGSAWNYAGTFEERNMT+WA GRLQELL E  F +P   VGAG+EEG   +VKKVTGLEGDA+VTFVRGKKKYL+DFVFTLEWE GL GG KAKGTL+YPDVTPDNDDEYDTLLEVDQLTPPEAR LI+ +VKSS  GLQ +VREKL+ FM ++QA
Sbjct:   16 RSIFASGNFPEAEILYDKAIKVKPDAVLYANRAAVRLGLNLADSALADATKAIELDAEYSKAYYRKGQAHNVRKEFEAAFQAFERGIELDPSNKTFRECASAAKEAAAKARAIQSLSADESSQKPGQ-------SISDSTKSKGPSNSMSPVSAPPPS---KKAASKSAGER---MVDGDGDQKDEKNSWSENMRGYKILEDGRKTTYFNNVLSEDAKRLIGDIAPKKIEAPVGTGNRGTEGTAGSAWNYAGTFEERNMTDWAKGRLQELLGECRFPIPARHVGAGLEEGAVIEVKKVTGLEGDAAVTFVRGKKKYLYDFVFTLEWEAGLAGGAKAKGTLRYPDVTPDNDDEYDTLLEVDQLTPPEARSLIDEFVKSSRTGLQGVVREKLRLFMADFQA 401
The following BLAST results are available for this feature:
BLAST of NO07G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27195.14.000e-13165.41hsp90-like protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02270NO07G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02270.1NO07G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02270.1.cds1NO07G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02270.1.cds2NO07G02270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02270.1 ID=NO07G02270.1|Name=NO07G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
ATGTTCGAGAACAGTGCCATCCTCGGTGGACGACACTCAGATGTGCTGGA
CGCGCACCCAGACACAGAAGAGAGCAAGCTCGCGCTTGTCGAGGAAATCA
AGAATCGAGCAAGGGGTATTTTTGCCGCGGGCAACCTGCCCGAGGCAGAA
CTTCTCTATGACAAGGCCATTGCCATTAAGCCCGATGCCGTCTTGTTTGC
AAACCGAGCTGCTGTTCGCCTTGGTCTAAATCTCACTGACTCAGCACTCG
CAGACGCCTGCAAGGCCATCGAGATCGATCCAAAATACAGCAAGGCGTAC
TACCGGAAGGGACAAGCACACAACGCGCGCAGGGAACATGAGTCGGCCGT
GGACGCTTTTGAAAAAGGAATGGAACTTGATCCCGGCAACCGAAGTTTTC
GAGAATGTGCAACCAAGGCCAAGGCTGCAGCTGCAAAACTCGCAGAGGAA
GCTGCCAAAACACCATCCCCTCCACCATTTACAACTCCGGCAACGGCGAC
AACGACGACGACGACCACCACCACAAGCAATAGCAGCCTCCTCCTGGCGG
CACCAGGACATACCGGCAGCAAAAAGAAGAAGCCAAAGAAGAAGGAAGGG
GAGGCGGGAGGGGGCTTGGGTGAGGAGGATAATAGTGGGGAGGAAGACGT
AATAATCAAAGCGGAAGCCATGCGAGGGTACAAGGTTCTCGAGGATGGGC
GAAAGACAACCTATTTTAACAACACGCTCTCGGAGGAGGCTCGGCGCTTA
ATAGGCGATATCGCCCCGAAGAAGATCGAAATGCCGGAGGGCGGCGGGGT
CGGCGGGGAGGGTACGGCGGGCTCGGCGTGGAATTATGCGGGAACTTTCG
AGGAGCGGAATATGACCGAGTGGGCGACGGGCCGATTACAGGAGCTGCTA
TCGGAGGTGTGTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCGGGGGTAGA
GGAAGGGGGGAGATTTGATGTGAAGAAGGTGACGGGGCTCGAGGGGGATG
CGTCGGTCACGTTTGTTAGGGGAAAGAAAAAGTATTTGTTTGATTTTGTG
TTTACTCTGGAGTGGGAGATTGGGCTTTTGGGGGGGGGGAAGGCGAAGGG
GACGTTGAAATACCCGGATGTGACGCCGGATAATGACGACGAGTATGATA
CGCTTTTGGAGGTTGACCAGCTGACTCCGCCTGAGGCAAGGCCGCTAATA
AACGCTTATGTCAAGAGTTCCAGCGCGGGTCTGCAGCAGATGGTGAGGGA
GAAGTTGCAGCAATTCATGACGGAATATCAGGCCTTATAG
back to top

protein sequence of NO07G02270.1

>NO07G02270.1-protein ID=NO07G02270.1-protein|Name=NO07G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MFENSAILGGRHSDVLDAHPDTEESKLALVEEIKNRARGIFAAGNLPEAE
LLYDKAIAIKPDAVLFANRAAVRLGLNLTDSALADACKAIEIDPKYSKAY
YRKGQAHNARREHESAVDAFEKGMELDPGNRSFRECATKAKAAAAKLAEE
AAKTPSPPPFTTPATATTTTTTTTTSNSSLLLAAPGHTGSKKKKPKKKEG
EAGGGLGEEDNSGEEDVIIKAEAMRGYKVLEDGRKTTYFNNTLSEEARRL
IGDIAPKKIEMPEGGGVGGEGTAGSAWNYAGTFEERNMTEWATGRLQELL
SEVCFSVPREGVGAGVEEGGRFDVKKVTGLEGDASVTFVRGKKKYLFDFV
FTLEWEIGLLGGGKAKGTLKYPDVTPDNDDEYDTLLEVDQLTPPEARPLI
NAYVKSSSAGLQQMVREKLQQFMTEYQAL*
back to top

mRNA from alignment at chr7:675243..676725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02270.1 ID=NO07G02270.1|Name=NO07G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp|location=Sequence derived from alignment at chr7:675243..676725+ (Nannochloropsis oceanica)
ATGTTCGAGAACAGTGCCATCCTCGGTGGACGACACTCAGATGTGCTGGA
CGCGCACCCAGACACAGAAGAGAGCAAGCTCGCGCTTGTCGAGGAAATCA
AGAATCGAGCAAGGTAGAGATAGGGTGGGGAGGAAGGAGAGAGAGGGAGG
AGGCTGAATTTGCGGGTGCTACCCATGTGTCGCTCAGACCCATGTATAGG
ACGCAATGGCAAAAGTGGGAGGAGTGAAAGTCAGCCTCATGCACTCGGAC
TCACATCACACGCACATTCCTCTTTGCGTTTTCCTACCAACTGAACTACT
GAACAGGGGTATTTTTGCCGCGGGCAACCTGCCCGAGGCAGAACTTCTCT
ATGACAAGGCCATTGCCATTAAGCCCGATGCCGTCTTGTTTGCAAACCGA
GCTGCTGTTCGCCTTGGTCTAAATCTCACTGACTCAGCACTCGCAGACGC
CTGCAAGGCCATCGAGATCGATCCAAAATACAGCAAGGCGTACTACCGGA
AGGGACAAGCACACAACGCGCGCAGGGAACATGAGTCGGCCGTGGACGCT
TTTGAAAAAGGAATGGAACTTGATCCCGGCAACCGAAGTTTTCGAGAATG
TGCAACCAAGGCCAAGGCTGCAGCTGCAAAACTCGCAGAGGAAGCTGCCA
AAACACCATCCCCTCCACCATTTACAACTCCGGCAACGGCGACAACGACG
ACGACGACCACCACCACAAGCAATAGCAGCCTCCTCCTGGCGGCACCAGG
ACATACCGGCAGCAAAAAGAAGAAGCCAAAGAAGAAGGAAGGGGAGGCGG
GAGGGGGCTTGGGTGAGGAGGATAATAGTGGGGAGGAAGACGTAATAATC
AAAGCGGAAGCCATGCGAGGGTACAAGGTTCTCGAGGATGGGCGAAAGAC
AACCTATTTTAACAACACGCTCTCGGAGGAGGCTCGGCGCTTAATAGGCG
ATATCGCCCCGAAGAAGATCGAAATGCCGGAGGGCGGCGGGGTCGGCGGG
GAGGGTACGGCGGGCTCGGCGTGGAATTATGCGGGAACTTTCGAGGAGCG
GAATATGACCGAGTGGGCGACGGGCCGATTACAGGAGCTGCTATCGGAGG
TGTGTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCGGGGGTAGAGGAAGGG
GGGAGATTTGATGTGAAGAAGGTGACGGGGCTCGAGGGGGATGCGTCGGT
CACGTTTGTTAGGGGAAAGAAAAAGTATTTGTTTGATTTTGTGTTTACTC
TGGAGTGGGAGATTGGGCTTTTGGGGGGGGGGAAGGCGAAGGGGACGTTG
AAATACCCGGATGTGACGCCGGATAATGACGACGAGTATGATACGCTTTT
GGAGGTTGACCAGCTGACTCCGCCTGAGGCAAGGCCGCTAATAAACGCTT
ATGTCAAGAGTTCCAGCGCGGGTCTGCAGCAGATGGTGAGGGAGAAGTTG
CAGCAATTCATGACGGAATATCAGGCCTTATAG
back to top

Coding sequence (CDS) from alignment at chr7:675243..676725+

>NO07G02270.1 ID=NO07G02270.1|Name=NO07G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr7:675243..676725+ (Nannochloropsis oceanica)
ATGTTCGAGAACAGTGCCATCCTCGGTGGACGACACTCAGATGTGCTGGA
CGCGCACCCAGACACAGAAGAGAGCAAGCTCGCGCTTGTCGAGGAAATCA
AGAATCGAGCAAGGGGTATTTTTGCCGCGGGCAACCTGCCCGAGGCAGAA
CTTCTCTATGACAAGGCCATTGCCATTAAGCCCGATGCCGTCTTGTTTGC
AAACCGAGCTGCTGTTCGCCTTGGTCTAAATCTCACTGACTCAGCACTCG
CAGACGCCTGCAAGGCCATCGAGATCGATCCAAAATACAGCAAGGCGTAC
TACCGGAAGGGACAAGCACACAACGCGCGCAGGGAACATGAGTCGGCCGT
GGACGCTTTTGAAAAAGGAATGGAACTTGATCCCGGCAACCGAAGTTTTC
GAGAATGTGCAACCAAGGCCAAGGCTGCAGCTGCAAAACTCGCAGAGGAA
GCTGCCAAAACACCATCCCCTCCACCATTTACAACTCCGGCAACGGCGAC
AACGACGACGACGACCACCACCACAAGCAATAGCAGCCTCCTCCTGGCGG
CACCAGGACATACCGGCAGCAAAAAGAAGAAGCCAAAGAAGAAGGAAGGG
GAGGCGGGAGGGGGCTTGGGTGAGGAGGATAATAGTGGGGAGGAAGACGT
AATAATCAAAGCGGAAGCCATGCGAGGGTACAAGGTTCTCGAGGATGGGC
GAAAGACAACCTATTTTAACAACACGCTCTCGGAGGAGGCTCGGCGCTTA
ATAGGCGATATCGCCCCGAAGAAGATCGAAATGCCGGAGGGCGGCGGGGT
CGGCGGGGAGGGTACGGCGGGCTCGGCGTGGAATTATGCGGGAACTTTCG
AGGAGCGGAATATGACCGAGTGGGCGACGGGCCGATTACAGGAGCTGCTA
TCGGAGGTGTGTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCGGGGGTAGA
GGAAGGGGGGAGATTTGATGTGAAGAAGGTGACGGGGCTCGAGGGGGATG
CGTCGGTCACGTTTGTTAGGGGAAAGAAAAAGTATTTGTTTGATTTTGTG
TTTACTCTGGAGTGGGAGATTGGGCTTTTGGGGGGGGGGAAGGCGAAGGG
GACGTTGAAATACCCGGATGTGACGCCGGATAATGACGACGAGTATGATA
CGCTTTTGGAGGTTGACCAGCTGACTCCGCCTGAGGCAAGGCCGCTAATA
AACGCTTATGTCAAGAGTTCCAGCGCGGGTCTGCAGCAGATGGTGAGGGA
GAAGTTGCAGCAATTCATGACGGAATATCAGGCCTTATAG
back to top
Synonyms
Publications